RchiOBHm_Chr5g0001121

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001589
Physical Location & Seq
Reverse (-)
599086 .. 599787
702 bp
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UTR
Exon/CDS
Intron
PRQ28258

Sequence Viewer

Length: 264 bp
ATGCACAGATTGCGAGGAGCCTCATGCTTCCAAGGACATGGAAGGAGGAATTGTGAGCGAAGAAGGAAATCTGTTCATGGATGCATTGTTAGTCCAGACCTGTTTGTGTTGAACTTGGTCATTGTTAAGAAAGGTGACAATGACCTTCCTGGACTGACTAATGTTGAAAAGCCAACAGTGAGAGTTCCAAAGAGGGCTTCCAAGATCCACAAGCTATTTAACCTCACCAGGGACGATGATGGTAGGAAGTATGTCAACACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

87

Amino Acids

9.94

Weight (kDa)

10.48

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6e PF01092 6 - 54 4.4e-13 Ribosomal protein S6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 2 cut(s) 112, 167
AjnI CCWGG 2 cut(s) 148, 227
AjuI GAANNNNNNNTTGG 2 cut(s) 181, 213
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
AlwI GGATC 1 cut(s) 199
AsuHPI GGTGA 2 cut(s) 146, 217
BccI CCATC 1 cut(s) 233
BciT130I CCWGG 2 cut(s) 150, 229
Bme1390I CCNGG 2 cut(s) 150, 229
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 2 cut(s) 150, 229
BmsI GCATC 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 31, 228
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 1 cut(s) 229
BseBI CCWGG 2 cut(s) 150, 229
BseDI CCNNGG 2 cut(s) 31, 228
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 245
Bsp143I GATC 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 1 cut(s) 199
BssECI CCNNGG 2 cut(s) 31, 228
BssMI GATC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 2 cut(s) 150, 229
Bst4CI ACNGT 1 cut(s) 178
BstAPI GCANNNNNTGC 1 cut(s) 10
BstF5I GGATG 1 cut(s) 86
BstKTI GATC 1 cut(s) 207
BstMBI GATC 1 cut(s) 204
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 2 cut(s) 150, 229
BstSCI CCNGG 2 cut(s) 148, 227
BstX2I RGATCY 1 cut(s) 204
BstXI CCANNNNNNTGG 1 cut(s) 38
BstYI RGATCY 1 cut(s) 204
BtsCI GGATG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 183
CviAII CATG 3 cut(s) 24, 38, 77
CviJI RGCY 4 cut(s) 20, 172, 197, 214
CviKI_1 RGCY 4 cut(s) 20, 172, 197, 214
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 31
EcoRII CCWGG 2 cut(s) 148, 227
EcoT14I CCWWGG 1 cut(s) 31
EcoT22I ATGCAT 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 3 cut(s) 27, 41, 80
FaiI YATR 4 cut(s) 25, 39, 78, 252
FaqI GGGAC 1 cut(s) 245
FatI CATG 3 cut(s) 23, 37, 76
FokI GGATG 1 cut(s) 93
Hin1II CATG 3 cut(s) 27, 41, 80
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HphI GGTGA 2 cut(s) 146, 217
Hpy166II GTNNAC 1 cut(s) 256
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 3 cut(s) 36, 57, 155
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4V TGCA 2 cut(s) 4, 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
Hsp92II CATG 3 cut(s) 27, 41, 80
Kzo9I GATC 1 cut(s) 204
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 6 cut(s) 108, 113, 135, 162, 214, 241
LweI GCATC 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 134
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 1 cut(s) 72
MflI RGATCY 1 cut(s) 204
MluCI AATT 1 cut(s) 49
MnlI CCTC 5 cut(s) 8, 31, 39, 186, 233
Mph1103I ATGCAT 1 cut(s) 86
MseI TTAA 3 cut(s) 126, 219, 262
MspR9I CCNGG 2 cut(s) 150, 229
MvaI CCWGG 2 cut(s) 150, 229
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 204
NlaIII CATG 3 cut(s) 27, 41, 80
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 134
NsiI ATGCAT 1 cut(s) 86
PfoI TCCNGGA 1 cut(s) 148
Psp6I CCWGG 2 cut(s) 148, 227
PspGI CCWGG 2 cut(s) 148, 227
PspN4I GGNNCC 1 cut(s) 19
PsuI RGATCY 1 cut(s) 204
SaqAI TTAA 3 cut(s) 126, 219, 262
Sau3AI GATC 1 cut(s) 204
ScrFI CCNGG 2 cut(s) 150, 229
SetI ASST 5 cut(s) 102, 136, 147, 216, 225
SfaNI GCATC 1 cut(s) 71
Sse9I AATT 1 cut(s) 49
StyD4I CCNGG 2 cut(s) 148, 227
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 178
TasI AATT 1 cut(s) 49
Tru1I TTAA 3 cut(s) 126, 219, 262
Tru9I TTAA 3 cut(s) 126, 219, 262
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 65
TspRI CASTG 1 cut(s) 183
Zsp2I ATGCAT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.