Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001589

Physical Location & Seq

Genomic Coordinates Reverse (-)

6287444 .. 6297628

Gene Structure 10185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG084600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCCATCAAAGGCGTTGATTTCAAGTGTGGAAACCCCCAACTCTCCAAAGTTTCGGATGCGGCACCGAAACAGATGCACATGCTCCTCAGTCTGGCCTATCTAACGGGTCTTCTACAGGGTGAGGATATTACTGTGGCAGCTGTAAGGGAAGTTAAAGAAGAAACAGGAATTGACGCCAAGTTTTCAGAGGTATTAGCATTCAGGCAAGCACACAAGTTATTTTTTGAGAAGTCGGATCTGTTTTTTGTGTGCATGATGCATCCTCTATCCTTTGACATCCAAAAGTATGATACTGCTGCAACACTGGAGCTTTCTCAAGCAGAACATAAGGAGCGGAAAGCAAGGGCCTTAGCTGCAGCTGCCATGGAGTTGGAAAGACTTCTCAGAAAGGAAGATTTTGGTAGAATGAAGCTGAGCATTCTGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

143

Amino Acids

16.14

Weight (kDa)

7.79

Isoelectric Point (pI)

34.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	37 - 86	1.7e-07	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31700 AT4G31700 AT5G10360 AT5G10360
fragaria_vesca	FvH4_1g20340 FvH4_5g36790 FvH4_5g36790
malus_domestica	MD08G1186900.v1.1 MD15G1372800.v1.1
prunus_persica	Prupe.1G521400_v2.0.a1 Prupe.1G521400_v2.0.a1 Prupe.6G192100_v2.0.a1
pyrus_communis	pycom08g16070 pycom15g33380
rosa_chinensis	RchiOBHm_Chr1g0378681 RchiOBHm_Chr2g0112471 RchiOBHm_Chr5g0001121 RchiOBHm_Chr5g0001131 RchiOBHm_Chr7g0242901
rosa_laevigata	RLG00000000869 RLG00000017983 RLG00000024778
rosa_multiflora	Rmu_sc0000556.1_g000006 Rmu_sc0001706.1_g000036 Rmu_sc0001758.1_g000027 Rmu_sc0004165.1_g000057
rosa_roxburghii	Rroxscaffold_2G00131400 Rroxscaffold_3G00222260 Rroxscaffold_4G00307670 Rroxscaffold_6G00413940
rosa_rugosa	Rorug02G0106700 Rorug02G0181100 Rorug07G0291700 Rorug07G0317600 Rorug07G0317700
rosa_samantha	Rh2DG241800 Rh5BG035200 Rh5CG009600 Rh6AG374700 Rh7AG084600 Rh7AG473400 Rh7BG443300 Rh7CG085600 Rh7CG490300 Rh7DG086700 Rh7DG458600
rosa_wichuraiana	Rw2G018140 Rw6G032660 Rw7G039080 Rw7G039370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	64
AccBSI	CCGCTC	1 cut(s)	337
AciI	CCGC	2 cut(s)	62, 337
AclWI	GGATC	1 cut(s)	246
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	5 cut(s)	143, 313, 356, 362, 415
AluI	AGCT	5 cut(s)	143, 313, 356, 362, 415
AlwI	GGATC	1 cut(s)	246
AoxI	GGCC	3 cut(s)	3, 96, 348
ApeKI	GCWGC	5 cut(s)	140, 299, 356, 359, 362
Asp700I	GAANNNNTTC	1 cut(s)	381
AspS9I	GGNCC	1 cut(s)	348
AsuHPI	GGTGA	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	104
BbvI	GCAGC	5 cut(s)	152, 286, 343, 349, 371
BccI	CCATC	1 cut(s)	14
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BfmI	CTRYAG	2 cut(s)	116, 357
BisI	GCNGC	6 cut(s)	63, 141, 300, 357, 360, 363
BlpI	GCTNAGC	1 cut(s)	416
BlsI	GCNGC	6 cut(s)	64, 142, 301, 358, 361, 364
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	1 cut(s)	66
BmsI	GCATC	4 cut(s)	49, 66, 249, 271
BpiI	GAAGAC	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	329
Bpu10I	CCTNAGC	1 cut(s)	352
Bpu1102I	GCTNAGC	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	3 cut(s)	64, 262, 279
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	4 cut(s)	103, 400, 407, 416
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	5 cut(s)	152, 286, 343, 349, 371
BshFI	GGCC	3 cut(s)	5, 98, 350
BshNI	GGYRCC	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmI	GAATGC	2 cut(s)	200, 420
BsnI	GGCC	3 cut(s)	5, 98, 350
Bsp143I	GATC	1 cut(s)	238
Bsp1720I	GCTNAGC	1 cut(s)	416
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	2 cut(s)	62, 337
BspANI	GGCC	3 cut(s)	5, 98, 350
BspCNI	CTCAG	4 cut(s)	102, 399, 408, 417
BspLI	GGNNCC	1 cut(s)	66
BspMAI	CTGCAG	1 cut(s)	361
BspPI	GGATC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	64
BsrBI	CCGCTC	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	1 cut(s)	238
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	136
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	5 cut(s)	89, 352, 386, 416, 425
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	3 cut(s)	64, 262, 279
BstKTI	GATC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 362
BstNSI	RCATGY	1 cut(s)	85
BstSFI	CTRYAG	2 cut(s)	116, 357
BstV1I	GCAGC	5 cut(s)	152, 286, 343, 349, 371
BstV2I	GAAGAC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	238
BstXI	CCANNNNNNTGG	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	5, 98, 350
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	3 cut(s)	64, 262, 279
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	348
CseI	GACGC	1 cut(s)	185
CviAII	CATG	3 cut(s)	82, 256, 367
CviJI	RGCY	8 cut(s)	5, 98, 143, 313, 350, 356, 362, 415
CviKI_1	RGCY	8 cut(s)	5, 98, 143, 313, 350, 356, 362, 415
DdeI	CTNAG	5 cut(s)	89, 352, 386, 416, 425
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	366
EcoO109I	RGGNCCY	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	366
EcoT22I	ATGCAT	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	3 cut(s)	85, 259, 370
FaiI	YATR	5 cut(s)	83, 257, 291, 330, 368
FatI	CATG	3 cut(s)	81, 255, 366
Fnu4HI	GCNGC	6 cut(s)	63, 141, 300, 357, 360, 363
FokI	GGATG	3 cut(s)	71, 249, 266
Fsp4HI	GCNGC	6 cut(s)	63, 141, 300, 357, 360, 363
GluI	GCNGC	6 cut(s)	63, 141, 300, 357, 360, 363
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	3 cut(s)	5, 98, 350
HgaI	GACGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	3 cut(s)	85, 259, 370
HphI	GGTGA	1 cut(s)	134
Hpy188I	TCNGA	5 cut(s)	58, 190, 238, 389, 426
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	5 cut(s)	79, 255, 262, 302, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 362
HpyF3I	CTNAG	5 cut(s)	89, 352, 386, 416, 425
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	3 cut(s)	85, 259, 370
Kzo9I	GATC	1 cut(s)	238
LmnI	GCTCC	3 cut(s)	90, 310, 334
LpnPI	CCDG	5 cut(s)	80, 104, 153, 190, 293
Lsp1109I	GCAGC	5 cut(s)	152, 286, 343, 349, 371
LweI	GCATC	4 cut(s)	49, 66, 249, 271
MalI	GATC	1 cut(s)	240
MbiI	CCGCTC	1 cut(s)	337
MboI	GATC	1 cut(s)	238
MboII	GAAGA	3 cut(s)	104, 173, 407
MflI	RGATCY	1 cut(s)	238
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	171
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	216, 354
MnlI	CCTC	4 cut(s)	98, 118, 184, 276
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	264
MroXI	GAANNNNTTC	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	156
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	143, 362
Mva1269I	GAATGC	2 cut(s)	200, 420
MwoI	GCNNNNNNNGC	2 cut(s)	356, 362
NcoI	CCATGG	1 cut(s)	366
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	3 cut(s)	85, 259, 370
NlaIV	GGNNCC	1 cut(s)	66
NsiI	ATGCAT	1 cut(s)	264
NspI	RCATGY	1 cut(s)	85
PctI	GAATGC	2 cut(s)	200, 420
PdmI	GAANNNNTTC	1 cut(s)	381
PkrI	GCNGC	6 cut(s)	64, 142, 301, 358, 361, 364
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	348
PstI	CTGCAG	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	238
PvuII	CAGCTG	2 cut(s)	143, 362
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	6 cut(s)	63, 141, 300, 357, 360, 363
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	1 cut(s)	348
SetI	ASST	6 cut(s)	145, 195, 315, 358, 364, 417
SfaNI	GCATC	4 cut(s)	49, 66, 249, 271
SfcI	CTRYAG	2 cut(s)	116, 357
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	2 cut(s)	62, 337
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	136
TasI	AATT	1 cut(s)	171
TauI	GCSGC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	312
TseI	GCWGC	5 cut(s)	140, 299, 356, 359, 362
TspDTI	ATGAA	1 cut(s)	425
TspRI	CASTG	1 cut(s)	312
XceI	RCATGY	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	381
Zsp2I	ATGCAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.