Rroxscaffold_2G00131400

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001589
Physical Location & Seq
Reverse (-)
68007095 .. 68009311
2217 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00131400.1

Sequence Viewer

Length: 747 bp
ATGAAGTTCAATATCGCGAATCCCACCACTGGGTGCCAGAAGAAGCTCGAGATCGACGATGATACCAAGCTCCGAGCATTCTGGGACAAGAGGATCAGTCAAGAAGTCAATGGTGATGCACTTGGCGAGGAGTTCAGGGGTTATGTGTTCAAAATCATGGGAGGCTGCGACAAGCAAGGTTTTCCTATGAAGCAAGGAGTGTTAACCCCAGGGCGTGTTCGCCTTTTGCTCCACAGGGGAACCCCATGCTTCCGAGGATATGGAAGGAGGAATGGTGAGCGAAGAAGGAAGTCTGTTCGTGGATGCATTGTTAGTCCAGACCTCTCTGTGTTGAACTTGGTTATTGTTAAGAAAGGTGACAATGACCTTCCTGGACTGACTGATGTTGAAAAGCCAAGAATGAGAGGTCCAAAGAGGGCTTCCAAGATTCGCAAGCTATTTAACCTCACTAAGGAGGATGATGTTCGGAAGTATGTCAACACTTACCGCAGAAAATTCACATCCAAAACTGGCAAGAATTGCAGCAAAGCTCCCAAAATTCAGAGGCTGGTTACTCCTTTGACTTTACAGAGGAAGCGAGCAAGGATTGCAGAGAAGAAGAAGAGAGTTGTAAAGGCCAAGTCAGAGGCTGCAGAGTATCAGAAGTTACTTGCTTCCAGGTTGAAGGAGCAGCGTGAGCGCCGCAGTGAGAGCTTAGCCAAGAAGAGATCAAGACTCTCCTCTGCCACTAAGCCATCTGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

248

Amino Acids

28.33

Weight (kDa)

10.7

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6e PF01092 1 - 128 1.1e-52 Ribosomal protein S6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 33
AccII CGCG 1 cut(s) 17
AciI CCGC 2 cut(s) 487, 682
AclWI GGATC 1 cut(s) 101
AcsI RAATTY 2 cut(s) 494, 537
AdeI CACNNNGTG 1 cut(s) 33
AfiI CCNNNNNNNGG 3 cut(s) 29, 30, 451
AgsI TTSAA 5 cut(s) 10, 151, 334, 389, 664
AjnI CCWGG 3 cut(s) 208, 370, 656
AjuI GAANNNNNNNTTGG 2 cut(s) 403, 435
AluBI AGCT 5 cut(s) 46, 70, 436, 530, 693
AluI AGCT 5 cut(s) 46, 70, 436, 530, 693
AlwI GGATC 1 cut(s) 101
AlwNI CAGNNNCTG 2 cut(s) 547, 629
Ama87I CYCGRG 1 cut(s) 47
AoxI GGCC 1 cut(s) 615
ApeKI GCWGC 5 cut(s) 165, 522, 629, 670, 740
ApoI RAATTY 2 cut(s) 494, 537
AspLEI GCGC 1 cut(s) 681
AspS9I GGNCC 1 cut(s) 407
AsuHPI GGTGA 3 cut(s) 125, 287, 368
AvaI CYCGRG 1 cut(s) 47
AvaII GGWCC 1 cut(s) 407
BanI GGYRCC 1 cut(s) 33
BbvI GCAGC 5 cut(s) 152, 534, 616, 682, 727
BccI CCATC 1 cut(s) 742
BciT130I CCWGG 3 cut(s) 210, 372, 658
BfmI CTRYAG 1 cut(s) 630
BfoI RGCGCY 1 cut(s) 682
BisI GCNGC 6 cut(s) 166, 523, 630, 671, 682, 741
BlpI GCTNAGC 1 cut(s) 694
BlsI GCNGC 6 cut(s) 167, 524, 631, 672, 683, 742
Bme1390I CCNGG 3 cut(s) 210, 372, 658
Bme18I GGWCC 1 cut(s) 407
BmeT110I CYCGRG 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 407
BmiI GGNNCC 2 cut(s) 35, 241
BmrFI CCNGG 3 cut(s) 210, 372, 658
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 2 cut(s) 106, 293
BmuI ACTGGG 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 694
BsaJI CCNNGG 3 cut(s) 208, 209, 253
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 30, 451
Bse1I ACTGG 2 cut(s) 34, 514
BseBI CCWGG 3 cut(s) 210, 372, 658
BseDI CCNNGG 3 cut(s) 208, 209, 253
BseGI GGATG 3 cut(s) 308, 463, 500
BseLI CCNNNNNNNGG 3 cut(s) 29, 30, 451
BseNI ACTGG 2 cut(s) 34, 514
BseRI GAGGAG 2 cut(s) 143, 709
BseXI GCAGC 5 cut(s) 152, 534, 616, 682, 727
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 1 cut(s) 617
BshNI GGYRCC 1 cut(s) 33
BsiHKCI CYCGRG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 3 cut(s) 29, 30, 451
BsmFI GGGAC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 77
BsnI GGCC 1 cut(s) 617
BsoBI CYCGRG 1 cut(s) 47
Bsp143I GATC 3 cut(s) 51, 93, 707
Bsp1720I GCTNAGC 1 cut(s) 694
Bsp68I TCGCGA 1 cut(s) 17
BspACI CCGC 2 cut(s) 487, 682
BspANI GGCC 1 cut(s) 617
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 2 cut(s) 35, 241
BspMAI CTGCAG 1 cut(s) 634
BspPI GGATC 1 cut(s) 101
BspT107I GGYRCC 1 cut(s) 33
BsrI ACTGG 2 cut(s) 34, 514
BssECI CCNNGG 3 cut(s) 208, 209, 253
BssMI GATC 3 cut(s) 51, 93, 707
Bst2UI CCWGG 3 cut(s) 210, 372, 658
Bst6I CTCTTC 2 cut(s) 596, 698
BstAPI GCANNNNNTGC 2 cut(s) 519, 587
BstC8I GCNNGC 2 cut(s) 434, 579
BstDEI CTNAG 4 cut(s) 450, 694, 729, 744
BstENI CCTNNNNNAGG 1 cut(s) 449
BstF5I GGATG 3 cut(s) 308, 463, 500
BstFNI CGCG 1 cut(s) 17
BstH2I RGCGCY 1 cut(s) 682
BstHHI GCGC 1 cut(s) 681
BstKTI GATC 3 cut(s) 54, 96, 710
BstMBI GATC 3 cut(s) 51, 93, 707
BstMWI GCNNNNNNNGC 4 cut(s) 519, 587, 676, 690
BstNI CCWGG 3 cut(s) 210, 372, 658
BstSCI CCNGG 3 cut(s) 208, 370, 656
BstSFI CTRYAG 1 cut(s) 630
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 5 cut(s) 152, 534, 616, 682, 727
BsuRI GGCC 1 cut(s) 617
BtsCI GGATG 3 cut(s) 308, 463, 500
BtsI GCAGTG 1 cut(s) 691
BtsIMutI CAGTG 2 cut(s) 27, 691
BtuMI TCGCGA 1 cut(s) 17
Cac8I GCNNGC 2 cut(s) 434, 579
CaiI CAGNNNCTG 2 cut(s) 547, 629
CfoI GCGC 1 cut(s) 681
Cfr13I GGNCC 1 cut(s) 407
CviAII CATG 2 cut(s) 157, 246
DdeI CTNAG 4 cut(s) 450, 694, 729, 744
DpnI GATC 3 cut(s) 53, 95, 709
DpnII GATC 3 cut(s) 51, 93, 707
DraIII CACNNNGTG 1 cut(s) 33
Eam1104I CTCTTC 2 cut(s) 596, 698
EarI CTCTTC 2 cut(s) 596, 698
Eco47I GGWCC 1 cut(s) 407
Eco88I CYCGRG 1 cut(s) 47
EcoNI CCTNNNNNAGG 1 cut(s) 449
EcoRII CCWGG 3 cut(s) 208, 370, 656
EcoT22I ATGCAT 1 cut(s) 308
FaeI CATG 2 cut(s) 160, 249
FaiI YATR 6 cut(s) 144, 158, 188, 247, 261, 474
FaqI GGGAC 1 cut(s) 98
FatI CATG 2 cut(s) 156, 245
Fnu4HI GCNGC 6 cut(s) 166, 523, 630, 671, 682, 741
FokI GGATG 3 cut(s) 315, 470, 487
Fsp4HI GCNGC 6 cut(s) 166, 523, 630, 671, 682, 741
GlaI GCGC 1 cut(s) 680
GluI GCNGC 6 cut(s) 166, 523, 630, 671, 682, 741
HaeII RGCGCY 1 cut(s) 682
HaeIII GGCC 1 cut(s) 617
HhaI GCGC 1 cut(s) 681
Hin1II CATG 2 cut(s) 160, 249
Hin6I GCGC 1 cut(s) 679
HinP1I GCGC 1 cut(s) 679
HincII GTYRAC 2 cut(s) 204, 478
HindII GTYRAC 2 cut(s) 204, 478
HinfI GANTC 3 cut(s) 19, 427, 714
HpaI GTTAAC 1 cut(s) 204
HphI GGTGA 3 cut(s) 125, 287, 368
Hpy166II GTNNAC 2 cut(s) 204, 478
Hpy188I TCNGA 6 cut(s) 74, 254, 468, 543, 625, 642
Hpy188III TCNNGA 5 cut(s) 16, 49, 101, 317, 711
Hpy8I GTNNAC 2 cut(s) 204, 478
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 4 cut(s) 258, 279, 377, 658
HpyCH4V TGCA 5 cut(s) 119, 306, 522, 590, 632
HpyF10VI GCNNNNNNNGC 4 cut(s) 519, 587, 676, 690
HpyF3I CTNAG 4 cut(s) 450, 694, 729, 744
Hsp92II CATG 2 cut(s) 160, 249
HspAI GCGC 1 cut(s) 679
KspAI GTTAAC 1 cut(s) 204
Kzo9I GATC 3 cut(s) 51, 93, 707
LmnI GCTCC 4 cut(s) 75, 234, 535, 667
Lsp1109I GCAGC 5 cut(s) 152, 534, 616, 682, 727
LweI GCATC 2 cut(s) 106, 293
MaeIII GTNAC 3 cut(s) 356, 550, 645
MalI GATC 3 cut(s) 53, 95, 709
MboI GATC 3 cut(s) 51, 93, 707
MboII GAAGA 6 cut(s) 52, 294, 607, 610, 613, 715
MluCI AATT 3 cut(s) 494, 517, 537
MlyI GAGTC 1 cut(s) 708
Mph1103I ATGCAT 1 cut(s) 308
MseI TTAA 3 cut(s) 203, 348, 441
MspR9I CCNGG 3 cut(s) 210, 372, 658
Mva1269I GAATGC 1 cut(s) 77
MvaI CCWGG 3 cut(s) 210, 372, 658
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 4 cut(s) 519, 587, 676, 690
NdeII GATC 3 cut(s) 51, 93, 707
NlaIII CATG 2 cut(s) 160, 249
NlaIV GGNNCC 2 cut(s) 35, 241
NmuCI GTSAC 1 cut(s) 356
NruI TCGCGA 1 cut(s) 17
NsiI ATGCAT 1 cut(s) 308
PaeR7I CTCGAG 1 cut(s) 47
PasI CCCWGGG 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PctI GAATGC 1 cut(s) 77
PfeI GAWTC 2 cut(s) 19, 427
PfoI TCCNGGA 1 cut(s) 370
PkrI GCNGC 6 cut(s) 167, 524, 631, 672, 683, 742
PleI GAGTC 1 cut(s) 708
PpsI GAGTC 1 cut(s) 708
Psp6I CCWGG 3 cut(s) 208, 370, 656
PspGI CCWGG 3 cut(s) 208, 370, 656
PspN4I GGNNCC 2 cut(s) 35, 241
PspPI GGNCC 1 cut(s) 407
PstI CTGCAG 1 cut(s) 634
PstNI CAGNNNCTG 2 cut(s) 547, 629
RruI TCGCGA 1 cut(s) 17
SaqAI TTAA 3 cut(s) 203, 348, 441
SatI GCNGC 6 cut(s) 166, 523, 630, 671, 682, 741
Sau3AI GATC 3 cut(s) 51, 93, 707
Sau96I GGNCC 1 cut(s) 407
SchI GAGTC 1 cut(s) 708
ScrFI CCNGG 3 cut(s) 210, 372, 658
SfaNI GCATC 2 cut(s) 106, 293
SfcI CTRYAG 1 cut(s) 630
Sfr274I CTCGAG 1 cut(s) 47
SinI GGWCC 1 cut(s) 407
SlaI CTCGAG 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 3 cut(s) 494, 517, 537
SsiI CCGC 2 cut(s) 487, 682
StyD4I CCNGG 3 cut(s) 208, 370, 656
TaqI TCGA 2 cut(s) 48, 54
TasI AATT 3 cut(s) 494, 517, 537
TauI GCSGC 1 cut(s) 684
TfiI GAWTC 2 cut(s) 19, 427
Tru1I TTAA 3 cut(s) 203, 348, 441
Tru9I TTAA 3 cut(s) 203, 348, 441
TscAI CASTG 2 cut(s) 34, 691
TseFI GTSAC 1 cut(s) 356
TseI GCWGC 5 cut(s) 165, 522, 629, 670, 740
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 2 cut(s) 17, 203
TspRI CASTG 2 cut(s) 34, 691
VpaK11BI GGWCC 1 cut(s) 407
XagI CCTNNNNNAGG 1 cut(s) 449
XapI RAATTY 2 cut(s) 494, 537
XhoI CTCGAG 1 cut(s) 47
Zsp2I ATGCAT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.