Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001758.1

Orthogroup ID

OG0001589

Physical Location & Seq

Genomic Coordinates Forward (+)

163318 .. 164636

Gene Structure 1319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001758.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atggaatttattttcttggtcactagcaggtatgatactgctgcaacactggagctttctcaagcagaacataaggagcggaaagcaagggccttagctgcagctgccatggagttggaaagacttctcagaaaggaagattttggactcaggagttatgtgttcaaaattatgggaggctgtgacaagaaattgtttccttcgaagcaaggagtgttaaccccagggtgtgtttgccgtttgctccacaggggtgactgtgaccttcctggactgactgatgttgaaaagccaacagtgagaggtccaaagagggcttccaagatccgcaagctatttaacctcaccaaggatgatgatgttaggaagtatgtcaacacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Ribosomal_S6e

Protein Analysis

127

Amino Acids

14.4

Weight (kDa)

9.51

Isoelectric Point (pI)

26.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31700 AT4G31700 AT5G10360 AT5G10360
fragaria_vesca	FvH4_1g20340 FvH4_5g36790 FvH4_5g36790
malus_domestica	MD08G1186900.v1.1 MD15G1372800.v1.1
prunus_persica	Prupe.1G521400_v2.0.a1 Prupe.1G521400_v2.0.a1 Prupe.6G192100_v2.0.a1
pyrus_communis	pycom08g16070 pycom15g33380
rosa_chinensis	RchiOBHm_Chr1g0378681 RchiOBHm_Chr2g0112471 RchiOBHm_Chr5g0001121 RchiOBHm_Chr5g0001131 RchiOBHm_Chr7g0242901
rosa_laevigata	RLG00000000869 RLG00000017983 RLG00000024778
rosa_multiflora	Rmu_sc0000556.1_g000006 Rmu_sc0001706.1_g000036 Rmu_sc0001758.1_g000027 Rmu_sc0004165.1_g000057
rosa_roxburghii	Rroxscaffold_2G00131400 Rroxscaffold_3G00222260 Rroxscaffold_4G00307670 Rroxscaffold_6G00413940
rosa_rugosa	Rorug02G0106700 Rorug02G0181100 Rorug07G0291700 Rorug07G0317600 Rorug07G0317700
rosa_samantha	Rh2DG241800 Rh5BG035200 Rh5CG009600 Rh6AG374700 Rh7AG084600 Rh7AG473400 Rh7BG443300 Rh7CG085600 Rh7CG490300 Rh7DG086700 Rh7DG458600
rosa_wichuraiana	Rw2G018140 Rw6G032660 Rw7G039080 Rw7G039370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccBSI	CCGCTC	1 cut(s)	79
AciI	CCGC	2 cut(s)	79, 328
AclWI	GGATC	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgsI	TTSAA	2 cut(s)	166, 287
AjnI	CCWGG	2 cut(s)	223, 268
AjuI	GAANNNNNNNTTGG	2 cut(s)	301, 333
AleI	CACNNNNGTG	1 cut(s)	252
AluBI	AGCT	4 cut(s)	55, 98, 104, 334
AluI	AGCT	4 cut(s)	55, 98, 104, 334
AlwI	GGATC	1 cut(s)	319
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	4 cut(s)	41, 98, 101, 104
ApoI	RAATTY	1 cut(s)	5
Asp700I	GAANNNNTTC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	90, 305
AsuHPI	GGTGA	2 cut(s)	266, 337
AsuII	TTCGAA	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	305
BbvI	GCAGC	4 cut(s)	28, 85, 91, 113
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	2 cut(s)	225, 270
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	18
BisI	GCNGC	4 cut(s)	42, 99, 102, 105
BlsI	GCNGC	4 cut(s)	43, 100, 103, 106
Bme1390I	CCNGG	2 cut(s)	225, 270
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	90, 305
BmrFI	CCNGG	2 cut(s)	225, 270
BpmI	CTGGAG	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	94
Bpu14I	TTCGAA	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	45
BsaJI	CCNNGG	4 cut(s)	108, 223, 224, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	54
BseBI	CCWGG	2 cut(s)	225, 270
BseDI	CCNNGG	4 cut(s)	108, 223, 224, 348
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMII	CTCAG	2 cut(s)	142, 163
BseNI	ACTGG	1 cut(s)	54
BseXI	GCAGC	4 cut(s)	28, 85, 91, 113
BshFI	GGCC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	349
BsnI	GGCC	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	324
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	2 cut(s)	79, 328
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	2 cut(s)	141, 162
BspMAI	CTGCAG	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	319
BspT104I	TTCGAA	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	54
BssECI	CCNNGG	4 cut(s)	108, 223, 224, 348
BssMI	GATC	1 cut(s)	324
BssT1I	CCWWGG	2 cut(s)	108, 348
Bst2UI	CCWGG	2 cut(s)	225, 270
Bst4CI	ACNGT	2 cut(s)	260, 298
BstBI	TTCGAA	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	3 cut(s)	94, 128, 149
BstDSI	CCRYGG	1 cut(s)	108
BstENI	CCTNNNNNAGG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	324
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 104
BstNI	CCWGG	2 cut(s)	225, 270
BstSCI	CCNGG	2 cut(s)	223, 268
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	4 cut(s)	28, 85, 91, 113
BstX2I	RGATCY	1 cut(s)	324
BstXI	CCANNNNNNTGG	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	92
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	358
BtsIMutI	CAGTG	2 cut(s)	47, 303
BveI	ACCTGC	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	332
Cfr13I	GGNCC	2 cut(s)	90, 305
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	8 cut(s)	55, 92, 98, 104, 180, 292, 317, 334
CviKI_1	RGCY	8 cut(s)	55, 92, 98, 104, 180, 292, 317, 334
DdeI	CTNAG	3 cut(s)	94, 128, 149
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
Eco130I	CCWWGG	2 cut(s)	108, 348
Eco47I	GGWCC	1 cut(s)	305
EcoNI	CCTNNNNNAGG	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	90
EcoRII	CCWGG	2 cut(s)	223, 268
EcoT14I	CCWWGG	2 cut(s)	108, 348
ErhI	CCWWGG	2 cut(s)	108, 348
FaeI	CATG	1 cut(s)	112
FaiI	YATR	6 cut(s)	33, 72, 110, 159, 173, 372
FatI	CATG	1 cut(s)	108
Fnu4HI	GCNGC	4 cut(s)	42, 99, 102, 105
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	4 cut(s)	42, 99, 102, 105
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	4 cut(s)	42, 99, 102, 105
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	112
HincII	GTYRAC	2 cut(s)	219, 376
HindII	GTYRAC	2 cut(s)	219, 376
HinfI	GANTC	1 cut(s)	147
HpaI	GTTAAC	1 cut(s)	219
HphI	GGTGA	2 cut(s)	266, 337
Hpy166II	GTNNAC	2 cut(s)	219, 376
Hpy188I	TCNGA	1 cut(s)	131
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	2 cut(s)	219, 376
HpyAV	CCTTC	2 cut(s)	210, 275
HpyCH4III	ACNGT	2 cut(s)	260, 298
HpyCH4V	TGCA	2 cut(s)	44, 101
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 104
HpyF3I	CTNAG	3 cut(s)	94, 128, 149
Hsp92II	CATG	1 cut(s)	112
KspAI	GTTAAC	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	324
LmnI	GCTCC	3 cut(s)	52, 76, 249
LpnPI	CCDG	8 cut(s)	13, 35, 136, 210, 235, 237, 255, 282
Lsp1109I	GCAGC	4 cut(s)	28, 85, 91, 113
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	4 cut(s)	19, 182, 254, 260
MalI	GATC	1 cut(s)	326
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	1 cut(s)	324
MboII	GAAGA	1 cut(s)	149
MflI	RGATCY	1 cut(s)	324
MluCI	AATT	3 cut(s)	5, 168, 191
MlyI	GAGTC	1 cut(s)	141
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	4 cut(s)	170, 296, 306, 353
MroXI	GAANNNNTTC	1 cut(s)	123
MseI	TTAA	3 cut(s)	218, 339, 382
MslI	CAYNNNNRTG	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	104
MspR9I	CCNGG	2 cut(s)	225, 270
MvaI	CCWGG	2 cut(s)	225, 270
MwoI	GCNNNNNNNGC	2 cut(s)	98, 104
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	1 cut(s)	324
NlaIII	CATG	1 cut(s)	112
NmuCI	GTSAC	4 cut(s)	19, 182, 254, 260
NspV	TTCGAA	1 cut(s)	203
OliI	CACNNNNGTG	1 cut(s)	252
PasI	CCCWGGG	1 cut(s)	224
PdmI	GAANNNNTTC	1 cut(s)	123
PfoI	TCCNGGA	1 cut(s)	268
PkrI	GCNGC	4 cut(s)	43, 100, 103, 106
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	223, 268
PspGI	CCWGG	2 cut(s)	223, 268
PspPI	GGNCC	2 cut(s)	90, 305
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	324
PvuII	CAGCTG	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	3 cut(s)	218, 339, 382
SatI	GCNGC	4 cut(s)	42, 99, 102, 105
Sau3AI	GATC	1 cut(s)	324
Sau96I	GGNCC	2 cut(s)	90, 305
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	2 cut(s)	225, 270
SetI	ASST	8 cut(s)	32, 57, 100, 106, 267, 307, 336, 345
SfcI	CTRYAG	1 cut(s)	99
SfuI	TTCGAA	1 cut(s)	203
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
Sse9I	AATT	3 cut(s)	5, 168, 191
SsiI	CCGC	2 cut(s)	79, 328
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	2 cut(s)	223, 268
StyI	CCWWGG	2 cut(s)	108, 348
TaaI	ACNGT	2 cut(s)	260, 298
TaqI	TCGA	1 cut(s)	203
TasI	AATT	3 cut(s)	5, 168, 191
Tru1I	TTAA	3 cut(s)	218, 339, 382
Tru9I	TTAA	3 cut(s)	218, 339, 382
TscAI	CASTG	2 cut(s)	54, 303
TseFI	GTSAC	4 cut(s)	19, 182, 254, 260
TseI	GCWGC	4 cut(s)	41, 98, 101, 104
Tsp45I	GTSAC	4 cut(s)	19, 182, 254, 260
TspRI	CASTG	2 cut(s)	54, 303
VpaK11BI	GGWCC	1 cut(s)	305
XagI	CCTNNNNNAGG	1 cut(s)	347
XapI	RAATTY	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.