FvH4_5g36790

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001589
Physical Location & Seq
Forward (+)
26965604 .. 26967756
2153 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g36790.t1

Sequence Viewer

Length: 750 bp
ATGAAGTTCAACATCGCCAACCCCACCACTGGTTGCCAGAAGAAGCTGGAAATCGATGACGACCACAAACTGCGTGCCTTTTTTGACAAGAGGATCTCCCAGGAAGTGAGCGGAGATGCCCTCGGAGAGGAATTTAAGGGATACGTCTTTAAGATTATGGGAGGGTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTGACTCCTGGTCGCGTTCGCCTCTTGCTGCACCGAGGAACCCCTTGCTTCCGTGGTCATGGAAGGAGGAACGGAGAGAGGAGAAGGAAGTCTGTCCGTGGGTGCATTGTCAGCCCGGATCTTTCAGTTCTGAACTTGGTTATTGTGAAGAAGGGTGACAATGATCTTCCTGGTTTGACCGACACTGAGAAGCCTAGGATGAGAGGTCCAAAGAGGGCATCTAAGATCCGAAAGCTCTTCAATCTCTCAAAGGAGGATGATGTCCGAAAGTATGTGAACACATACCGTAGGTCATTCACATCGAAGACCGGCAAGAAGGTGAGCAAGGCTCCTAAGATTCAGAGGTTGGTCACTCCTTTGACCCTTCAAAGGAAGCGTGCAAGAATTGCAGACAAGAAGAAGAGGGTTGTGAAAGCCAAGTCTGAGGCTGCCGAGTACCAGAAACTCCTTGCCTCAAGATTGAAGGAACAAAGAGAACGAAGGAGTGAGAGCTTGGCCAAGAAAAGGTCTAGGCTGTCTGCAGCCACAAAGCCCTCAGTCACTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

250

Amino Acids

28.31

Weight (kDa)

10.76

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6e PF01092 1 - 128 1.3e-53 Ribosomal protein S6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 111
AccII CGCG 1 cut(s) 216
AciI CCGC 1 cut(s) 111
AclWI GGATC 3 cut(s) 101, 327, 421
AcoI YGGCCR 1 cut(s) 696
AcsI RAATTY 1 cut(s) 131
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 4 cut(s) 29, 127, 570, 705
AgsI TTSAA 4 cut(s) 10, 442, 569, 664
AhdI GACNNNNNGTC 1 cut(s) 210
AjnI CCWGG 3 cut(s) 99, 208, 370
AluBI AGCT 3 cut(s) 46, 436, 693
AluI AGCT 3 cut(s) 46, 436, 693
AlwI GGATC 3 cut(s) 101, 327, 421
AlwNI CAGNNNCTG 1 cut(s) 743
AoxI GGCC 1 cut(s) 696
ApeKI GCWGC 3 cut(s) 229, 629, 722
ApoI RAATTY 1 cut(s) 131
AspA2I CCTAGG 1 cut(s) 395
AspS9I GGNCC 1 cut(s) 407
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 2 cut(s) 368, 532
AvaII GGWCC 1 cut(s) 407
AvrII CCTAGG 1 cut(s) 395
BalI TGGCCA 1 cut(s) 698
BbsI GAAGAC 1 cut(s) 512
BbvI GCAGC 3 cut(s) 216, 616, 734
BciT130I CCWGG 3 cut(s) 101, 210, 372
BciVI GTATCC 1 cut(s) 134
BcnI CCSGG 1 cut(s) 317
BfaI CTAG 2 cut(s) 396, 711
BfmI CTRYAG 1 cut(s) 720
BfuI GTATCC 1 cut(s) 134
BisI GCNGC 3 cut(s) 230, 630, 723
BlnI CCTAGG 1 cut(s) 395
BlsI GCNGC 3 cut(s) 231, 631, 724
Bme1390I CCNGG 4 cut(s) 101, 210, 317, 372
Bme18I GGWCC 1 cut(s) 407
BmeRI GACNNNNNGTC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 407
BmiI GGNNCC 3 cut(s) 182, 241, 531
BmrFI CCNGG 4 cut(s) 101, 210, 317, 372
BmsI GCATC 2 cut(s) 106, 428
BpiI GAAGAC 1 cut(s) 512
BplI GAGNNNNNCTC 4 cut(s) 105, 137, 514, 546
BpuEI CTTGAG 1 cut(s) 640
BpuMI CCSGG 1 cut(s) 317
Bsa29I ATCGAT 1 cut(s) 54
BsaJI CCNNGG 6 cut(s) 99, 121, 235, 253, 298, 395
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 127, 570, 705
Bse118I RCCGGY 1 cut(s) 509
Bse1I ACTGG 1 cut(s) 34
BseBI CCWGG 3 cut(s) 101, 210, 372
BseCI ATCGAT 1 cut(s) 54
BseDI CCNNGG 6 cut(s) 99, 121, 235, 253, 298, 395
BseGI GGATG 2 cut(s) 405, 463
BseLI CCNNNNNNNGG 4 cut(s) 29, 127, 570, 705
BseMII CTCAG 3 cut(s) 378, 615, 750
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 295
BseXI GCAGC 3 cut(s) 216, 616, 734
BsgI GTGCAG 1 cut(s) 215
Bsh1236I CGCG 1 cut(s) 216
BshFI GGCC 1 cut(s) 698
BshVI ATCGAT 1 cut(s) 54
BsiSI CCGG 2 cut(s) 317, 510
BslI CCNNNNNNNGG 4 cut(s) 29, 127, 570, 705
BsnI GGCC 1 cut(s) 698
Bsp143I GATC 4 cut(s) 93, 319, 364, 426
BspACI CCGC 1 cut(s) 111
BspANI GGCC 1 cut(s) 698
BspCNI CTCAG 3 cut(s) 379, 616, 749
BspDI ATCGAT 1 cut(s) 54
BspFNI CGCG 1 cut(s) 216
BspLI GGNNCC 3 cut(s) 182, 241, 531
BspMAI CTGCAG 1 cut(s) 724
BspPI GGATC 3 cut(s) 101, 327, 421
BspQI GCTCTTC 1 cut(s) 443
BsrBI CCGCTC 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 509
BsrI ACTGG 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 509
BssECI CCNNGG 6 cut(s) 99, 121, 235, 253, 298, 395
BssMI GATC 4 cut(s) 93, 319, 364, 426
BssT1I CCWWGG 1 cut(s) 395
Bst2UI CCWGG 3 cut(s) 101, 210, 372
Bst4CI ACNGT 1 cut(s) 488
Bst6I CTCTTC 2 cut(s) 443, 596
BstAPI GCANNNNNTGC 1 cut(s) 587
BstC8I GCNNGC 2 cut(s) 75, 579
BstDEI CTNAG 6 cut(s) 387, 423, 534, 624, 736, 747
BstDSI CCRYGG 2 cut(s) 253, 298
BstENI CCTNNNNNAGG 1 cut(s) 125
BstF5I GGATG 2 cut(s) 405, 463
BstFNI CGCG 1 cut(s) 216
BstKTI GATC 4 cut(s) 96, 322, 367, 429
BstMBI GATC 4 cut(s) 93, 319, 364, 426
BstMWI GCNNNNNNNGC 2 cut(s) 312, 587
BstNI CCWGG 3 cut(s) 101, 210, 372
BstSCI CCNGG 4 cut(s) 99, 208, 315, 370
BstSFI CTRYAG 1 cut(s) 720
BstUI CGCG 1 cut(s) 216
BstV1I GCAGC 3 cut(s) 216, 616, 734
BstV2I GAAGAC 1 cut(s) 512
BstX2I RGATCY 3 cut(s) 93, 319, 426
BstYI RGATCY 3 cut(s) 93, 319, 426
Bsu15I ATCGAT 1 cut(s) 54
BsuI GTATCC 1 cut(s) 134
BsuRI GGCC 1 cut(s) 698
BsuTUI ATCGAT 1 cut(s) 54
BtgI CCRYGG 2 cut(s) 253, 298
BtsCI GGATG 2 cut(s) 405, 463
BtsI GCAGTG 1 cut(s) 741
BtsIMutI CAGTG 3 cut(s) 27, 384, 741
Cac8I GCNNGC 2 cut(s) 75, 579
CaiI CAGNNNCTG 1 cut(s) 743
Cfr10I RCCGGY 1 cut(s) 509
Cfr13I GGNCC 1 cut(s) 407
ClaI ATCGAT 1 cut(s) 54
Csp6I GTAC 1 cut(s) 637
CviAII CATG 1 cut(s) 260
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 6 cut(s) 387, 423, 534, 624, 736, 747
DpnI GATC 4 cut(s) 95, 321, 366, 428
DpnII GATC 4 cut(s) 93, 319, 364, 426
DriI GACNNNNNGTC 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 696
Eam1104I CTCTTC 2 cut(s) 443, 596
Eam1105I GACNNNNNGTC 1 cut(s) 210
EarI CTCTTC 2 cut(s) 443, 596
Eco130I CCWWGG 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 407
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoRII CCWGG 3 cut(s) 99, 208, 370
EcoT14I CCWWGG 1 cut(s) 395
ErhI CCWWGG 1 cut(s) 395
FaeI CATG 1 cut(s) 263
FaiI YATR 4 cut(s) 158, 261, 474, 484
FatI CATG 1 cut(s) 259
Fnu4HI GCNGC 3 cut(s) 230, 630, 723
FokI GGATG 2 cut(s) 412, 470
Fsp4HI GCNGC 3 cut(s) 230, 630, 723
FspBI CTAG 2 cut(s) 396, 711
GluI GCNGC 3 cut(s) 230, 630, 723
HaeIII GGCC 1 cut(s) 698
HapII CCGG 2 cut(s) 317, 510
Hin1II CATG 1 cut(s) 263
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HinfI GANTC 2 cut(s) 205, 538
HpaII CCGG 2 cut(s) 317, 510
HphI GGTGA 2 cut(s) 368, 532
Hpy166II GTNNAC 2 cut(s) 204, 478
Hpy188I TCNGA 6 cut(s) 125, 333, 431, 467, 543, 625
Hpy188III TCNNGA 1 cut(s) 657
Hpy8I GTNNAC 2 cut(s) 204, 478
HpyAV CCTTC 7 cut(s) 258, 279, 346, 511, 575, 658, 675
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 5 cut(s) 232, 306, 581, 590, 722
HpyF10VI GCNNNNNNNGC 2 cut(s) 312, 587
HpyF3I CTNAG 6 cut(s) 387, 423, 534, 624, 736, 747
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 1 cut(s) 263
Kzo9I GATC 4 cut(s) 93, 319, 364, 426
LguI GCTCTTC 1 cut(s) 443
LmnI GCTCC 1 cut(s) 535
Lsp1109I GCAGC 3 cut(s) 216, 616, 734
LweI GCATC 2 cut(s) 106, 428
MaeI CTAG 2 cut(s) 396, 711
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 4 cut(s) 167, 356, 550, 739
MalI GATC 4 cut(s) 95, 321, 366, 428
MbiI CCGCTC 1 cut(s) 111
MboI GATC 4 cut(s) 93, 319, 364, 426
MboII GAAGA 7 cut(s) 52, 359, 361, 430, 517, 610, 613
MflI RGATCY 3 cut(s) 93, 319, 426
MlsI TGGCCA 1 cut(s) 698
MluCI AATT 2 cut(s) 131, 585
MluNI TGGCCA 1 cut(s) 698
MlyI GAGTC 1 cut(s) 199
Mox20I TGGCCA 1 cut(s) 698
MscI TGGCCA 1 cut(s) 698
MseI TTAA 2 cut(s) 135, 150
Msp20I TGGCCA 1 cut(s) 698
MspI CCGG 2 cut(s) 317, 510
MspR9I CCNGG 4 cut(s) 101, 210, 317, 372
MvaI CCWGG 3 cut(s) 101, 210, 372
MvnI CGCG 1 cut(s) 216
MwoI GCNNNNNNNGC 2 cut(s) 312, 587
NciI CCSGG 1 cut(s) 317
NdeII GATC 4 cut(s) 93, 319, 364, 426
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 3 cut(s) 182, 241, 531
NmeAIII GCCGAG 1 cut(s) 658
NmuCI GTSAC 4 cut(s) 167, 356, 550, 739
PciSI GCTCTTC 1 cut(s) 443
PfeI GAWTC 1 cut(s) 538
PkrI GCNGC 3 cut(s) 231, 631, 724
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
Psp6I CCWGG 3 cut(s) 99, 208, 370
PspGI CCWGG 3 cut(s) 99, 208, 370
PspN4I GGNNCC 3 cut(s) 182, 241, 531
PspPI GGNCC 1 cut(s) 407
PstI CTGCAG 1 cut(s) 724
PstNI CAGNNNCTG 1 cut(s) 743
PsuI RGATCY 3 cut(s) 93, 319, 426
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
SapI GCTCTTC 1 cut(s) 443
SaqAI TTAA 2 cut(s) 135, 150
SatI GCNGC 3 cut(s) 230, 630, 723
Sau3AI GATC 4 cut(s) 93, 319, 364, 426
Sau96I GGNCC 1 cut(s) 407
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 4 cut(s) 101, 210, 317, 372
SetI ASST 9 cut(s) 48, 147, 409, 438, 494, 522, 548, 695, 710
SfaNI GCATC 2 cut(s) 106, 428
SfcI CTRYAG 1 cut(s) 720
SinI GGWCC 1 cut(s) 407
SmlI CTYRAG 1 cut(s) 655
SmoI CTYRAG 1 cut(s) 655
Sse9I AATT 2 cut(s) 131, 585
SsiI CCGC 1 cut(s) 111
SspMI CTAG 2 cut(s) 396, 711
StyD4I CCNGG 4 cut(s) 99, 208, 315, 370
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 1 cut(s) 488
TaiI ACGT 1 cut(s) 147
TaqI TCGA 2 cut(s) 54, 503
TaqII GACCGA 1 cut(s) 395
TasI AATT 2 cut(s) 131, 585
TfiI GAWTC 1 cut(s) 538
Tru1I TTAA 2 cut(s) 135, 150
Tru9I TTAA 2 cut(s) 135, 150
TscAI CASTG 3 cut(s) 34, 391, 748
TseFI GTSAC 4 cut(s) 167, 356, 550, 739
TseI GCWGC 3 cut(s) 229, 629, 722
Tsp45I GTSAC 4 cut(s) 167, 356, 550, 739
TspDTI ATGAA 2 cut(s) 17, 203
TspGWI ACGGA 3 cut(s) 242, 287, 288
TspRI CASTG 3 cut(s) 34, 391, 748
VpaK11BI GGWCC 1 cut(s) 407
XagI CCTNNNNNAGG 1 cut(s) 125
XapI RAATTY 1 cut(s) 131
XmaJI CCTAGG 1 cut(s) 395
XspI CTAG 2 cut(s) 396, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.