RchiOBHm_Chr7g0242901

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001589
Physical Location & Seq
Forward (+)
69221049 .. 69223246
2198 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21768

Sequence Viewer

Length: 750 bp
ATGAAGTTCAACATCGCCAACCCCACCACCGGTTGCCAGAAGAAGCTGGAAATCGATGACGACCACAAACTGCGTGCCTTTTTCGACAAGAGGATCTCCCAGGAAGTGAGCGGAGATGCCCTTGGAGAGGAATTTAAGGGATATGTGTTTAAGATTATGGGAGGCTGTGACAAGCAAGGGTTCCCGATGAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTCCACCGAGGAACCCCCTGCTTCCGTGGTCACGGAAGGAGGAACGGAGAGAGGAGGAGGAAGTCTGTCCGTGGGTGCATTGTCAGTCCTGATCTTTCTGTTCTGAACTTGGTTATTGTGAAGAAGGGTGACAATGATCTTCCTGGTTTGACTGACACTGAGAAGCCTAGGATGAGAGGTCCCAAGAGGGCATCTAAGATCCGAAAGCTCTTCAATCTCTCGAAGGAGGATGATGTTCGAAAGTATGTGAACACATACCGTAGATCATTCACATCAAAGACTGGTAAGAAGGTGAGCAAGGCTCCTAAGATTCAGAGGTTAGTCACTCCTTTGACCCTTCAAAGGAAGCGTGCAAGAATTGCAGACAAGAAGAAGAGGGTTGTGAAAGCCAAGTCTGAGGCTGCTGAGTACCAGAAACTCCTCGCCTCAAGATTGAAGGAACAAAGAGAACGACGCAGTGAGAGCTTGGCCAAGAAAAGGTCCAGGCTGTCTGCAGCTTCAAAGCCGTCTATTACTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

249

Amino Acids

28.31

Weight (kDa)

10.76

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6e PF01092 1 - 128 1.3e-53 Ribosomal protein S6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 111
AciI CCGC 1 cut(s) 111
AclWI GGATC 2 cut(s) 101, 421
AcoI YGGCCR 1 cut(s) 696
AcsI RAATTY 1 cut(s) 131
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 4 cut(s) 29, 127, 570, 705
AgeI ACCGGT 1 cut(s) 29
AgsI TTSAA 5 cut(s) 10, 442, 569, 664, 729
AhdI GACNNNNNGTC 1 cut(s) 210
AjnI CCWGG 4 cut(s) 99, 208, 370, 710
AluBI AGCT 4 cut(s) 46, 436, 693, 725
AluI AGCT 4 cut(s) 46, 436, 693, 725
AlwI GGATC 2 cut(s) 101, 421
AoxI GGCC 1 cut(s) 696
ApeKI GCWGC 2 cut(s) 629, 722
ApoI RAATTY 1 cut(s) 131
AsiGI ACCGGT 1 cut(s) 29
AspA2I CCTAGG 1 cut(s) 395
AspS9I GGNCC 2 cut(s) 407, 708
AsuHPI GGTGA 2 cut(s) 368, 532
AsuII TTCGAA 1 cut(s) 466
AvaII GGWCC 2 cut(s) 407, 708
AvrII CCTAGG 1 cut(s) 395
BalI TGGCCA 1 cut(s) 698
BbvI GCAGC 2 cut(s) 616, 734
BceAI ACGGC 1 cut(s) 718
BciT130I CCWGG 4 cut(s) 101, 210, 372, 712
BfaI CTAG 1 cut(s) 396
BfmI CTRYAG 1 cut(s) 720
BisI GCNGC 2 cut(s) 630, 723
BlnI CCTAGG 1 cut(s) 395
BlsI GCNGC 2 cut(s) 631, 724
Bme1390I CCNGG 4 cut(s) 101, 210, 372, 712
Bme18I GGWCC 2 cut(s) 407, 708
BmeRI GACNNNNNGTC 1 cut(s) 210
BmgT120I GGNCC 2 cut(s) 407, 708
BmiI GGNNCC 4 cut(s) 182, 241, 409, 531
BmrFI CCNGG 4 cut(s) 101, 210, 372, 712
BmsI GCATC 2 cut(s) 106, 428
BplI GAGNNNNNCTC 2 cut(s) 514, 546
Bpu14I TTCGAA 1 cut(s) 466
BpuEI CTTGAG 1 cut(s) 640
Bsa29I ATCGAT 1 cut(s) 54
BsaJI CCNNGG 7 cut(s) 99, 121, 208, 235, 253, 298, 395
BsaWI WCCGGW 1 cut(s) 29
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 127, 570, 705
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 514
BseBI CCWGG 4 cut(s) 101, 210, 372, 712
BseCI ATCGAT 1 cut(s) 54
BseDI CCNNGG 7 cut(s) 99, 121, 208, 235, 253, 298, 395
BseGI GGATG 2 cut(s) 405, 463
BseLI CCNNNNNNNGG 4 cut(s) 29, 127, 570, 705
BseMII CTCAG 3 cut(s) 378, 615, 624
BseNI ACTGG 1 cut(s) 514
BseRI GAGGAG 3 cut(s) 295, 298, 638
BseXI GCAGC 2 cut(s) 616, 734
BshFI GGCC 1 cut(s) 698
BshTI ACCGGT 1 cut(s) 29
BshVI ATCGAT 1 cut(s) 54
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 393
BslI CCNNNNNNNGG 4 cut(s) 29, 127, 570, 705
BsmFI GGGAC 1 cut(s) 393
BsnI GGCC 1 cut(s) 698
Bsp119I TTCGAA 1 cut(s) 466
Bsp143I GATC 5 cut(s) 93, 319, 364, 426, 491
BspACI CCGC 1 cut(s) 111
BspANI GGCC 1 cut(s) 698
BspCNI CTCAG 3 cut(s) 379, 616, 625
BspDI ATCGAT 1 cut(s) 54
BspLI GGNNCC 4 cut(s) 182, 241, 409, 531
BspMAI CTGCAG 1 cut(s) 724
BspPI GGATC 2 cut(s) 101, 421
BspQI GCTCTTC 1 cut(s) 443
BspT104I TTCGAA 1 cut(s) 466
BsrBI CCGCTC 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 29
BsrI ACTGG 1 cut(s) 514
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 7 cut(s) 99, 121, 208, 235, 253, 298, 395
BssMI GATC 5 cut(s) 93, 319, 364, 426, 491
BssT1I CCWWGG 2 cut(s) 121, 395
Bst2UI CCWGG 4 cut(s) 101, 210, 372, 712
Bst4CI ACNGT 1 cut(s) 488
Bst6I CTCTTC 2 cut(s) 443, 596
BstAPI GCANNNNNTGC 1 cut(s) 587
BstBI TTCGAA 1 cut(s) 466
BstC8I GCNNGC 2 cut(s) 75, 579
BstDEI CTNAG 6 cut(s) 387, 423, 534, 624, 633, 747
BstDSI CCRYGG 2 cut(s) 253, 298
BstENI CCTNNNNNAGG 1 cut(s) 125
BstF5I GGATG 2 cut(s) 405, 463
BstKTI GATC 5 cut(s) 96, 322, 367, 429, 494
BstMBI GATC 5 cut(s) 93, 319, 364, 426, 491
BstMWI GCNNNNNNNGC 2 cut(s) 587, 690
BstNI CCWGG 4 cut(s) 101, 210, 372, 712
BstSCI CCNGG 4 cut(s) 99, 208, 370, 710
BstSFI CTRYAG 1 cut(s) 720
BstV1I GCAGC 2 cut(s) 616, 734
BstX2I RGATCY 2 cut(s) 93, 426
BstYI RGATCY 2 cut(s) 93, 426
Bsu15I ATCGAT 1 cut(s) 54
BsuRI GGCC 1 cut(s) 698
BsuTUI ATCGAT 1 cut(s) 54
BtgI CCRYGG 2 cut(s) 253, 298
BtsCI GGATG 2 cut(s) 405, 463
BtsI GCAGTG 1 cut(s) 691
BtsIMutI CAGTG 2 cut(s) 384, 691
Cac8I GCNNGC 2 cut(s) 75, 579
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 407, 708
ClaI ATCGAT 1 cut(s) 54
CseI GACGC 1 cut(s) 690
Csp6I GTAC 1 cut(s) 637
CspAI ACCGGT 1 cut(s) 29
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 6 cut(s) 387, 423, 534, 624, 633, 747
DpnI GATC 5 cut(s) 95, 321, 366, 428, 493
DpnII GATC 5 cut(s) 93, 319, 364, 426, 491
DriI GACNNNNNGTC 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 696
Eam1104I CTCTTC 2 cut(s) 443, 596
Eam1105I GACNNNNNGTC 1 cut(s) 210
EarI CTCTTC 2 cut(s) 443, 596
Eco130I CCWWGG 2 cut(s) 121, 395
Eco47I GGWCC 2 cut(s) 407, 708
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 407
EcoRII CCWGG 4 cut(s) 99, 208, 370, 710
EcoT14I CCWWGG 2 cut(s) 121, 395
ErhI CCWWGG 2 cut(s) 121, 395
FaiI YATR 4 cut(s) 144, 158, 474, 484
FaqI GGGAC 1 cut(s) 393
Fnu4HI GCNGC 2 cut(s) 630, 723
FokI GGATG 2 cut(s) 412, 470
Fsp4HI GCNGC 2 cut(s) 630, 723
FspBI CTAG 1 cut(s) 396
GluI GCNGC 2 cut(s) 630, 723
HaeIII GGCC 1 cut(s) 698
HapII CCGG 1 cut(s) 30
HgaI GACGC 1 cut(s) 690
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HinfI GANTC 1 cut(s) 538
HpaII CCGG 1 cut(s) 30
HphI GGTGA 2 cut(s) 368, 532
Hpy166II GTNNAC 2 cut(s) 204, 478
Hpy188I TCNGA 4 cut(s) 333, 431, 543, 625
Hpy188III TCNNGA 4 cut(s) 184, 317, 448, 657
Hpy8I GTNNAC 2 cut(s) 204, 478
Hpy99I CGWCG 1 cut(s) 684
HpyAV CCTTC 6 cut(s) 258, 346, 445, 511, 575, 658
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4V TGCA 4 cut(s) 306, 581, 590, 722
HpyF10VI GCNNNNNNNGC 2 cut(s) 587, 690
HpyF3I CTNAG 6 cut(s) 387, 423, 534, 624, 633, 747
Kzo9I GATC 5 cut(s) 93, 319, 364, 426, 491
LguI GCTCTTC 1 cut(s) 443
LmnI GCTCC 2 cut(s) 234, 535
Lsp1109I GCAGC 2 cut(s) 616, 734
LweI GCATC 2 cut(s) 106, 428
MaeI CTAG 1 cut(s) 396
MaeIII GTNAC 4 cut(s) 167, 257, 356, 550
MalI GATC 5 cut(s) 95, 321, 366, 428, 493
MbiI CCGCTC 1 cut(s) 111
MboI GATC 5 cut(s) 93, 319, 364, 426, 491
MboII GAAGA 6 cut(s) 52, 359, 361, 430, 610, 613
MflI RGATCY 2 cut(s) 93, 426
MlsI TGGCCA 1 cut(s) 698
MluCI AATT 2 cut(s) 131, 585
MluNI TGGCCA 1 cut(s) 698
Mox20I TGGCCA 1 cut(s) 698
MscI TGGCCA 1 cut(s) 698
MseI TTAA 2 cut(s) 135, 150
Msp20I TGGCCA 1 cut(s) 698
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 4 cut(s) 101, 210, 372, 712
MvaI CCWGG 4 cut(s) 101, 210, 372, 712
MwoI GCNNNNNNNGC 2 cut(s) 587, 690
NdeII GATC 5 cut(s) 93, 319, 364, 426, 491
NlaIV GGNNCC 4 cut(s) 182, 241, 409, 531
NmuCI GTSAC 4 cut(s) 167, 257, 356, 550
NspV TTCGAA 1 cut(s) 466
PciSI GCTCTTC 1 cut(s) 443
PfeI GAWTC 1 cut(s) 538
PinAI ACCGGT 1 cut(s) 29
PkrI GCNGC 2 cut(s) 631, 724
PpuMI RGGWCCY 1 cut(s) 407
Psp5II RGGWCCY 1 cut(s) 407
Psp6I CCWGG 4 cut(s) 99, 208, 370, 710
PspGI CCWGG 4 cut(s) 99, 208, 370, 710
PspN4I GGNNCC 4 cut(s) 182, 241, 409, 531
PspPI GGNCC 2 cut(s) 407, 708
PspPPI RGGWCCY 1 cut(s) 407
PstI CTGCAG 1 cut(s) 724
PsuI RGATCY 2 cut(s) 93, 426
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
SapI GCTCTTC 1 cut(s) 443
SaqAI TTAA 2 cut(s) 135, 150
SatI GCNGC 2 cut(s) 630, 723
Sau3AI GATC 5 cut(s) 93, 319, 364, 426, 491
Sau96I GGNCC 2 cut(s) 407, 708
ScrFI CCNGG 4 cut(s) 101, 210, 372, 712
SetI ASST 8 cut(s) 48, 409, 438, 522, 548, 695, 710, 727
SfaNI GCATC 2 cut(s) 106, 428
SfcI CTRYAG 1 cut(s) 720
SfuI TTCGAA 1 cut(s) 466
SinI GGWCC 2 cut(s) 407, 708
SmlI CTYRAG 1 cut(s) 655
SmoI CTYRAG 1 cut(s) 655
Sse9I AATT 2 cut(s) 131, 585
SsiI CCGC 1 cut(s) 111
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 4 cut(s) 99, 208, 370, 710
StyI CCWWGG 2 cut(s) 121, 395
TaaI ACNGT 1 cut(s) 488
TaqI TCGA 4 cut(s) 54, 84, 449, 466
TasI AATT 2 cut(s) 131, 585
TfiI GAWTC 1 cut(s) 538
Tru1I TTAA 2 cut(s) 135, 150
Tru9I TTAA 2 cut(s) 135, 150
TscAI CASTG 2 cut(s) 391, 691
TseFI GTSAC 4 cut(s) 167, 257, 356, 550
TseI GCWGC 2 cut(s) 629, 722
Tsp45I GTSAC 4 cut(s) 167, 257, 356, 550
TspDTI ATGAA 2 cut(s) 17, 203
TspGWI ACGGA 4 cut(s) 242, 276, 287, 288
TspRI CASTG 2 cut(s) 391, 691
VpaK11BI GGWCC 2 cut(s) 407, 708
XagI CCTNNNNNAGG 1 cut(s) 125
XapI RAATTY 1 cut(s) 131
XmaJI CCTAGG 1 cut(s) 395
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.