FvH4_1g20340

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001589
Physical Location & Seq
Forward (+)
12561234 .. 12563980
2747 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20340.t1

Sequence Viewer

Length: 747 bp
ATGAAGTTCAACATCGCGAATCCCACCACTGGGTGCCAGAAGAAGCTCGAGATCGACGATGACACCAAGCTGCGAGCATTCTGGGACAAGAGGATCAGTCAAGAAGTCAATGGTGATGCACTTGGCGAGGAGTTCAGGGGATACGTCTTCAAAATCATGGGAGGCTGTGACAAGCAAGGCTTTCCTATGAAGCAAGGAGTGTTGACTCCAGGGCGTGTTCGCCTTTTGCTTCACAGGGGAACCCCATGCTTCCGAGGACATGGAAGGAGGAATGGTGAGCGAAGAAGGAAGTCCGTTCGTGGATGCATAGTTAGTCCAGACCTCTCAGTACTGAACTTGGTCATAGTTAAGAAAGGTGACAATGACCTTCCTGGACTGACTGATATTGAAAAGCCAAGAATGAGAGGTCCAAAGAGGGCATCCAAGATCCGCAAGCTATTTAACCTCACCAAGGATGATGATGTGAGGAAGTACGTCAACACATACCGCAGGAAATTCACATCCAAAACTGGCAAGAACTGCAGCAAAGCTCCAAAAATTCAGAGGCTGGTTACTCCTTTGACTTTACAGAGGAAGCGAGCAAGGATTGCAGAGAAGAAGAAGAGAGTTGTGAAGGCCAAGTCAGAGGCTGCAGAGTATCAGAAGCTACTGGCTTCCAGGTTGAAGGAGCAGCGTGAGCGCCGCAGTGAGAGCTTAGCCAAGAAGAGATCAAGACTCTCATCTGCCACCAAGCCATCTGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

249

Amino Acids

28.31

Weight (kDa)

10.75

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6e PF01092 1 - 128 9.7e-53 Ribosomal protein S6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 33
AccII CGCG 1 cut(s) 17
AciI CCGC 3 cut(s) 430, 487, 682
AclWI GGATC 2 cut(s) 101, 421
AcsI RAATTY 2 cut(s) 494, 537
AdeI CACNNNGTG 1 cut(s) 33
AfaI GTAC 2 cut(s) 330, 473
AfiI CCNNNNNNNGG 3 cut(s) 29, 30, 451
AgsI TTSAA 4 cut(s) 10, 151, 389, 664
AjnI CCWGG 3 cut(s) 208, 370, 656
AluBI AGCT 6 cut(s) 46, 70, 436, 530, 646, 693
AluI AGCT 6 cut(s) 46, 70, 436, 530, 646, 693
AlwI GGATC 2 cut(s) 101, 421
AlwNI CAGNNNCTG 2 cut(s) 547, 629
Ama87I CYCGRG 1 cut(s) 47
AoxI GGCC 1 cut(s) 615
ApeKI GCWGC 5 cut(s) 70, 522, 629, 670, 740
ApoI RAATTY 2 cut(s) 494, 537
AspLEI GCGC 1 cut(s) 681
AspS9I GGNCC 1 cut(s) 407
AsuHPI GGTGA 4 cut(s) 125, 287, 368, 439
AvaI CYCGRG 1 cut(s) 47
AvaII GGWCC 1 cut(s) 407
BanI GGYRCC 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 139
BbvI GCAGC 5 cut(s) 57, 534, 616, 682, 727
BccI CCATC 1 cut(s) 742
BciT130I CCWGG 3 cut(s) 210, 372, 658
BciVI GTATCC 1 cut(s) 134
BfmI CTRYAG 2 cut(s) 520, 630
BfoI RGCGCY 1 cut(s) 682
BfuI GTATCC 1 cut(s) 134
BisI GCNGC 6 cut(s) 71, 523, 630, 671, 682, 741
BlpI GCTNAGC 1 cut(s) 694
BlsI GCNGC 6 cut(s) 72, 524, 631, 672, 683, 742
BmcAI AGTACT 1 cut(s) 330
Bme1390I CCNGG 3 cut(s) 210, 372, 658
Bme18I GGWCC 1 cut(s) 407
BmeT110I CYCGRG 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 407
BmiI GGNNCC 2 cut(s) 35, 241
BmrFI CCNGG 3 cut(s) 210, 372, 658
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 3 cut(s) 106, 293, 428
BmuI ACTGGG 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 139
BpmI CTGGAG 1 cut(s) 192
Bpu1102I GCTNAGC 1 cut(s) 694
BsaJI CCNNGG 3 cut(s) 209, 253, 450
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 30, 451
Bse1I ACTGG 3 cut(s) 34, 514, 654
BseBI CCWGG 3 cut(s) 210, 372, 658
BseDI CCNNGG 3 cut(s) 209, 253, 450
BseGI GGATG 4 cut(s) 308, 419, 460, 500
BseLI CCNNNNNNNGG 3 cut(s) 29, 30, 451
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 3 cut(s) 34, 514, 654
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 5 cut(s) 57, 534, 616, 682, 727
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 1 cut(s) 617
BshNI GGYRCC 1 cut(s) 33
BsiHKCI CYCGRG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 3 cut(s) 29, 30, 451
BsmFI GGGAC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 77
BsnI GGCC 1 cut(s) 617
BsoBI CYCGRG 1 cut(s) 47
Bsp143I GATC 4 cut(s) 51, 93, 426, 707
Bsp1720I GCTNAGC 1 cut(s) 694
Bsp68I TCGCGA 1 cut(s) 17
BspACI CCGC 3 cut(s) 430, 487, 682
BspANI GGCC 1 cut(s) 617
BspCNI CTCAG 1 cut(s) 338
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 2 cut(s) 35, 241
BspMAI CTGCAG 2 cut(s) 524, 634
BspPI GGATC 2 cut(s) 101, 421
BspT107I GGYRCC 1 cut(s) 33
BsrI ACTGG 3 cut(s) 34, 514, 654
BssECI CCNNGG 3 cut(s) 209, 253, 450
BssMI GATC 4 cut(s) 51, 93, 426, 707
BssT1I CCWWGG 1 cut(s) 450
Bst2UI CCWGG 3 cut(s) 210, 372, 658
Bst6I CTCTTC 2 cut(s) 596, 698
BstAPI GCANNNNNTGC 2 cut(s) 519, 587
BstC8I GCNNGC 3 cut(s) 75, 434, 579
BstDEI CTNAG 3 cut(s) 325, 694, 744
BstENI CCTNNNNNAGG 1 cut(s) 449
BstF5I GGATG 4 cut(s) 308, 419, 460, 500
BstFNI CGCG 1 cut(s) 17
BstH2I RGCGCY 1 cut(s) 682
BstHHI GCGC 1 cut(s) 681
BstKTI GATC 4 cut(s) 54, 96, 429, 710
BstMBI GATC 4 cut(s) 51, 93, 426, 707
BstMWI GCNNNNNNNGC 4 cut(s) 519, 587, 676, 690
BstNI CCWGG 3 cut(s) 210, 372, 658
BstSCI CCNGG 3 cut(s) 208, 370, 656
BstSFI CTRYAG 2 cut(s) 520, 630
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 5 cut(s) 57, 534, 616, 682, 727
BstV2I GAAGAC 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 426
BstYI RGATCY 1 cut(s) 426
BsuI GTATCC 1 cut(s) 134
BsuRI GGCC 1 cut(s) 617
BtsCI GGATG 4 cut(s) 308, 419, 460, 500
BtsI GCAGTG 1 cut(s) 691
BtsIMutI CAGTG 2 cut(s) 27, 691
BtuMI TCGCGA 1 cut(s) 17
Cac8I GCNNGC 3 cut(s) 75, 434, 579
CaiI CAGNNNCTG 2 cut(s) 547, 629
CfoI GCGC 1 cut(s) 681
Cfr13I GGNCC 1 cut(s) 407
Csp6I GTAC 2 cut(s) 329, 472
CviAII CATG 3 cut(s) 157, 246, 260
CviQI GTAC 2 cut(s) 329, 472
DdeI CTNAG 3 cut(s) 325, 694, 744
DpnI GATC 4 cut(s) 53, 95, 428, 709
DpnII GATC 4 cut(s) 51, 93, 426, 707
DraIII CACNNNGTG 1 cut(s) 33
Eam1104I CTCTTC 2 cut(s) 596, 698
EarI CTCTTC 2 cut(s) 596, 698
Eco130I CCWWGG 1 cut(s) 450
Eco47I GGWCC 1 cut(s) 407
Eco88I CYCGRG 1 cut(s) 47
EcoNI CCTNNNNNAGG 1 cut(s) 449
EcoRII CCWGG 3 cut(s) 208, 370, 656
EcoT14I CCWWGG 1 cut(s) 450
EcoT22I ATGCAT 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 3 cut(s) 160, 249, 263
FaiI YATR 7 cut(s) 158, 188, 247, 261, 308, 344, 484
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FaqI GGGAC 1 cut(s) 98
FatI CATG 3 cut(s) 156, 245, 259
Fnu4HI GCNGC 6 cut(s) 71, 523, 630, 671, 682, 741
FokI GGATG 4 cut(s) 315, 406, 467, 487
Fsp4HI GCNGC 6 cut(s) 71, 523, 630, 671, 682, 741
GlaI GCGC 1 cut(s) 680
GluI GCNGC 6 cut(s) 71, 523, 630, 671, 682, 741
GsuI CTGGAG 1 cut(s) 192
HaeII RGCGCY 1 cut(s) 682
HaeIII GGCC 1 cut(s) 617
HhaI GCGC 1 cut(s) 681
Hin1II CATG 3 cut(s) 160, 249, 263
Hin6I GCGC 1 cut(s) 679
HinP1I GCGC 1 cut(s) 679
HincII GTYRAC 2 cut(s) 204, 478
HindII GTYRAC 2 cut(s) 204, 478
HinfI GANTC 3 cut(s) 19, 205, 714
HphI GGTGA 4 cut(s) 125, 287, 368, 439
Hpy166II GTNNAC 2 cut(s) 204, 478
Hpy188I TCNGA 4 cut(s) 254, 543, 625, 642
Hpy188III TCNNGA 5 cut(s) 16, 49, 101, 317, 711
Hpy8I GTNNAC 2 cut(s) 204, 478
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 5 cut(s) 258, 279, 377, 607, 658
HpyCH4IV ACGT 2 cut(s) 144, 474
HpyCH4V TGCA 5 cut(s) 119, 306, 522, 590, 632
HpyF10VI GCNNNNNNNGC 4 cut(s) 519, 587, 676, 690
HpyF3I CTNAG 3 cut(s) 325, 694, 744
HpySE526I ACGT 2 cut(s) 144, 474
Hsp92II CATG 3 cut(s) 160, 249, 263
HspAI GCGC 1 cut(s) 679
Kzo9I GATC 4 cut(s) 51, 93, 426, 707
LmnI GCTCC 2 cut(s) 535, 667
Lsp1109I GCAGC 5 cut(s) 57, 534, 616, 682, 727
LweI GCATC 3 cut(s) 106, 293, 428
MaeII ACGT 2 cut(s) 144, 474
MaeIII GTNAC 3 cut(s) 167, 356, 550
MalI GATC 4 cut(s) 53, 95, 428, 709
MboI GATC 4 cut(s) 51, 93, 426, 707
MboII GAAGA 7 cut(s) 52, 139, 294, 607, 610, 613, 715
MflI RGATCY 1 cut(s) 426
MluCI AATT 2 cut(s) 494, 537
MlyI GAGTC 2 cut(s) 199, 708
Mph1103I ATGCAT 1 cut(s) 308
MseI TTAA 2 cut(s) 348, 441
MspR9I CCNGG 3 cut(s) 210, 372, 658
Mva1269I GAATGC 1 cut(s) 77
MvaI CCWGG 3 cut(s) 210, 372, 658
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 4 cut(s) 519, 587, 676, 690
NdeII GATC 4 cut(s) 51, 93, 426, 707
NlaIII CATG 3 cut(s) 160, 249, 263
NlaIV GGNNCC 2 cut(s) 35, 241
NmuCI GTSAC 2 cut(s) 167, 356
NruI TCGCGA 1 cut(s) 17
NsiI ATGCAT 1 cut(s) 308
PaeR7I CTCGAG 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PctI GAATGC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 19
PfoI TCCNGGA 1 cut(s) 370
PkrI GCNGC 6 cut(s) 72, 524, 631, 672, 683, 742
PleI GAGTC 2 cut(s) 199, 708
PpsI GAGTC 2 cut(s) 199, 708
Psp6I CCWGG 3 cut(s) 208, 370, 656
PspGI CCWGG 3 cut(s) 208, 370, 656
PspN4I GGNNCC 2 cut(s) 35, 241
PspPI GGNCC 1 cut(s) 407
PstI CTGCAG 2 cut(s) 524, 634
PstNI CAGNNNCTG 2 cut(s) 547, 629
PsuI RGATCY 1 cut(s) 426
RruI TCGCGA 1 cut(s) 17
RsaI GTAC 2 cut(s) 330, 473
RsaNI GTAC 2 cut(s) 329, 472
SaqAI TTAA 2 cut(s) 348, 441
SatI GCNGC 6 cut(s) 71, 523, 630, 671, 682, 741
Sau3AI GATC 4 cut(s) 51, 93, 426, 707
Sau96I GGNCC 1 cut(s) 407
ScaI AGTACT 1 cut(s) 330
SchI GAGTC 2 cut(s) 199, 708
ScrFI CCNGG 3 cut(s) 210, 372, 658
SfaNI GCATC 3 cut(s) 106, 293, 428
SfcI CTRYAG 2 cut(s) 520, 630
Sfr274I CTCGAG 1 cut(s) 47
SinI GGWCC 1 cut(s) 407
SlaI CTCGAG 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 2 cut(s) 494, 537
SsiI CCGC 3 cut(s) 430, 487, 682
StyD4I CCNGG 3 cut(s) 208, 370, 656
StyI CCWWGG 1 cut(s) 450
TaiI ACGT 2 cut(s) 147, 477
TaqI TCGA 2 cut(s) 48, 54
TasI AATT 2 cut(s) 494, 537
TatI WGTACW 1 cut(s) 328
TauI GCSGC 1 cut(s) 684
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 2 cut(s) 348, 441
Tru9I TTAA 2 cut(s) 348, 441
TscAI CASTG 2 cut(s) 34, 691
TseFI GTSAC 2 cut(s) 167, 356
TseI GCWGC 5 cut(s) 70, 522, 629, 670, 740
Tsp45I GTSAC 2 cut(s) 167, 356
TspDTI ATGAA 2 cut(s) 17, 203
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 2 cut(s) 34, 691
VpaK11BI GGWCC 1 cut(s) 407
XagI CCTNNNNNAGG 1 cut(s) 449
XapI RAATTY 2 cut(s) 494, 537
XhoI CTCGAG 1 cut(s) 47
ZrmI AGTACT 1 cut(s) 330
Zsp2I ATGCAT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.