Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001589

Physical Location & Seq

Genomic Coordinates Reverse (-)

598715 .. 600474

Gene Structure 1760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG009600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCTTACTTGGCTTGTAGATGGTTCAATATTGCTTTCTTCACACCCTTTTCCTATCAGGTGCGATACTGCTGCAACACTGGAGCTTTCTCAAGCAGAACATGAGGAGCGGAAAGCAAGGGCCTTAGCTGCAGCTGCCACAGAGTTGGAAAGACTTCTCAGAAAGGAAGATTTTGGTAAAATGAAGGTGATCGGGCAATTCAATGTTGGCTTCATTGTTGGGAAATTAGATCAAGATATATTTATAGTAGATCAGGAGCCTCATGCATCCAAGGACATGGAAGGAGGAATAGTGAGCGAAGAAGGAAGTTTGTTCATGGAAAAAGGTGACAATGACCTTCCTGGACTGACTGATGTTGAAAAGCCAACAGTGAGAGTTCCAAAGAGGGCTTCCAAGATCCACAAGCTATTTAACCTCACCAGGGACGATGATGGTAGAAAGTATGTCAACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009987 GO:0010154 GO:0015630 GO:0016020 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0030983 GO:0031974 GO:0031981 GO:0032135 GO:0032138 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990391 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03430 ko03460 map03430 map03460

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

151

Amino Acids

16.87

Weight (kDa)

5.4

Isoelectric Point (pI)

27.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31700 AT4G31700 AT5G10360 AT5G10360
fragaria_vesca	FvH4_1g20340 FvH4_5g36790 FvH4_5g36790
malus_domestica	MD08G1186900.v1.1 MD15G1372800.v1.1
prunus_persica	Prupe.1G521400_v2.0.a1 Prupe.1G521400_v2.0.a1 Prupe.6G192100_v2.0.a1
pyrus_communis	pycom08g16070 pycom15g33380
rosa_chinensis	RchiOBHm_Chr1g0378681 RchiOBHm_Chr2g0112471 RchiOBHm_Chr5g0001121 RchiOBHm_Chr5g0001131 RchiOBHm_Chr7g0242901
rosa_laevigata	RLG00000000869 RLG00000017983 RLG00000024778
rosa_multiflora	Rmu_sc0000556.1_g000006 Rmu_sc0001706.1_g000036 Rmu_sc0001758.1_g000027 Rmu_sc0004165.1_g000057
rosa_roxburghii	Rroxscaffold_2G00131400 Rroxscaffold_3G00222260 Rroxscaffold_4G00307670 Rroxscaffold_6G00413940
rosa_rugosa	Rorug02G0106700 Rorug02G0181100 Rorug07G0291700 Rorug07G0317600 Rorug07G0317700
rosa_samantha	Rh2DG241800 Rh5BG035200 Rh5CG009600 Rh6AG374700 Rh7AG084600 Rh7AG473400 Rh7BG443300 Rh7CG085600 Rh7CG490300 Rh7DG086700 Rh7DG458600
rosa_wichuraiana	Rw2G018140 Rw6G032660 Rw7G039080 Rw7G039370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	109
AciI	CCGC	1 cut(s)	109
AclWI	GGATC	1 cut(s)	391
AfiI	CCNNNNNNNGG	1 cut(s)	421
AgsI	TTSAA	3 cut(s)	27, 202, 359
AjnI	CCWGG	2 cut(s)	340, 419
AjuI	GAANNNNNNNTTGG	2 cut(s)	373, 405
AluBI	AGCT	4 cut(s)	85, 128, 134, 406
AluI	AGCT	4 cut(s)	85, 128, 134, 406
AlwI	GGATC	1 cut(s)	391
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	4 cut(s)	71, 128, 131, 134
Asp700I	GAANNNNTTC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	3 cut(s)	199, 338, 409
BbvI	GCAGC	4 cut(s)	58, 115, 121, 143
BccI	CCATC	2 cut(s)	14, 425
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	2 cut(s)	342, 421
BfmI	CTRYAG	1 cut(s)	129
BisI	GCNGC	4 cut(s)	72, 129, 132, 135
BlsI	GCNGC	4 cut(s)	73, 130, 133, 136
Bme1390I	CCNGG	2 cut(s)	342, 421
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	2 cut(s)	342, 421
BmsI	GCATC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	270, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse1I	ACTGG	1 cut(s)	84
BseBI	CCWGG	2 cut(s)	342, 421
BseDI	CCNNGG	2 cut(s)	270, 420
BseGI	GGATG	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	4 cut(s)	58, 115, 121, 143
BshFI	GGCC	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	1 cut(s)	122
Bsp143I	GATC	4 cut(s)	189, 229, 250, 396
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	258
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	1 cut(s)	391
BsrBI	CCGCTC	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	84
BssECI	CCNNGG	2 cut(s)	270, 420
BssMI	GATC	4 cut(s)	189, 229, 250, 396
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	2 cut(s)	342, 421
Bst4CI	ACNGT	1 cut(s)	370
BstDEI	CTNAG	2 cut(s)	124, 158
BstF5I	GGATG	1 cut(s)	266
BstKTI	GATC	4 cut(s)	192, 232, 253, 399
BstMBI	GATC	4 cut(s)	189, 229, 250, 396
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 128, 134
BstNI	CCWGG	2 cut(s)	342, 421
BstSCI	CCNGG	2 cut(s)	340, 419
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	4 cut(s)	58, 115, 121, 143
BstX2I	RGATCY	1 cut(s)	396
BstXI	CCANNNNNNTGG	2 cut(s)	145, 277
BstYI	RGATCY	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	266
BtsIMutI	CAGTG	2 cut(s)	77, 375
Cfr13I	GGNCC	1 cut(s)	120
CviAII	CATG	4 cut(s)	101, 263, 277, 316
DdeI	CTNAG	2 cut(s)	124, 158
DpnI	GATC	4 cut(s)	191, 231, 252, 398
DpnII	GATC	4 cut(s)	189, 229, 250, 396
Eco130I	CCWWGG	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	120
EcoRII	CCWGG	2 cut(s)	340, 419
EcoT14I	CCWWGG	1 cut(s)	270
EcoT22I	ATGCAT	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	4 cut(s)	104, 266, 280, 319
FaiI	YATR	7 cut(s)	102, 239, 245, 264, 278, 317, 444
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	4 cut(s)	100, 262, 276, 315
Fnu4HI	GCNGC	4 cut(s)	72, 129, 132, 135
FokI	GGATG	1 cut(s)	253
Fsp4HI	GCNGC	4 cut(s)	72, 129, 132, 135
GluI	GCNGC	4 cut(s)	72, 129, 132, 135
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	122
Hin1II	CATG	4 cut(s)	104, 266, 280, 319
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HphI	GGTGA	3 cut(s)	199, 338, 409
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	1 cut(s)	161
Hpy188III	TCNNGA	2 cut(s)	233, 254
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	4 cut(s)	178, 275, 296, 347
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	3 cut(s)	74, 131, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 128, 134
HpyF3I	CTNAG	2 cut(s)	124, 158
Hsp92II	CATG	4 cut(s)	104, 266, 280, 319
Kzo9I	GATC	4 cut(s)	189, 229, 250, 396
LmnI	GCTCC	3 cut(s)	82, 106, 256
LpnPI	CCDG	7 cut(s)	43, 65, 239, 327, 354, 406, 433
Lsp1109I	GCAGC	4 cut(s)	58, 115, 121, 143
LweI	GCATC	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	4 cut(s)	191, 231, 252, 398
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	4 cut(s)	189, 229, 250, 396
MboII	GAAGA	3 cut(s)	30, 179, 311
MflI	RGATCY	1 cut(s)	396
MluCI	AATT	2 cut(s)	197, 224
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	5 cut(s)	97, 270, 278, 378, 425
Mph1103I	ATGCAT	1 cut(s)	268
MroXI	GAANNNNTTC	1 cut(s)	153
MseI	TTAA	2 cut(s)	411, 454
MspA1I	CMGCKG	1 cut(s)	134
MspR9I	CCNGG	2 cut(s)	342, 421
MvaI	CCWGG	2 cut(s)	342, 421
MwoI	GCNNNNNNNGC	3 cut(s)	10, 128, 134
NdeII	GATC	4 cut(s)	189, 229, 250, 396
NlaIII	CATG	4 cut(s)	104, 266, 280, 319
NlaIV	GGNNCC	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	326
NsiI	ATGCAT	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	153
PfoI	TCCNGGA	1 cut(s)	340
PkrI	GCNGC	4 cut(s)	73, 130, 133, 136
Psp6I	CCWGG	2 cut(s)	340, 419
PspGI	CCWGG	2 cut(s)	340, 419
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	396
PvuII	CAGCTG	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	411, 454
SatI	GCNGC	4 cut(s)	72, 129, 132, 135
Sau3AI	GATC	4 cut(s)	189, 229, 250, 396
Sau96I	GGNCC	1 cut(s)	120
ScrFI	CCNGG	2 cut(s)	342, 421
SetI	ASST	9 cut(s)	62, 87, 130, 136, 189, 328, 339, 408, 417
SfaNI	GCATC	1 cut(s)	275
SfcI	CTRYAG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	2 cut(s)	197, 224
SsiI	CCGC	1 cut(s)	109
SspI	AATATT	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	340, 419
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	370
TasI	AATT	2 cut(s)	197, 224
Tru1I	TTAA	2 cut(s)	411, 454
Tru9I	TTAA	2 cut(s)	411, 454
TscAI	CASTG	2 cut(s)	84, 375
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	4 cut(s)	71, 128, 131, 134
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	3 cut(s)	197, 202, 304
TspRI	CASTG	2 cut(s)	84, 375
XmnI	GAANNNNTTC	1 cut(s)	153
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.