Prupe.6G192100_v2.0.a1

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001589
Physical Location & Seq
Reverse (-)
19939698 .. 19942436
2739 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G192100.1

Sequence Viewer

Length: 747 bp
ATGAAGTTTAACATTGCGAATCCCACCACTGGGTGCCAGAAGAAGCTCGAGATCGACGATGACGCTAAGCTTCGTGCATTCTGGGACAAGAGGATCTCTCAAGAAGTCAATGGTGATGCCCTAGGCGAGGAGTTCAAGGGCTATGTATTTAAAATTATGGGAGGCTGTGACAAGCAAGGCTTTCCTATGAAGCAAGGAGTGTTAACCCCAGGCCGTGTTCGCCTTTTGCTCCATAGAGGTACCCCGTGCTTCCGTGGATATGGAAGGAGGAATGGAGAACGAAGAAGGAAGTCTGTTCGTGGATGTATTGTCAGTCCAGACCTCTCTGTATTGAACTTGGTTATTGTTAAGAAAGGTGACAATGACCTTCCTGGACTGACAGATGTTGAAAAGCCAAGAATGAGAGGTCCAAAAAGGGCATCAAAGATCCGGAAACTATTTAACCTCACCAAGGATGATGATGTGAGGAAGTATGTCAACACCTACCGCAGAACATTCACAAGCAAAACTGGCAAAAAGTGCAGCAAAGCTCCCAAAATTCAGAGACTGGTTACTCCATTGACTTTACAGAGGAAGCGAGCAAGGATTGCAGAGAAGAAGAAGAGAGTTGCAAAGGCGAAGTCTGAGGCAGCAGAGTATCAGAAGCTCCTTGCTTCCCGGTTGAAGGAGCAGCGTGATCGACGCAGTGAGAGCTTAGCCAAGAGGAGATCGAGACTTTCTGGTGCATCTAAGCCATCTGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

249

Amino Acids

28.19

Weight (kDa)

10.7

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 239
AccB1I GGYRCC 2 cut(s) 33, 239
AccIII TCCGGA 1 cut(s) 429
AciI CCGC 1 cut(s) 487
AclWI GGATC 2 cut(s) 101, 421
AcsI RAATTY 1 cut(s) 537
AdeI CACNNNGTG 1 cut(s) 33
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 5 cut(s) 29, 30, 127, 451, 664
AgsI TTSAA 4 cut(s) 136, 334, 389, 664
AjnI CCWGG 2 cut(s) 208, 370
AluBI AGCT 5 cut(s) 46, 70, 530, 646, 693
AluI AGCT 5 cut(s) 46, 70, 530, 646, 693
Alw26I GTCTC 2 cut(s) 538, 706
AlwI GGATC 2 cut(s) 101, 421
AlwNI CAGNNNCTG 1 cut(s) 547
Ama87I CYCGRG 1 cut(s) 47
Aor13HI TCCGGA 1 cut(s) 429
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 4 cut(s) 522, 629, 670, 740
ApoI RAATTY 1 cut(s) 537
ArsI GACNNNNNNTTYG 2 cut(s) 605, 637
Asp718I GGTACC 1 cut(s) 239
AspA2I CCTAGG 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 407
AsuC2I CCSGG 1 cut(s) 658
AsuHPI GGTGA 3 cut(s) 125, 368, 439
AvaI CYCGRG 1 cut(s) 47
AvaII GGWCC 1 cut(s) 407
AvrII CCTAGG 1 cut(s) 121
BanI GGYRCC 2 cut(s) 33, 239
BbvI GCAGC 4 cut(s) 534, 641, 682, 727
BccI CCATC 1 cut(s) 742
BceAI ACGGC 1 cut(s) 198
BcgI CGANNNNNNTGC 2 cut(s) 659, 693
BciT130I CCWGG 2 cut(s) 210, 372
BcnI CCSGG 1 cut(s) 658
BcoDI GTCTC 2 cut(s) 538, 706
BfaI CTAG 1 cut(s) 122
BisI GCNGC 4 cut(s) 523, 630, 671, 741
BlnI CCTAGG 1 cut(s) 121
BlpI GCTNAGC 2 cut(s) 66, 694
BlsI GCNGC 4 cut(s) 524, 631, 672, 742
Bme1390I CCNGG 3 cut(s) 210, 372, 658
Bme18I GGWCC 1 cut(s) 407
BmeT110I CYCGRG 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 407
BmiI GGNNCC 2 cut(s) 35, 241
BmrFI CCNGG 3 cut(s) 210, 372, 658
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 3 cut(s) 106, 428, 734
BmuI ACTGGG 1 cut(s) 39
BplI GAGNNNNNCTC 2 cut(s) 82, 114
Bpu1102I GCTNAGC 2 cut(s) 66, 694
BpuEI CTTGAG 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 658
BsaJI CCNNGG 4 cut(s) 121, 208, 253, 450
BsaWI WCCGGW 1 cut(s) 429
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 30, 127, 451, 664
Bse1I ACTGG 3 cut(s) 34, 514, 552
Bse3DI GCAATG 1 cut(s) 12
BseAI TCCGGA 1 cut(s) 429
BseBI CCWGG 2 cut(s) 210, 372
BseDI CCNNGG 4 cut(s) 121, 208, 253, 450
BseGI GGATG 2 cut(s) 308, 460
BseLI CCNNNNNNNGG 5 cut(s) 29, 30, 127, 451, 664
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 615
BseNI ACTGG 3 cut(s) 34, 514, 552
BseRI GAGGAG 2 cut(s) 143, 718
BseXI GCAGC 4 cut(s) 534, 641, 682, 727
BsgI GTGCAG 1 cut(s) 541
BshFI GGCC 1 cut(s) 213
BshNI GGYRCC 2 cut(s) 33, 239
BsiHKCI CYCGRG 1 cut(s) 47
BsiSI CCGG 2 cut(s) 430, 658
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 5 cut(s) 29, 30, 127, 451, 664
BsmAI GTCTC 2 cut(s) 538, 706
BsmFI GGGAC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 77
BsnI GGCC 1 cut(s) 213
BsoBI CYCGRG 1 cut(s) 47
Bsp13I TCCGGA 1 cut(s) 429
Bsp143I GATC 5 cut(s) 51, 93, 426, 676, 707
Bsp1720I GCTNAGC 2 cut(s) 66, 694
BspACI CCGC 1 cut(s) 487
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 616
BspEI TCCGGA 1 cut(s) 429
BspLI GGNNCC 2 cut(s) 35, 241
BspPI GGATC 2 cut(s) 101, 421
BspT107I GGYRCC 2 cut(s) 33, 239
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 3 cut(s) 34, 514, 552
BssECI CCNNGG 4 cut(s) 121, 208, 253, 450
BssMI GATC 5 cut(s) 51, 93, 426, 676, 707
BssT1I CCWWGG 2 cut(s) 121, 450
Bst2UI CCWGG 2 cut(s) 210, 372
Bst6I CTCTTC 1 cut(s) 596
BstAPI GCANNNNNTGC 2 cut(s) 519, 587
BstC8I GCNNGC 1 cut(s) 579
BstDEI CTNAG 5 cut(s) 66, 624, 694, 729, 744
BstDSI CCRYGG 1 cut(s) 253
BstENI CCTNNNNNAGG 2 cut(s) 125, 449
BstF5I GGATG 2 cut(s) 308, 460
BstKTI GATC 5 cut(s) 54, 96, 429, 679, 710
BstMAI GTCTC 2 cut(s) 538, 706
BstMBI GATC 5 cut(s) 51, 93, 426, 676, 707
BstMWI GCNNNNNNNGC 5 cut(s) 219, 510, 519, 587, 690
BstNI CCWGG 2 cut(s) 210, 372
BstSCI CCNGG 3 cut(s) 208, 370, 656
BstV1I GCAGC 4 cut(s) 534, 641, 682, 727
BstX2I RGATCY 2 cut(s) 93, 426
BstYI RGATCY 2 cut(s) 93, 426
BsuRI GGCC 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 253
BtsCI GGATG 2 cut(s) 308, 460
BtsI GCAGTG 1 cut(s) 691
BtsIMutI CAGTG 2 cut(s) 27, 691
Cac8I GCNNGC 1 cut(s) 579
CaiI CAGNNNCTG 1 cut(s) 547
Cfr13I GGNCC 1 cut(s) 407
CseI GACGC 2 cut(s) 71, 690
Csp6I GTAC 1 cut(s) 240
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 5 cut(s) 66, 624, 694, 729, 744
DpnI GATC 5 cut(s) 53, 95, 428, 678, 709
DpnII GATC 5 cut(s) 51, 93, 426, 676, 707
DraI TTTAAA 1 cut(s) 151
DraIII CACNNNGTG 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 596
EarI CTCTTC 1 cut(s) 596
Eco130I CCWWGG 2 cut(s) 121, 450
Eco47I GGWCC 1 cut(s) 407
Eco88I CYCGRG 1 cut(s) 47
EcoNI CCTNNNNNAGG 2 cut(s) 125, 449
EcoRII CCWGG 2 cut(s) 208, 370
EcoT14I CCWWGG 2 cut(s) 121, 450
ErhI CCWWGG 2 cut(s) 121, 450
FaiI YATR 6 cut(s) 144, 158, 188, 234, 261, 474
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FaqI GGGAC 1 cut(s) 98
Fnu4HI GCNGC 4 cut(s) 523, 630, 671, 741
FokI GGATG 2 cut(s) 315, 467
Fsp4HI GCNGC 4 cut(s) 523, 630, 671, 741
FspBI CTAG 1 cut(s) 122
GluI GCNGC 4 cut(s) 523, 630, 671, 741
HaeIII GGCC 1 cut(s) 213
HapII CCGG 2 cut(s) 430, 658
HgaI GACGC 2 cut(s) 71, 690
HincII GTYRAC 2 cut(s) 204, 478
HindII GTYRAC 2 cut(s) 204, 478
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 1 cut(s) 19
HpaI GTTAAC 1 cut(s) 204
HpaII CCGG 2 cut(s) 430, 658
HphI GGTGA 3 cut(s) 125, 368, 439
Hpy166II GTNNAC 2 cut(s) 204, 478
Hpy188I TCNGA 3 cut(s) 543, 625, 642
Hpy188III TCNNGA 5 cut(s) 49, 101, 317, 430, 711
Hpy8I GTNNAC 2 cut(s) 204, 478
Hpy99I CGWCG 2 cut(s) 59, 684
HpyAV CCTTC 4 cut(s) 258, 279, 377, 658
HpyCH4V TGCA 5 cut(s) 77, 522, 590, 611, 725
HpyF10VI GCNNNNNNNGC 5 cut(s) 219, 510, 519, 587, 690
HpyF3I CTNAG 5 cut(s) 66, 624, 694, 729, 744
Kpn2I TCCGGA 1 cut(s) 429
KpnI GGTACC 1 cut(s) 243
KspAI GTTAAC 1 cut(s) 204
Kzo9I GATC 5 cut(s) 51, 93, 426, 676, 707
LmnI GCTCC 4 cut(s) 234, 535, 651, 667
Lsp1109I GCAGC 4 cut(s) 534, 641, 682, 727
LweI GCATC 3 cut(s) 106, 428, 734
MaeI CTAG 1 cut(s) 122
MaeIII GTNAC 3 cut(s) 167, 356, 550
MalI GATC 5 cut(s) 53, 95, 428, 678, 709
MboI GATC 5 cut(s) 51, 93, 426, 676, 707
MboII GAAGA 5 cut(s) 52, 294, 607, 610, 613
MflI RGATCY 2 cut(s) 93, 426
MluCI AATT 2 cut(s) 153, 537
MroI TCCGGA 1 cut(s) 429
MseI TTAA 5 cut(s) 9, 150, 203, 348, 441
MspI CCGG 2 cut(s) 430, 658
MspR9I CCNGG 3 cut(s) 210, 372, 658
Mva1269I GAATGC 1 cut(s) 77
MvaI CCWGG 2 cut(s) 210, 372
MwoI GCNNNNNNNGC 5 cut(s) 219, 510, 519, 587, 690
NciI CCSGG 1 cut(s) 658
NdeII GATC 5 cut(s) 51, 93, 426, 676, 707
NlaIV GGNNCC 2 cut(s) 35, 241
NmuCI GTSAC 2 cut(s) 167, 356
PaeR7I CTCGAG 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PctI GAATGC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 19
PfoI TCCNGGA 1 cut(s) 370
PkrI GCNGC 4 cut(s) 524, 631, 672, 742
Psp6I CCWGG 2 cut(s) 208, 370
PspGI CCWGG 2 cut(s) 208, 370
PspN4I GGNNCC 2 cut(s) 35, 241
PspPI GGNCC 1 cut(s) 407
PstNI CAGNNNCTG 1 cut(s) 547
PsuI RGATCY 2 cut(s) 93, 426
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SaqAI TTAA 5 cut(s) 9, 150, 203, 348, 441
SatI GCNGC 4 cut(s) 523, 630, 671, 741
Sau3AI GATC 5 cut(s) 51, 93, 426, 676, 707
Sau96I GGNCC 1 cut(s) 407
ScrFI CCNGG 3 cut(s) 210, 372, 658
SfaNI GCATC 3 cut(s) 106, 428, 734
Sfr274I CTCGAG 1 cut(s) 47
SinI GGWCC 1 cut(s) 407
SlaI CTCGAG 1 cut(s) 47
SmlI CTYRAG 2 cut(s) 47, 99
SmoI CTYRAG 2 cut(s) 47, 99
Sse9I AATT 2 cut(s) 153, 537
SsiI CCGC 1 cut(s) 487
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 3 cut(s) 208, 370, 656
StyI CCWWGG 2 cut(s) 121, 450
TaqI TCGA 4 cut(s) 48, 54, 679, 710
TasI AATT 2 cut(s) 153, 537
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 5 cut(s) 9, 150, 203, 348, 441
Tru9I TTAA 5 cut(s) 9, 150, 203, 348, 441
TscAI CASTG 2 cut(s) 34, 691
TseFI GTSAC 2 cut(s) 167, 356
TseI GCWGC 4 cut(s) 522, 629, 670, 740
Tsp45I GTSAC 2 cut(s) 167, 356
TspDTI ATGAA 2 cut(s) 17, 203
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 2 cut(s) 34, 691
VpaK11BI GGWCC 1 cut(s) 407
XagI CCTNNNNNAGG 2 cut(s) 125, 449
XapI RAATTY 1 cut(s) 537
XhoI CTCGAG 1 cut(s) 47
XmaJI CCTAGG 1 cut(s) 121
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.