Rroxscaffold_6G00413940

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001589
Physical Location & Seq
Forward (+)
36290724 .. 36292450
1727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00413940.1

Sequence Viewer

Length: 606 bp
ATGCTCTCTTCGTCCTCGATTGAACACACAACCCCCGTCGCGAAATCGATAGCCCAAGAGAAGAACTTGGGCGGGGAAGAGTTGAGATTTTTGCAAGAGAACTGGGTGATTAGACGGGAAGAAGAACTTGCGGAGGAGAACTCATGGGAAGGTCTGGGATTTTGGCTATTAGGTTTGGGGCATTGCGAACTGCTGAGCATTCTGGTACAAGAGATCAGTCAAGAAGTCAATGGTGATGCACAGGTTGTGAGACTCGGGAGTTATGTGTTCAAAATTATGGGAGGTTGTGACAAGAAATTGTTTTCTTCGAAGCAAGGAGTGTTAACCCCAGGGTGTGTTCGTCTTTTGCTCCACAGGGGAGCCTCATGCTTCCAAGGACATGGAAGGAGGAATAGTATGCGAAGAAGGAAGTCTGTTCATGGATGCATTATTAGTCCAGACCTTTTTGTGTTGAACTTGGTCATTGTTAAGAAAGGTGACTATGACCTTCTTGGACTGACTGATGTTGAAAAGCCAACAGTGAGAGGTCCAAAGAGGGCTTCCAAGATCCACAAGCTATTTAACCTTACTAAGGACGATGATGTTAGGAAGTATGTCAACACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

201

Amino Acids

22.58

Weight (kDa)

8.98

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6e PF01092 68 - 168 1.4e-24 Ribosomal protein S6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 41
AciI CCGC 2 cut(s) 72, 131
AclWI GGATC 1 cut(s) 541
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 571
AgsI TTSAA 4 cut(s) 23, 271, 454, 509
AjnI CCWGG 1 cut(s) 328
AjuI GAANNNNNNNTTGG 2 cut(s) 523, 555
AluBI AGCT 1 cut(s) 556
AluI AGCT 1 cut(s) 556
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 1 cut(s) 541
Ama87I CYCGRG 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 527
AsuHPI GGTGA 3 cut(s) 118, 245, 488
AsuII TTCGAA 1 cut(s) 308
AvaI CYCGRG 1 cut(s) 254
AvaII GGWCC 1 cut(s) 527
BciT130I CCWGG 1 cut(s) 330
BcoDI GTCTC 1 cut(s) 244
BlpI GCTNAGC 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 330
Bme18I GGWCC 1 cut(s) 527
BmeT110I CYCGRG 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 527
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 330
BmrI ACTGGG 1 cut(s) 112
BmsI GCATC 2 cut(s) 226, 413
BmuI ACTGGG 1 cut(s) 112
BplI GAGNNNNNCTC 2 cut(s) 125, 157
Bpu1102I GCTNAGC 1 cut(s) 194
Bpu14I TTCGAA 1 cut(s) 308
Bsa29I ATCGAT 1 cut(s) 47
BsaJI CCNNGG 3 cut(s) 328, 329, 373
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
Bsc4I CCNNNNNNNGG 1 cut(s) 571
Bse1I ACTGG 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 181
BseBI CCWGG 1 cut(s) 330
BseCI ATCGAT 1 cut(s) 47
BseDI CCNNGG 3 cut(s) 328, 329, 373
BseGI GGATG 1 cut(s) 428
BseLI CCNNNNNNNGG 1 cut(s) 571
BseMI GCAATG 1 cut(s) 181
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 41
BshVI ATCGAT 1 cut(s) 47
BsiHKCI CYCGRG 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 571
BsmAI GTCTC 1 cut(s) 244
BsmI GAATGC 1 cut(s) 198
BsoBI CYCGRG 1 cut(s) 254
Bsp119I TTCGAA 1 cut(s) 308
Bsp143I GATC 2 cut(s) 213, 546
Bsp1720I GCTNAGC 1 cut(s) 194
Bsp68I TCGCGA 1 cut(s) 41
BspACI CCGC 2 cut(s) 72, 131
BspCNI CTCAG 1 cut(s) 186
BspDI ATCGAT 1 cut(s) 47
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 361
BspPI GGATC 1 cut(s) 541
BspT104I TTCGAA 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 181
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 3 cut(s) 328, 329, 373
BssMI GATC 2 cut(s) 213, 546
BssT1I CCWWGG 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 520
Bst6I CTCTTC 2 cut(s) 13, 72
BstBI TTCGAA 1 cut(s) 308
BstDEI CTNAG 2 cut(s) 194, 570
BstENI CCTNNNNNAGG 1 cut(s) 569
BstF5I GGATG 1 cut(s) 428
BstFNI CGCG 1 cut(s) 41
BstKTI GATC 2 cut(s) 216, 549
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 2 cut(s) 213, 546
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 328
BstUI CGCG 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 546
BstXI CCANNNNNNTGG 1 cut(s) 380
BstYI RGATCY 1 cut(s) 546
Bsu15I ATCGAT 1 cut(s) 47
BsuTUI ATCGAT 1 cut(s) 47
BtsCI GGATG 1 cut(s) 428
BtsIMutI CAGTG 1 cut(s) 525
BtuMI TCGCGA 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 527
ClaI ATCGAT 1 cut(s) 47
Csp6I GTAC 1 cut(s) 206
CviAII CATG 4 cut(s) 144, 366, 380, 419
CviJI RGCY 6 cut(s) 53, 166, 362, 514, 539, 556
CviKI_1 RGCY 6 cut(s) 53, 166, 362, 514, 539, 556
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 2 cut(s) 194, 570
DpnI GATC 2 cut(s) 215, 548
DpnII GATC 2 cut(s) 213, 546
Eam1104I CTCTTC 2 cut(s) 13, 72
EarI CTCTTC 2 cut(s) 13, 72
Eco130I CCWWGG 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 527
Eco88I CYCGRG 1 cut(s) 254
EcoNI CCTNNNNNAGG 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 373
EcoT22I ATGCAT 1 cut(s) 428
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 4 cut(s) 147, 369, 383, 422
FaiI YATR 9 cut(s) 145, 264, 278, 367, 381, 398, 420, 483, 594
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FatI CATG 4 cut(s) 143, 365, 379, 418
FauI CCCGC 1 cut(s) 65
FokI GGATG 1 cut(s) 435
Hin1II CATG 4 cut(s) 147, 369, 383, 422
HincII GTYRAC 2 cut(s) 324, 598
HindII GTYRAC 2 cut(s) 324, 598
HinfI GANTC 1 cut(s) 252
HpaI GTTAAC 1 cut(s) 324
HphI GGTGA 3 cut(s) 118, 245, 488
Hpy166II GTNNAC 2 cut(s) 324, 598
Hpy188III TCNNGA 4 cut(s) 40, 221, 256, 437
Hpy8I GTNNAC 2 cut(s) 324, 598
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 4 cut(s) 143, 378, 399, 497
HpyCH4III ACNGT 1 cut(s) 520
HpyCH4V TGCA 3 cut(s) 94, 239, 426
HpyF3I CTNAG 2 cut(s) 194, 570
Hsp92II CATG 4 cut(s) 147, 369, 383, 422
KspAI GTTAAC 1 cut(s) 324
Kzo9I GATC 2 cut(s) 213, 546
LmnI GCTCC 2 cut(s) 354, 359
LpnPI CCDG 8 cut(s) 88, 140, 188, 227, 315, 340, 342, 450
LweI GCATC 2 cut(s) 226, 413
MaeIII GTNAC 2 cut(s) 287, 476
MalI GATC 2 cut(s) 215, 548
MboI GATC 2 cut(s) 213, 546
MboII GAAGA 6 cut(s) 73, 89, 131, 134, 297, 414
MflI RGATCY 1 cut(s) 546
MluCI AATT 2 cut(s) 273, 296
MlyI GAGTC 1 cut(s) 246
MnlI CCTC 7 cut(s) 25, 127, 275, 373, 381, 518, 528
Mph1103I ATGCAT 1 cut(s) 428
MseI TTAA 4 cut(s) 323, 468, 561, 604
MspR9I CCNGG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 198
MvaI CCWGG 1 cut(s) 330
MvnI CGCG 1 cut(s) 41
NdeII GATC 2 cut(s) 213, 546
NlaIII CATG 4 cut(s) 147, 369, 383, 422
NlaIV GGNNCC 1 cut(s) 361
NmuCI GTSAC 2 cut(s) 287, 476
NruI TCGCGA 1 cut(s) 41
NsiI ATGCAT 1 cut(s) 428
NspV TTCGAA 1 cut(s) 308
PasI CCCWGGG 1 cut(s) 329
PctI GAATGC 1 cut(s) 198
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 1 cut(s) 361
PspPI GGNCC 1 cut(s) 527
PsuI RGATCY 1 cut(s) 546
RruI TCGCGA 1 cut(s) 41
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
SaqAI TTAA 4 cut(s) 323, 468, 561, 604
Sau3AI GATC 2 cut(s) 213, 546
Sau96I GGNCC 1 cut(s) 527
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 1 cut(s) 330
SfaNI GCATC 2 cut(s) 226, 413
SfuI TTCGAA 1 cut(s) 308
SinI GGWCC 1 cut(s) 527
Sse9I AATT 2 cut(s) 273, 296
SsiI CCGC 2 cut(s) 72, 131
StyD4I CCNGG 1 cut(s) 328
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 1 cut(s) 520
TaqI TCGA 3 cut(s) 17, 47, 308
TasI AATT 2 cut(s) 273, 296
Tru1I TTAA 4 cut(s) 323, 468, 561, 604
Tru9I TTAA 4 cut(s) 323, 468, 561, 604
TscAI CASTG 1 cut(s) 525
TseFI GTSAC 2 cut(s) 287, 476
Tsp45I GTSAC 2 cut(s) 287, 476
TspDTI ATGAA 1 cut(s) 407
TspRI CASTG 1 cut(s) 525
VpaK11BI GGWCC 1 cut(s) 527
XagI CCTNNNNNAGG 1 cut(s) 569
Zsp2I ATGCAT 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.