Rh7DG458600

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001589
Physical Location & Seq
Forward (+)
65145637 .. 65147754
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG458600.1

Sequence Viewer

Length: 594 bp
ATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTGACCCCTGGTCGAGTTCGCCTCTTGCTCCACCGAGGAACCCCTTGCTTCCGTGGTCACGGAAGGAGGAACGGAGAGAGGAGGAGGAAGTCTGTCCGTGGGTGCATTGTCAGTCCTGATCTTTCTGTTCTGAACTTGGTTATTGTGAAGAAGGGTGACAATGATCTTCCTGGTCTGACTGACACTGAGAAGCCTAGGATGAGAGGTCCAAAAAGGGCATCTAAAATCCGAAAGCTCTTCAATCTCTCAAAGGAGGATGATGTTCGAAAGTATGTGAACACATACCGTAGATCATTCACATCAAAGACCGGTAAGAAGGTGAGCAAGGCTCCTAAGATTCAGAGATTGGTCACTCCTTTGACCCTTCAAAGGAAGCGTGCAAGAATTGCAGACAAGAAGAAGAGGGTTGTGAAAGCCAAGTCTGAGGCTGCTGAGTACCAGAAACTCCTTGCCTCAAGATTGAAGGAACAAAGAGAACGACGCAGTGAGAGCTTGGCCAAGAAAAGGTCCAGGCTGTCTGCAGCCTCAAAGCCCTCTGTTACTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

197

Amino Acids

22.33

Weight (kDa)

11.44

Isoelectric Point (pI)

42.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6e PF01092 1 - 76 4.6e-29 Ribosomal protein S6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 540
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 2 cut(s) 414, 549
AgeI ACCGGT 1 cut(s) 353
AgsI TTSAA 3 cut(s) 286, 413, 508
AhdI GACNNNNNGTC 1 cut(s) 54
AjnI CCWGG 3 cut(s) 52, 214, 554
AluBI AGCT 2 cut(s) 280, 537
AluI AGCT 2 cut(s) 280, 537
AoxI GGCC 1 cut(s) 540
ApeKI GCWGC 2 cut(s) 473, 566
AsiGI ACCGGT 1 cut(s) 353
AspA2I CCTAGG 1 cut(s) 239
AspS9I GGNCC 2 cut(s) 251, 552
AsuHPI GGTGA 2 cut(s) 212, 376
AsuII TTCGAA 1 cut(s) 310
AvaII GGWCC 2 cut(s) 251, 552
AvrII CCTAGG 1 cut(s) 239
BalI TGGCCA 1 cut(s) 542
BbvI GCAGC 2 cut(s) 460, 578
BciT130I CCWGG 3 cut(s) 54, 216, 556
BfaI CTAG 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 564
BisI GCNGC 2 cut(s) 474, 567
BlnI CCTAGG 1 cut(s) 239
BlsI GCNGC 2 cut(s) 475, 568
Bme1390I CCNGG 3 cut(s) 54, 216, 556
Bme18I GGWCC 2 cut(s) 251, 552
BmeRI GACNNNNNGTC 1 cut(s) 54
BmgT120I GGNCC 2 cut(s) 251, 552
BmiI GGNNCC 3 cut(s) 26, 85, 375
BmrFI CCNGG 3 cut(s) 54, 216, 556
BmsI GCATC 1 cut(s) 272
BplI GAGNNNNNCTC 4 cut(s) 51, 83, 358, 390
Bpu14I TTCGAA 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 484
BsaJI CCNNGG 5 cut(s) 52, 79, 97, 142, 239
BsaWI WCCGGW 1 cut(s) 353
Bsc4I CCNNNNNNNGG 2 cut(s) 414, 549
Bse118I RCCGGY 1 cut(s) 353
BseBI CCWGG 3 cut(s) 54, 216, 556
BseDI CCNNGG 5 cut(s) 52, 79, 97, 142, 239
BseGI GGATG 2 cut(s) 249, 307
BseLI CCNNNNNNNGG 2 cut(s) 414, 549
BseMII CTCAG 3 cut(s) 222, 459, 468
BseRI GAGGAG 2 cut(s) 139, 142
BseXI GCAGC 2 cut(s) 460, 578
BshFI GGCC 1 cut(s) 542
BshTI ACCGGT 1 cut(s) 353
BsiSI CCGG 1 cut(s) 354
BslI CCNNNNNNNGG 2 cut(s) 414, 549
BsnI GGCC 1 cut(s) 542
Bsp119I TTCGAA 1 cut(s) 310
Bsp143I GATC 3 cut(s) 163, 208, 335
BspANI GGCC 1 cut(s) 542
BspCNI CTCAG 3 cut(s) 223, 460, 469
BspLI GGNNCC 3 cut(s) 26, 85, 375
BspMAI CTGCAG 1 cut(s) 568
BspQI GCTCTTC 1 cut(s) 287
BspT104I TTCGAA 1 cut(s) 310
BsrFI RCCGGY 1 cut(s) 353
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 5 cut(s) 52, 79, 97, 142, 239
BssMI GATC 3 cut(s) 163, 208, 335
BssT1I CCWWGG 1 cut(s) 239
Bst2UI CCWGG 3 cut(s) 54, 216, 556
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 2 cut(s) 287, 440
BstAPI GCANNNNNTGC 1 cut(s) 431
BstBI TTCGAA 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 4 cut(s) 231, 378, 468, 477
BstDSI CCRYGG 2 cut(s) 97, 142
BstF5I GGATG 2 cut(s) 249, 307
BstKTI GATC 3 cut(s) 166, 211, 338
BstMBI GATC 3 cut(s) 163, 208, 335
BstMWI GCNNNNNNNGC 2 cut(s) 431, 534
BstNI CCWGG 3 cut(s) 54, 216, 556
BstSCI CCNGG 3 cut(s) 52, 214, 554
BstSFI CTRYAG 1 cut(s) 564
BstV1I GCAGC 2 cut(s) 460, 578
BsuRI GGCC 1 cut(s) 542
BtgI CCRYGG 2 cut(s) 97, 142
BtsCI GGATG 2 cut(s) 249, 307
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 2 cut(s) 228, 535
Cac8I GCNNGC 1 cut(s) 423
Cfr10I RCCGGY 1 cut(s) 353
Cfr13I GGNCC 2 cut(s) 251, 552
CseI GACGC 1 cut(s) 534
Csp6I GTAC 1 cut(s) 481
CspAI ACCGGT 1 cut(s) 353
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 4 cut(s) 231, 378, 468, 477
DpnI GATC 3 cut(s) 165, 210, 337
DpnII GATC 3 cut(s) 163, 208, 335
DriI GACNNNNNGTC 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 2 cut(s) 287, 440
Eam1105I GACNNNNNGTC 1 cut(s) 54
EarI CTCTTC 2 cut(s) 287, 440
Eco130I CCWWGG 1 cut(s) 239
Eco47I GGWCC 2 cut(s) 251, 552
EcoRII CCWGG 3 cut(s) 52, 214, 554
EcoT14I CCWWGG 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 239
FaiI YATR 2 cut(s) 318, 328
Fnu4HI GCNGC 2 cut(s) 474, 567
FokI GGATG 2 cut(s) 256, 314
Fsp4HI GCNGC 2 cut(s) 474, 567
FspBI CTAG 1 cut(s) 240
GluI GCNGC 2 cut(s) 474, 567
HaeIII GGCC 1 cut(s) 542
HapII CCGG 1 cut(s) 354
HgaI GACGC 1 cut(s) 534
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 1 cut(s) 382
HpaII CCGG 1 cut(s) 354
HphI GGTGA 2 cut(s) 212, 376
Hpy166II GTNNAC 2 cut(s) 48, 322
Hpy188I TCNGA 5 cut(s) 177, 222, 275, 387, 469
Hpy188III TCNNGA 2 cut(s) 161, 501
Hpy8I GTNNAC 2 cut(s) 48, 322
Hpy99I CGWCG 1 cut(s) 528
HpyAV CCTTC 5 cut(s) 102, 190, 355, 419, 502
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4V TGCA 4 cut(s) 150, 425, 434, 566
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 534
HpyF3I CTNAG 4 cut(s) 231, 378, 468, 477
Kzo9I GATC 3 cut(s) 163, 208, 335
LguI GCTCTTC 1 cut(s) 287
LmnI GCTCC 2 cut(s) 78, 379
Lsp1109I GCAGC 2 cut(s) 460, 578
LweI GCATC 1 cut(s) 272
MaeI CTAG 1 cut(s) 240
MaeIII GTNAC 5 cut(s) 11, 101, 200, 394, 583
MalI GATC 3 cut(s) 165, 210, 337
MboI GATC 3 cut(s) 163, 208, 335
MboII GAAGA 5 cut(s) 203, 205, 274, 454, 457
MlsI TGGCCA 1 cut(s) 542
MluCI AATT 1 cut(s) 429
MluNI TGGCCA 1 cut(s) 542
Mox20I TGGCCA 1 cut(s) 542
MscI TGGCCA 1 cut(s) 542
MseI TTAA 1 cut(s) 592
Msp20I TGGCCA 1 cut(s) 542
MspI CCGG 1 cut(s) 354
MspR9I CCNGG 3 cut(s) 54, 216, 556
MvaI CCWGG 3 cut(s) 54, 216, 556
MwoI GCNNNNNNNGC 2 cut(s) 431, 534
NdeII GATC 3 cut(s) 163, 208, 335
NlaIV GGNNCC 3 cut(s) 26, 85, 375
NmuCI GTSAC 4 cut(s) 11, 101, 200, 394
NspV TTCGAA 1 cut(s) 310
PciSI GCTCTTC 1 cut(s) 287
PfeI GAWTC 1 cut(s) 382
PinAI ACCGGT 1 cut(s) 353
PkrI GCNGC 2 cut(s) 475, 568
Psp6I CCWGG 3 cut(s) 52, 214, 554
PspGI CCWGG 3 cut(s) 52, 214, 554
PspN4I GGNNCC 3 cut(s) 26, 85, 375
PspPI GGNCC 2 cut(s) 251, 552
PstI CTGCAG 1 cut(s) 568
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
SapI GCTCTTC 1 cut(s) 287
SaqAI TTAA 1 cut(s) 592
SatI GCNGC 2 cut(s) 474, 567
Sau3AI GATC 3 cut(s) 163, 208, 335
Sau96I GGNCC 2 cut(s) 251, 552
ScrFI CCNGG 3 cut(s) 54, 216, 556
SetI ASST 5 cut(s) 253, 282, 366, 539, 554
SfaNI GCATC 1 cut(s) 272
SfcI CTRYAG 1 cut(s) 564
SfuI TTCGAA 1 cut(s) 310
SinI GGWCC 2 cut(s) 251, 552
SmlI CTYRAG 1 cut(s) 499
SmoI CTYRAG 1 cut(s) 499
Sse9I AATT 1 cut(s) 429
SspMI CTAG 1 cut(s) 240
StyD4I CCNGG 3 cut(s) 52, 214, 554
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 1 cut(s) 332
TaqI TCGA 2 cut(s) 58, 310
TasI AATT 1 cut(s) 429
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 1 cut(s) 592
Tru9I TTAA 1 cut(s) 592
TscAI CASTG 2 cut(s) 235, 535
TseFI GTSAC 4 cut(s) 11, 101, 200, 394
TseI GCWGC 2 cut(s) 473, 566
Tsp45I GTSAC 4 cut(s) 11, 101, 200, 394
TspDTI ATGAA 1 cut(s) 47
TspGWI ACGGA 4 cut(s) 86, 120, 131, 132
TspRI CASTG 2 cut(s) 235, 535
VpaK11BI GGWCC 2 cut(s) 251, 552
XmaJI CCTAGG 1 cut(s) 239
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.