RLG00000024778

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001589
Physical Location & Seq
Forward (+)
39082028 .. 39085612
3585 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024778

Sequence Viewer

Length: 870 bp
ATGTGGGAGATCCTAAGAATTTTAGATCGGTTTAGAGATTTGATTGTCGATAAATTGAGTGTGAAAATTGGAATAATTAACTTGTATTGCATTTTGTGTTCCGGTGCTTTATGTGATATTAACCAATTCATTGCTTCAGGAATTTGTCTTGGAGATGCAGGGAAGATTGTGATCTTAGACGGGTCCAATCGGATCTTAGCCATCGTCGACGTCCTTTTAGCCTCCGATAAGCGCGTAAACAACCGCCACAACTGGTACGCCATTCTACAGATCTTCCGGTTTTGGTCCATTTCTTCACTCACTGTGCGGCATGTTTCTTCTAATCCATCTCCCCTCCGCTTTCTTCACACCCTTTTCCGATCAGGTGCAGAACATGAGGAGCGGAAAGCAAGGGCCTTAGTTGCAGCTGCCACGGAGTTGGAAAGACTTCTCAGAAAGATTTTGGTAGAATTAAGCCGAGCATTCTGGGACAAGAGATCAGTCAAGAAGTCAATGGTGATGCACAGATTGCGAGGACTCAGGAGTTATGTGTTTAAAATTATGGGAGGCTGTGACAAGAAATTGTTTCCTTTGAAGCAAGGAGTGTTAACCCCAAGTTGTGTTCGCCTTTTACTCCACGGGGGAGCCTCATGCTTCCAAGGACATGGAAAGAGGAATAGTGAGCGAAGAAGGAAGTCTGTTCATGGATGCATTGTTAGTCCAGACCTTTTTGTGTTGAACTTGGTCATTGTTAAGAAAGGTGACAATGACCTTCCTGGACTGACTGATGTTGAAAAGCCAACAGTGAGAGGTCCAAAGAGGGCTTCCAAGATCCACAAGCTATTTAACCTCACCAAGGACGATGATGGTAGGAAGTATGTCAACACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

290

Amino Acids

32.71

Weight (kDa)

10.11

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6e PF01092 172 - 256 3.4e-25 Ribosomal protein S6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 213
AccBSI CCGCTC 1 cut(s) 382
AccI GTMKAC 1 cut(s) 207
AccII CGCG 1 cut(s) 234
AciI CCGC 4 cut(s) 244, 307, 337, 382
AclWI GGATC 3 cut(s) 4, 200, 805
AcsI RAATTY 2 cut(s) 18, 141
AcuI CTGAAG 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 1 cut(s) 835
AgsI TTSAA 3 cut(s) 574, 718, 773
AjnI CCWGG 1 cut(s) 754
AjuI GAANNNNNNNTTGG 2 cut(s) 787, 819
AluBI AGCT 2 cut(s) 407, 820
AluI AGCT 2 cut(s) 407, 820
AlwI GGATC 3 cut(s) 4, 200, 805
AoxI GGCC 1 cut(s) 393
ApeKI GCWGC 2 cut(s) 404, 407
ApoI RAATTY 2 cut(s) 18, 141
Asp700I GAANNNNTTC 1 cut(s) 426
AspLEI GCGC 1 cut(s) 234
AspS9I GGNCC 4 cut(s) 183, 285, 393, 791
AsuHPI GGTGA 3 cut(s) 508, 752, 823
AvaII GGWCC 3 cut(s) 183, 285, 791
BbvI GCAGC 2 cut(s) 394, 416
BccI CCATC 3 cut(s) 209, 334, 839
BciT130I CCWGG 1 cut(s) 756
BfmI CTRYAG 1 cut(s) 266
BglII AGATCT 1 cut(s) 270
BisI GCNGC 3 cut(s) 308, 405, 408
BlsI GCNGC 3 cut(s) 309, 406, 409
Bme1390I CCNGG 1 cut(s) 756
Bme18I GGWCC 3 cut(s) 183, 285, 791
BmgT120I GGNCC 4 cut(s) 183, 285, 393, 791
BmiI GGNNCC 2 cut(s) 184, 625
BmrFI CCNGG 1 cut(s) 756
BmsI GCATC 3 cut(s) 145, 489, 677
BsaBI GATNNNNATC 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 4 cut(s) 411, 616, 637, 834
BsaWI WCCGGW 2 cut(s) 101, 276
Bsc4I CCNNNNNNNGG 1 cut(s) 835
Bse1I ACTGG 1 cut(s) 257
Bse3DI GCAATG 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 170
BseBI CCWGG 1 cut(s) 756
BseDI CCNNGG 4 cut(s) 411, 616, 637, 834
BseGI GGATG 1 cut(s) 692
BseJI GATNNNNATC 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 835
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 2 cut(s) 445, 532
BseNI ACTGG 1 cut(s) 257
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 2 cut(s) 394, 416
BsgI GTGCAG 1 cut(s) 387
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 1 cut(s) 395
BsiSI CCGG 2 cut(s) 102, 277
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 1 cut(s) 835
BsmFI GGGAC 1 cut(s) 482
BsmI GAATGC 1 cut(s) 461
BsnI GGCC 1 cut(s) 395
Bsp143I GATC 8 cut(s) 9, 25, 171, 192, 270, 359, 476, 810
BspACI CCGC 4 cut(s) 244, 307, 337, 382
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 2 cut(s) 444, 531
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 2 cut(s) 184, 625
BspPI GGATC 3 cut(s) 4, 200, 805
BsrBI CCGCTC 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 129
BsrI ACTGG 1 cut(s) 257
BssECI CCNNGG 4 cut(s) 411, 616, 637, 834
BssMI GATC 8 cut(s) 9, 25, 171, 192, 270, 359, 476, 810
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 2 cut(s) 637, 834
Bst2UI CCWGG 1 cut(s) 756
Bst4CI ACNGT 2 cut(s) 304, 784
BstACI GRCGYC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 508
BstDEI CTNAG 6 cut(s) 14, 175, 196, 397, 431, 518
BstDSI CCRYGG 2 cut(s) 411, 616
BstENI CCTNNNNNAGG 1 cut(s) 833
BstF5I GGATG 1 cut(s) 692
BstFNI CGCG 1 cut(s) 234
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 8 cut(s) 12, 28, 174, 195, 273, 362, 479, 813
BstMBI GATC 8 cut(s) 9, 25, 171, 192, 270, 359, 476, 810
BstMWI GCNNNNNNNGC 2 cut(s) 401, 508
BstNI CCWGG 1 cut(s) 756
BstNSI RCATGY 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 754
BstSFI CTRYAG 1 cut(s) 266
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 394, 416
BstX2I RGATCY 4 cut(s) 9, 192, 270, 810
BstXI CCANNNNNNTGG 2 cut(s) 418, 644
BstYI RGATCY 4 cut(s) 9, 192, 270, 810
BsuRI GGCC 1 cut(s) 395
BtgI CCRYGG 2 cut(s) 411, 616
BtsCI GGATG 1 cut(s) 692
BtsIMutI CAGTG 2 cut(s) 300, 789
CfoI GCGC 1 cut(s) 234
Cfr13I GGNCC 4 cut(s) 183, 285, 393, 791
Csp6I GTAC 1 cut(s) 256
CviAII CATG 5 cut(s) 311, 374, 630, 644, 683
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 6 cut(s) 14, 175, 196, 397, 431, 518
DpnI GATC 8 cut(s) 11, 27, 173, 194, 272, 361, 478, 812
DpnII GATC 8 cut(s) 9, 25, 171, 192, 270, 359, 476, 810
DraI TTTAAA 1 cut(s) 535
Eco130I CCWWGG 2 cut(s) 637, 834
Eco47I GGWCC 3 cut(s) 183, 285, 791
Eco57I CTGAAG 1 cut(s) 120
EcoNI CCTNNNNNAGG 1 cut(s) 833
EcoO109I RGGNCCY 1 cut(s) 393
EcoRII CCWGG 1 cut(s) 754
EcoT14I CCWWGG 2 cut(s) 637, 834
EcoT22I ATGCAT 1 cut(s) 692
ErhI CCWWGG 2 cut(s) 637, 834
FaeI CATG 5 cut(s) 314, 377, 633, 647, 686
FaiI YATR 9 cut(s) 112, 312, 375, 528, 542, 631, 645, 684, 858
FaqI GGGAC 1 cut(s) 482
FatI CATG 5 cut(s) 310, 373, 629, 643, 682
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 3 cut(s) 308, 405, 408
FokI GGATG 1 cut(s) 699
Fsp4HI GCNGC 3 cut(s) 308, 405, 408
GlaI GCGC 1 cut(s) 233
GluI GCNGC 3 cut(s) 308, 405, 408
HaeIII GGCC 1 cut(s) 395
HapII CCGG 2 cut(s) 102, 277
HhaI GCGC 1 cut(s) 234
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 5 cut(s) 314, 377, 633, 647, 686
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HincII GTYRAC 3 cut(s) 208, 588, 862
HindII GTYRAC 3 cut(s) 208, 588, 862
HinfI GANTC 1 cut(s) 516
HpaI GTTAAC 1 cut(s) 588
HpaII CCGG 2 cut(s) 102, 277
HphI GGTGA 3 cut(s) 508, 752, 823
Hpy166II GTNNAC 4 cut(s) 208, 238, 588, 862
Hpy188I TCNGA 4 cut(s) 192, 226, 359, 434
Hpy188III TCNNGA 4 cut(s) 138, 484, 520, 701
Hpy8I GTNNAC 4 cut(s) 208, 238, 588, 862
Hpy99I CGWCG 2 cut(s) 209, 212
HpyAV CCTTC 2 cut(s) 663, 761
HpyCH4III ACNGT 2 cut(s) 304, 784
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 6 cut(s) 90, 158, 368, 404, 502, 690
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 508
HpyF3I CTNAG 6 cut(s) 14, 175, 196, 397, 431, 518
HpySE526I ACGT 1 cut(s) 210
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 5 cut(s) 314, 377, 633, 647, 686
HspAI GCGC 1 cut(s) 232
KspAI GTTAAC 1 cut(s) 588
Kzo9I GATC 8 cut(s) 9, 25, 171, 192, 270, 359, 476, 810
LmnI GCTCC 2 cut(s) 379, 623
Lsp1109I GCAGC 2 cut(s) 394, 416
LweI GCATC 3 cut(s) 145, 489, 677
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 2 cut(s) 551, 740
MalI GATC 8 cut(s) 11, 27, 173, 194, 272, 361, 478, 812
MbiI CCGCTC 1 cut(s) 382
MboI GATC 8 cut(s) 9, 25, 171, 192, 270, 359, 476, 810
MboII GAAGA 6 cut(s) 175, 265, 285, 309, 335, 678
MflI RGATCY 4 cut(s) 9, 192, 270, 810
MluCI AATT 9 cut(s) 18, 53, 66, 75, 125, 141, 449, 537, 560
MlyI GAGTC 1 cut(s) 510
MmeI TCCRAC 1 cut(s) 399
Mph1103I ATGCAT 1 cut(s) 692
MroXI GAANNNNTTC 1 cut(s) 426
MseI TTAA 8 cut(s) 78, 120, 452, 534, 587, 732, 825, 868
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 2 cut(s) 102, 277
MspR9I CCNGG 1 cut(s) 756
Mva1269I GAATGC 1 cut(s) 461
MvaI CCWGG 1 cut(s) 756
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 401, 508
NdeII GATC 8 cut(s) 9, 25, 171, 192, 270, 359, 476, 810
NlaIII CATG 5 cut(s) 314, 377, 633, 647, 686
NlaIV GGNNCC 2 cut(s) 184, 625
NmeAIII GCCGAG 1 cut(s) 482
NmuCI GTSAC 2 cut(s) 551, 740
NsiI ATGCAT 1 cut(s) 692
NspI RCATGY 1 cut(s) 314
PctI GAATGC 1 cut(s) 461
PdmI GAANNNNTTC 1 cut(s) 426
PfoI TCCNGGA 1 cut(s) 754
PkrI GCNGC 3 cut(s) 309, 406, 409
PleI GAGTC 1 cut(s) 510
PpsI GAGTC 1 cut(s) 510
Psp6I CCWGG 1 cut(s) 754
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 2 cut(s) 184, 625
PspPI GGNCC 4 cut(s) 183, 285, 393, 791
PsuI RGATCY 4 cut(s) 9, 192, 270, 810
PvuII CAGCTG 1 cut(s) 407
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SalI GTCGAC 1 cut(s) 206
SaqAI TTAA 8 cut(s) 78, 120, 452, 534, 587, 732, 825, 868
SatI GCNGC 3 cut(s) 308, 405, 408
Sau3AI GATC 8 cut(s) 9, 25, 171, 192, 270, 359, 476, 810
Sau96I GGNCC 4 cut(s) 183, 285, 393, 791
SchI GAGTC 1 cut(s) 510
ScrFI CCNGG 1 cut(s) 756
SetI ASST 9 cut(s) 213, 367, 409, 708, 742, 753, 793, 822, 831
SfaNI GCATC 3 cut(s) 145, 489, 677
SfcI CTRYAG 1 cut(s) 266
SgrDI CGTCGACG 1 cut(s) 206
SinI GGWCC 3 cut(s) 183, 285, 791
Sse9I AATT 9 cut(s) 18, 53, 66, 75, 125, 141, 449, 537, 560
SsiI CCGC 4 cut(s) 244, 307, 337, 382
StyD4I CCNGG 1 cut(s) 754
StyI CCWWGG 2 cut(s) 637, 834
TaaI ACNGT 2 cut(s) 304, 784
TaiI ACGT 1 cut(s) 213
TaqI TCGA 2 cut(s) 48, 207
TasI AATT 9 cut(s) 18, 53, 66, 75, 125, 141, 449, 537, 560
TauI GCSGC 1 cut(s) 310
Tru1I TTAA 8 cut(s) 78, 120, 452, 534, 587, 732, 825, 868
Tru9I TTAA 8 cut(s) 78, 120, 452, 534, 587, 732, 825, 868
TscAI CASTG 2 cut(s) 307, 789
TseFI GTSAC 2 cut(s) 551, 740
TseI GCWGC 2 cut(s) 404, 407
Tsp45I GTSAC 2 cut(s) 551, 740
TspDTI ATGAA 2 cut(s) 118, 671
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 2 cut(s) 307, 789
VpaK11BI GGWCC 3 cut(s) 183, 285, 791
XagI CCTNNNNNAGG 1 cut(s) 833
XapI RAATTY 2 cut(s) 18, 141
XceI RCATGY 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 207
XmnI GAANNNNTTC 1 cut(s) 426
ZraI GACGTC 1 cut(s) 211
Zsp2I ATGCAT 1 cut(s) 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.