Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001589

Physical Location & Seq

Genomic Coordinates Reverse (-)

15345979 .. 15347804

Gene Structure 1826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G31700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAAGTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACTACGTGCGTTTTACGACAAGAGAATCTCTCAAGAAGTCAGTGGAGATGCTTTGGGCGAGGAGTTCAAAGGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGGAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAAAGTCTGTTCGTGGTTGCATTGTGAGCCCTGATCTCTCTGTTCTGAACCTTGTCATTGTGAAGAAGGGTGAGAACGATCTTCCTGGGCTTACCGATACTGAGAAGCCAAGAATGAGAGGACCAAAGAGAGCCTCCAAGATCCGTAAACTGTTTAACCTCAAGAAGGAAGATGATGTCAGGACCTATGTCAACACTTACCGCCGCAAGTTCACAAACAAGAAGGGCAAGGAAGTTAGCAAAGCCCCTAAGATCCAGAGGCTTGTGACCCCATTGACTCTTCAGAGGAAGAGAGCTAGAATTGCTGACAAGAAGAAGAAAATTGCTAAGGCTAATTCTGATGCTGCTGATTACCAGAAGCTTCTCGCCTCGAGGTTGAAGGAACAGCGTGACAGGAGGAGTGAGAGTTTGGCAAAGAAGAGGTCGAGACTCTCTTCTGCTGCTGCCAAGCCCTCTGTCACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042221 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Ribosomal_S6e

Protein Analysis

250

Amino Acids

28.37

Weight (kDa)

10.61

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S6e	PF01092	1 - 66	3.5e-22	Ribosomal protein S6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31700 AT4G31700 AT5G10360 AT5G10360
fragaria_vesca	FvH4_1g20340 FvH4_5g36790 FvH4_5g36790
malus_domestica	MD08G1186900.v1.1 MD15G1372800.v1.1
prunus_persica	Prupe.1G521400_v2.0.a1 Prupe.1G521400_v2.0.a1 Prupe.6G192100_v2.0.a1
pyrus_communis	pycom08g16070 pycom15g33380
rosa_chinensis	RchiOBHm_Chr1g0378681 RchiOBHm_Chr2g0112471 RchiOBHm_Chr5g0001121 RchiOBHm_Chr5g0001131 RchiOBHm_Chr7g0242901
rosa_laevigata	RLG00000000869 RLG00000017983 RLG00000024778
rosa_multiflora	Rmu_sc0000556.1_g000006 Rmu_sc0001706.1_g000036 Rmu_sc0001758.1_g000027 Rmu_sc0004165.1_g000057
rosa_roxburghii	Rroxscaffold_2G00131400 Rroxscaffold_3G00222260 Rroxscaffold_4G00307670 Rroxscaffold_6G00413940
rosa_rugosa	Rorug02G0106700 Rorug02G0181100 Rorug07G0291700 Rorug07G0317600 Rorug07G0317700
rosa_samantha	Rh2DG241800 Rh5BG035200 Rh5CG009600 Rh6AG374700 Rh7AG084600 Rh7AG473400 Rh7BG443300 Rh7CG085600 Rh7CG490300 Rh7DG086700 Rh7DG458600
rosa_wichuraiana	Rw2G018140 Rw6G032660 Rw7G039080 Rw7G039370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	655
AccB7I	CCANNNNNTGG	1 cut(s)	29
AciI	CCGC	2 cut(s)	487, 490
AclI	AACGTT	1 cut(s)	12
AclWI	GGATC	2 cut(s)	421, 532
AcuI	CTGAAG	2 cut(s)	235, 551
AfiI	CCNNNNNNNGG	2 cut(s)	29, 451
AgsI	TTSAA	4 cut(s)	10, 136, 151, 664
AjnI	CCWGG	2 cut(s)	208, 370
AluBI	AGCT	4 cut(s)	46, 581, 646, 749
AluI	AGCT	4 cut(s)	46, 581, 646, 749
Alw26I	GTCTC	1 cut(s)	706
AlwI	GGATC	2 cut(s)	421, 532
Ama87I	CYCGRG	2 cut(s)	47, 655
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	3 cut(s)	629, 725, 728
ArsI	GACNNNNNNTTYG	2 cut(s)	692, 724
AspS9I	GGNCC	2 cut(s)	407, 468
AsuHPI	GGTGA	3 cut(s)	224, 287, 368
AvaI	CYCGRG	2 cut(s)	47, 655
AvaII	GGWCC	2 cut(s)	407, 468
BanII	GRGCYC	1 cut(s)	317
BbvI	GCAGC	3 cut(s)	616, 712, 715
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	2 cut(s)	210, 372
BciVI	GTATCC	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	706
BfaI	CTAG	1 cut(s)	582
BfuI	GTATCC	1 cut(s)	134
BisI	GCNGC	4 cut(s)	490, 630, 726, 729
BlsI	GCNGC	4 cut(s)	491, 631, 727, 730
Bme1390I	CCNGG	2 cut(s)	210, 372
Bme18I	GGWCC	2 cut(s)	407, 468
BmeT110I	CYCGRG	2 cut(s)	47, 655
BmgT120I	GGNCC	2 cut(s)	407, 468
BmrFI	CCNGG	2 cut(s)	210, 372
BmsI	GCATC	3 cut(s)	23, 106, 616
BoxI	GACNNNNGTC	1 cut(s)	473
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BpmI	CTGGAG	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	2 cut(s)	84, 431
BsaAI	YACGTR	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	235, 371
BsaXI	ACNNNNNCTCC	4 cut(s)	259, 289, 676, 706
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 451
Bse1I	ACTGG	2 cut(s)	34, 277
BseBI	CCWGG	2 cut(s)	210, 372
BseDI	CCNNGG	2 cut(s)	235, 371
BseGI	GGATG	1 cut(s)	38
BseLI	CCNNNNNNNGG	2 cut(s)	29, 451
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	2 cut(s)	34, 277
BseRI	GAGGAG	3 cut(s)	143, 295, 697
BseXI	GCAGC	3 cut(s)	616, 712, 715
BshFI	GGCC	1 cut(s)	213
BsiHKCI	CYCGRG	2 cut(s)	47, 655
BslI	CCNNNNNNNGG	2 cut(s)	29, 451
BsmAI	GTCTC	1 cut(s)	706
BsnI	GGCC	1 cut(s)	213
BsoBI	CYCGRG	2 cut(s)	47, 655
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	6 cut(s)	51, 153, 319, 364, 426, 537
BspACI	CCGC	2 cut(s)	487, 490
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	379
BspPI	GGATC	2 cut(s)	421, 532
BsrI	ACTGG	2 cut(s)	34, 277
BssECI	CCNNGG	2 cut(s)	235, 371
BssMI	GATC	6 cut(s)	51, 153, 319, 364, 426, 537
Bst2UI	CCWGG	2 cut(s)	210, 372
Bst4CI	ACNGT	1 cut(s)	438
Bst6I	CTCTTC	4 cut(s)	569, 570, 698, 724
BstBAI	YACGTR	1 cut(s)	74
BstDEI	CTNAG	3 cut(s)	387, 534, 612
BstENI	CCTNNNNNAGG	1 cut(s)	449
BstF5I	GGATG	1 cut(s)	38
BstKTI	GATC	6 cut(s)	54, 156, 322, 367, 429, 540
BstMAI	GTCTC	1 cut(s)	706
BstMBI	GATC	6 cut(s)	51, 153, 319, 364, 426, 537
BstMWI	GCNNNNNNNGC	3 cut(s)	219, 312, 587
BstNI	CCWGG	2 cut(s)	210, 372
BstPAI	GACNNNNGTC	1 cut(s)	473
BstSCI	CCNGG	2 cut(s)	208, 370
BstV1I	GCAGC	3 cut(s)	616, 712, 715
BstX2I	RGATCY	2 cut(s)	426, 537
BstYI	RGATCY	2 cut(s)	426, 537
BsuI	GTATCC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	115
Cfr13I	GGNCC	2 cut(s)	407, 468
CviAII	CATG	1 cut(s)	260
DdeI	CTNAG	3 cut(s)	387, 534, 612
DpnI	GATC	6 cut(s)	53, 155, 321, 366, 428, 539
DpnII	GATC	6 cut(s)	51, 153, 319, 364, 426, 537
Eam1104I	CTCTTC	4 cut(s)	569, 570, 698, 724
EarI	CTCTTC	4 cut(s)	569, 570, 698, 724
Eco24I	GRGCYC	1 cut(s)	317
Eco47I	GGWCC	2 cut(s)	407, 468
Eco57I	CTGAAG	2 cut(s)	235, 551
Eco88I	CYCGRG	2 cut(s)	47, 655
EcoNI	CCTNNNNNAGG	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	468
EcoRII	CCWGG	2 cut(s)	208, 370
EcoT38I	GRGCYC	1 cut(s)	317
FaeI	CATG	1 cut(s)	263
FaiI	YATR	2 cut(s)	261, 474
FatI	CATG	1 cut(s)	259
Fnu4HI	GCNGC	4 cut(s)	490, 630, 726, 729
FokI	GGATG	1 cut(s)	45
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	4 cut(s)	490, 630, 726, 729
FspBI	CTAG	1 cut(s)	582
GluI	GCNGC	4 cut(s)	490, 630, 726, 729
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	213
Hin1II	CATG	1 cut(s)	263
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	644
HinfI	GANTC	5 cut(s)	19, 93, 205, 562, 714
HphI	GGTGA	3 cut(s)	224, 287, 368
Hpy166II	GTNNAC	3 cut(s)	434, 478, 498
Hpy188I	TCNGA	4 cut(s)	254, 333, 570, 625
Hpy188III	TCNNGA	7 cut(s)	49, 101, 151, 448, 466, 541, 711
Hpy8I	GTNNAC	3 cut(s)	434, 478, 498
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	5 cut(s)	258, 346, 445, 502, 658
HpyCH4III	ACNGT	1 cut(s)	438
HpyCH4IV	ACGT	3 cut(s)	12, 73, 144
HpyCH4V	TGCA	1 cut(s)	306
HpyF10VI	GCNNNNNNNGC	3 cut(s)	219, 312, 587
HpyF3I	CTNAG	3 cut(s)	387, 534, 612
HpySE526I	ACGT	3 cut(s)	12, 73, 144
Hsp92II	CATG	1 cut(s)	263
Kzo9I	GATC	6 cut(s)	51, 153, 319, 364, 426, 537
Lsp1109I	GCAGC	3 cut(s)	616, 712, 715
LweI	GCATC	3 cut(s)	23, 106, 616
MaeI	CTAG	1 cut(s)	582
MaeII	ACGT	3 cut(s)	12, 73, 144
MaeIII	GTNAC	3 cut(s)	550, 674, 742
MalI	GATC	6 cut(s)	53, 155, 321, 366, 428, 539
MboI	GATC	6 cut(s)	51, 153, 319, 364, 426, 537
MflI	RGATCY	2 cut(s)	426, 537
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	3 cut(s)	585, 606, 619
MlyI	GAGTC	3 cut(s)	199, 556, 708
MmeI	TCCRAC	1 cut(s)	47
MseI	TTAA	2 cut(s)	441, 751
MspR9I	CCNGG	2 cut(s)	210, 372
MvaI	CCWGG	2 cut(s)	210, 372
MwoI	GCNNNNNNNGC	3 cut(s)	219, 312, 587
NdeII	GATC	6 cut(s)	51, 153, 319, 364, 426, 537
NlaIII	CATG	1 cut(s)	263
NmuCI	GTSAC	3 cut(s)	550, 674, 742
PaeR7I	CTCGAG	2 cut(s)	47, 655
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	19, 93
PflMI	CCANNNNNTGG	1 cut(s)	29
PkrI	GCNGC	4 cut(s)	491, 631, 727, 730
PleI	GAGTC	3 cut(s)	199, 556, 708
PpsI	GAGTC	3 cut(s)	199, 556, 708
Ppu21I	YACGTR	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	468
PshAI	GACNNNNGTC	1 cut(s)	473
Psp1406I	AACGTT	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	468
Psp6I	CCWGG	2 cut(s)	208, 370
PspGI	CCWGG	2 cut(s)	208, 370
PspPI	GGNCC	2 cut(s)	407, 468
PspPPI	RGGWCCY	1 cut(s)	468
PspXI	VCTCGAGB	1 cut(s)	655
PsuI	RGATCY	2 cut(s)	426, 537
SaqAI	TTAA	2 cut(s)	441, 751
SatI	GCNGC	4 cut(s)	490, 630, 726, 729
Sau3AI	GATC	6 cut(s)	51, 153, 319, 364, 426, 537
Sau96I	GGNCC	2 cut(s)	407, 468
SchI	GAGTC	3 cut(s)	199, 556, 708
ScrFI	CCNGG	2 cut(s)	210, 372
SduI	GDGCHC	1 cut(s)	317
SfaNI	GCATC	3 cut(s)	23, 106, 616
Sfr274I	CTCGAG	2 cut(s)	47, 655
SinI	GGWCC	2 cut(s)	407, 468
SlaI	CTCGAG	2 cut(s)	47, 655
SmlI	CTYRAG	4 cut(s)	47, 99, 446, 655
SmoI	CTYRAG	4 cut(s)	47, 99, 446, 655
Sse9I	AATT	3 cut(s)	585, 606, 619
SsiI	CCGC	2 cut(s)	487, 490
SspMI	CTAG	1 cut(s)	582
StyD4I	CCNGG	2 cut(s)	208, 370
TaaI	ACNGT	1 cut(s)	438
TaiI	ACGT	3 cut(s)	15, 76, 147
TaqI	TCGA	4 cut(s)	48, 54, 656, 710
TasI	AATT	3 cut(s)	585, 606, 619
TauI	GCSGC	1 cut(s)	492
TfiI	GAWTC	2 cut(s)	19, 93
Tru1I	TTAA	2 cut(s)	441, 751
Tru9I	TTAA	2 cut(s)	441, 751
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	3 cut(s)	550, 674, 742
TseI	GCWGC	3 cut(s)	629, 725, 728
Tsp45I	GTSAC	3 cut(s)	550, 674, 742
TspDTI	ATGAA	2 cut(s)	17, 203
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	1 cut(s)	115
Van91I	CCANNNNNTGG	1 cut(s)	29
VpaK11BI	GGWCC	2 cut(s)	407, 468
XagI	CCTNNNNNAGG	1 cut(s)	449
XhoI	CTCGAG	2 cut(s)	47, 655
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.