RchiOBHm_Chr1g0378681

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001589
Physical Location & Seq
Forward (+)
65072826 .. 65073344
519 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60209

Sequence Viewer

Length: 237 bp
ATGGGAGGCTGGGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAGCCGTGGTCACGGAAGGAGGAATGGAGAGAGGAGGAGAAAATCTGTCCGGTCACAATGATCTTCCTGGTTTGGCCGACACTGAGAAGCCTAGGATGAGAGGTCCAAAGAGGGCATCTAAGATCCGAAAGCTCTTCAATCTCTCAAAGGAGGATGATGTTCGAAAGTATGTGAACACACACAGTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000028 GO:0000075 GO:0000082 GO:0000184 GO:0000278 GO:0000281 GO:0000462 GO:0000910 GO:0000956 GO:0001775 GO:0001776 GO:0001890 GO:0002181 GO:0002252 GO:0002260 GO:0002262 GO:0002263 GO:0002285 GO:0002286 GO:0002309 GO:0002366 GO:0002376 GO:0002520 GO:0002521 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005844 GO:0005938 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006915 GO:0006924 GO:0006955 GO:0006996 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007346 GO:0007369 GO:0007568 GO:0008104 GO:0008150 GO:0008152 GO:0008219 GO:0008283 GO:0008340 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009636 GO:0009653 GO:0009719 GO:0009725 GO:0009790 GO:0009892 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0010941 GO:0010942 GO:0012501 GO:0012505 GO:0015031 GO:0015833 GO:0015935 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0019222 GO:0019439 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022605 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0023052 GO:0030097 GO:0030098 GO:0030099 GO:0030154 GO:0030217 GO:0030218 GO:0030425 GO:0030490 GO:0030587 GO:0030684 GO:0030686 GO:0031929 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032504 GO:0032868 GO:0032943 GO:0032991 GO:0033036 GO:0033077 GO:0033365 GO:0033500 GO:0034101 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0035556 GO:0035690 GO:0035770 GO:0036464 GO:0036477 GO:0042098 GO:0042110 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042493 GO:0042592 GO:0042593 GO:0042886 GO:0042981 GO:0042995 GO:0043005 GO:0043029 GO:0043043 GO:0043065 GO:0043066 GO:0043067 GO:0043068 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043434 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044297 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044463 GO:0044464 GO:0044703 GO:0044770 GO:0044772 GO:0044843 GO:0045047 GO:0045184 GO:0045321 GO:0045471 GO:0045786 GO:0045930 GO:0046483 GO:0046649 GO:0046651 GO:0046677 GO:0046700 GO:0046907 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048534 GO:0048598 GO:0048608 GO:0048609 GO:0048731 GO:0048821 GO:0048856 GO:0048869 GO:0048872 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0051703 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0060548 GO:0061458 GO:0061515 GO:0061640 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070227 GO:0070231 GO:0070661 GO:0070727 GO:0070887 GO:0070925 GO:0070938 GO:0070972 GO:0071236 GO:0071310 GO:0071361 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0071887 GO:0071944 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0090702 GO:0097159 GO:0097237 GO:0097305 GO:0097306 GO:0097447 GO:0097458 GO:0099120 GO:0099568 GO:0120025 GO:0120038 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901652 GO:1901698 GO:1901700 GO:1901701 GO:1901888 GO:1901889 GO:1903047 GO:1903347 GO:1990904 GO:2000810
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko03320 ko04066 ko04150 ko04151 ko04210 ko04214 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map03320 map04066 map04150 map04151 map04210 map04214 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

78

Amino Acids

8.68

Weight (kDa)

9.89

Isoelectric Point (pI)

28.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 163
AcoI YGGCCR 1 cut(s) 120
AgsI TTSAA 1 cut(s) 184
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
AlwI GGATC 1 cut(s) 163
AoxI GGCC 1 cut(s) 120
AspA2I CCTAGG 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 149
AsuII TTCGAA 1 cut(s) 208
AvaII GGWCC 1 cut(s) 149
AvrII CCTAGG 1 cut(s) 137
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 114
BfaI CTAG 1 cut(s) 138
BlnI CCTAGG 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 170
Bpu14I TTCGAA 1 cut(s) 208
BsaJI CCNNGG 2 cut(s) 51, 137
BsaWI WCCGGW 1 cut(s) 95
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 51, 137
BseGI GGATG 2 cut(s) 147, 205
BseMII CTCAG 1 cut(s) 120
BseRI GAGGAG 2 cut(s) 93, 96
BseYI CCCAGC 1 cut(s) 9
BshFI GGCC 1 cut(s) 122
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 1 cut(s) 122
Bsp119I TTCGAA 1 cut(s) 208
Bsp143I GATC 2 cut(s) 106, 168
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 26
BspPI GGATC 1 cut(s) 163
BspQI GCTCTTC 1 cut(s) 185
BspT104I TTCGAA 1 cut(s) 208
BssECI CCNNGG 2 cut(s) 51, 137
BssMI GATC 2 cut(s) 106, 168
BssT1I CCWWGG 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 185
BstBI TTCGAA 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 129, 165
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 147, 205
BstKTI GATC 2 cut(s) 109, 171
BstMBI GATC 2 cut(s) 106, 168
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BsuRI GGCC 1 cut(s) 122
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 2 cut(s) 147, 205
BtsIMutI CAGTG 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 149
CviJI RGCY 5 cut(s) 9, 50, 122, 136, 178
CviKI_1 RGCY 5 cut(s) 9, 50, 122, 136, 178
DdeI CTNAG 2 cut(s) 129, 165
DpnI GATC 2 cut(s) 108, 170
DpnII GATC 2 cut(s) 106, 168
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 137
FaiI YATR 1 cut(s) 216
FaqI GGGAC 1 cut(s) 26
FokI GGATG 2 cut(s) 154, 212
FspBI CTAG 1 cut(s) 138
GsaI CCCAGC 1 cut(s) 13
HaeIII GGCC 1 cut(s) 122
HapII CCGG 1 cut(s) 96
HpaII CCGG 1 cut(s) 96
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 173
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 230
HpyF3I CTNAG 2 cut(s) 129, 165
Kzo9I GATC 2 cut(s) 106, 168
LguI GCTCTTC 1 cut(s) 185
LpnPI CCDG 4 cut(s) 23, 99, 109, 126
LweI GCATC 1 cut(s) 170
MaeI CTAG 1 cut(s) 138
MaeIII GTNAC 2 cut(s) 55, 98
MalI GATC 2 cut(s) 108, 170
MboI GATC 2 cut(s) 106, 168
MboII GAAGA 2 cut(s) 101, 172
MflI RGATCY 1 cut(s) 168
MnlI CCTC 6 cut(s) 59, 71, 74, 140, 150, 190
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
NdeII GATC 2 cut(s) 106, 168
NlaIV GGNNCC 1 cut(s) 26
NmuCI GTSAC 2 cut(s) 55, 98
NspV TTCGAA 1 cut(s) 208
PciSI GCTCTTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 112
PspFI CCCAGC 1 cut(s) 9
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 26
PspPI GGNCC 1 cut(s) 149
PsuI RGATCY 1 cut(s) 168
SapI GCTCTTC 1 cut(s) 185
Sau3AI GATC 2 cut(s) 106, 168
Sau96I GGNCC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 114
SetI ASST 2 cut(s) 151, 180
SfaNI GCATC 1 cut(s) 170
SfuI TTCGAA 1 cut(s) 208
SinI GGWCC 1 cut(s) 149
SspMI CTAG 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 1 cut(s) 137
TaaI ACNGT 1 cut(s) 230
TaqI TCGA 1 cut(s) 208
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 2 cut(s) 55, 98
Tsp45I GTSAC 2 cut(s) 55, 98
TspDTI ATGAA 1 cut(s) 47
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 149
XmaJI CCTAGG 1 cut(s) 137
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.