Rmu_sc0001706.1_g000036

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001706.1
OG0001589
Physical Location & Seq
Forward (+)
147687 .. 149026
1340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001706.1_g000036.1.cds

Sequence Viewer

Length: 498 bp
atggaatttattttcttggtcactggcaagtgcgatactgctccaacactggagctttctcgagcagatgaggagcagaaatcaagggccttagctacagctgccacggagttggaaagacttctcagaaaggaagattttggactcaggagttatgtgtttaaaattatgggaggttgtgacaagaaattgtttcctttgaagcaaagagtgttaaccccagggtgtgttctccttttgctccacgggggagcctcatgcttccaaggacatggaaggaggaatagtgagcgaagaaggaaatctgttcatggatgcattgttagtccagacctgtttgtgttgaacttggtcattgttaagaaaggtgacaatgaccttcctggactgactaatgttgaaaagccaacagtgagagttccaaagagggcttccaagatccacaagctatttaacctcaccagggacgatgatggtaggaagtatgtcaacacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

165

Amino Acids

18.54

Weight (kDa)

9.71

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 433
AcsI RAATTY 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 463
AgsI TTSAA 3 cut(s) 202, 346, 401
AjnI CCWGG 3 cut(s) 220, 382, 461
AjuI GAANNNNNNNTTGG 2 cut(s) 415, 447
AluBI AGCT 4 cut(s) 55, 95, 101, 448
AluI AGCT 4 cut(s) 55, 95, 101, 448
AlwI GGATC 1 cut(s) 433
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 87
AsuHPI GGTGA 2 cut(s) 380, 451
AvaI CYCGRG 1 cut(s) 60
BbvI GCAGC 1 cut(s) 88
BccI CCATC 1 cut(s) 467
BciT130I CCWGG 3 cut(s) 222, 384, 463
BfmI CTRYAG 1 cut(s) 96
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme1390I CCNGG 3 cut(s) 222, 384, 463
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 3 cut(s) 222, 384, 463
BmsI GCATC 1 cut(s) 305
BpmI CTGGAG 1 cut(s) 71
Bpu10I CCTNAGC 1 cut(s) 91
BsaJI CCNNGG 6 cut(s) 105, 220, 221, 244, 265, 462
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 463
Bse1I ACTGG 2 cut(s) 28, 54
BseBI CCWGG 3 cut(s) 222, 384, 463
BseDI CCNNGG 6 cut(s) 105, 220, 221, 244, 265, 462
BseGI GGATG 1 cut(s) 320
BseLI CCNNNNNNNGG 1 cut(s) 463
BseMII CTCAG 2 cut(s) 139, 160
BseNI ACTGG 2 cut(s) 28, 54
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 88
BshFI GGCC 1 cut(s) 89
BsiHKCI CYCGRG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 479
BslI CCNNNNNNNGG 1 cut(s) 463
BsmFI GGGAC 1 cut(s) 479
BsnI GGCC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 60
Bsp143I GATC 1 cut(s) 438
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 2 cut(s) 138, 159
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 1 cut(s) 433
BsrI ACTGG 2 cut(s) 28, 54
BssECI CCNNGG 6 cut(s) 105, 220, 221, 244, 265, 462
BssMI GATC 1 cut(s) 438
BssT1I CCWWGG 1 cut(s) 265
Bst2UI CCWGG 3 cut(s) 222, 384, 463
Bst4CI ACNGT 1 cut(s) 412
BstDEI CTNAG 3 cut(s) 91, 125, 146
BstDSI CCRYGG 2 cut(s) 105, 244
BstF5I GGATG 1 cut(s) 320
BstKTI GATC 1 cut(s) 441
BstMBI GATC 1 cut(s) 438
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 3 cut(s) 222, 384, 463
BstSCI CCNGG 3 cut(s) 220, 382, 461
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 88
BstX2I RGATCY 1 cut(s) 438
BstXI CCANNNNNNTGG 2 cut(s) 112, 272
BstYI RGATCY 1 cut(s) 438
BsuRI GGCC 1 cut(s) 89
BtgI CCRYGG 2 cut(s) 105, 244
BtsCI GGATG 1 cut(s) 320
BtsIMutI CAGTG 3 cut(s) 21, 47, 417
Cfr13I GGNCC 1 cut(s) 87
CviAII CATG 3 cut(s) 258, 272, 311
CviJI RGCY 8 cut(s) 55, 89, 95, 101, 254, 406, 431, 448
CviKI_1 RGCY 8 cut(s) 55, 89, 95, 101, 254, 406, 431, 448
DdeI CTNAG 3 cut(s) 91, 125, 146
DpnI GATC 1 cut(s) 440
DpnII GATC 1 cut(s) 438
DraI TTTAAA 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 265
Eco88I CYCGRG 1 cut(s) 60
EcoO109I RGGNCCY 1 cut(s) 87
EcoRII CCWGG 3 cut(s) 220, 382, 461
EcoT14I CCWWGG 1 cut(s) 265
EcoT22I ATGCAT 1 cut(s) 320
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 3 cut(s) 261, 275, 314
FaiI YATR 6 cut(s) 156, 170, 259, 273, 312, 486
FaqI GGGAC 1 cut(s) 479
FatI CATG 3 cut(s) 257, 271, 310
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 1 cut(s) 327
Fsp4HI GCNGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 71
HaeIII GGCC 1 cut(s) 89
Hin1II CATG 3 cut(s) 261, 275, 314
HincII GTYRAC 2 cut(s) 216, 490
HindII GTYRAC 2 cut(s) 216, 490
HinfI GANTC 1 cut(s) 144
HpaI GTTAAC 1 cut(s) 216
HphI GGTGA 2 cut(s) 380, 451
Hpy166II GTNNAC 2 cut(s) 216, 490
Hpy188I TCNGA 1 cut(s) 128
Hpy188III TCNNGA 3 cut(s) 60, 148, 329
Hpy8I GTNNAC 2 cut(s) 216, 490
HpyAV CCTTC 3 cut(s) 270, 291, 389
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4V TGCA 1 cut(s) 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 3 cut(s) 91, 125, 146
Hsp92II CATG 3 cut(s) 261, 275, 314
KspAI GTTAAC 1 cut(s) 216
Kzo9I GATC 1 cut(s) 438
LmnI GCTCC 5 cut(s) 46, 52, 73, 246, 251
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 1 cut(s) 305
MaeIII GTNAC 3 cut(s) 19, 179, 368
MalI GATC 1 cut(s) 440
MboI GATC 1 cut(s) 438
MboII GAAGA 2 cut(s) 146, 306
MflI RGATCY 1 cut(s) 438
MluCI AATT 3 cut(s) 5, 165, 188
MlyI GAGTC 1 cut(s) 138
MmeI TCCRAC 2 cut(s) 68, 93
MnlI CCTC 6 cut(s) 64, 167, 265, 273, 420, 467
Mph1103I ATGCAT 1 cut(s) 320
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 5 cut(s) 162, 215, 360, 453, 496
MspA1I CMGCKG 1 cut(s) 101
MspR9I CCNGG 3 cut(s) 222, 384, 463
MvaI CCWGG 3 cut(s) 222, 384, 463
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 1 cut(s) 438
NlaIII CATG 3 cut(s) 261, 275, 314
NlaIV GGNNCC 1 cut(s) 253
NmuCI GTSAC 3 cut(s) 19, 179, 368
NsiI ATGCAT 1 cut(s) 320
PaeR7I CTCGAG 1 cut(s) 60
PasI CCCWGGG 1 cut(s) 221
PdmI GAANNNNTTC 1 cut(s) 120
PfoI TCCNGGA 1 cut(s) 382
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
Psp6I CCWGG 3 cut(s) 220, 382, 461
PspGI CCWGG 3 cut(s) 220, 382, 461
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 1 cut(s) 87
PsuI RGATCY 1 cut(s) 438
PvuII CAGCTG 1 cut(s) 101
SaqAI TTAA 5 cut(s) 162, 215, 360, 453, 496
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 1 cut(s) 438
Sau96I GGNCC 1 cut(s) 87
SchI GAGTC 1 cut(s) 138
ScrFI CCNGG 3 cut(s) 222, 384, 463
SetI ASST 9 cut(s) 57, 97, 103, 178, 336, 370, 381, 450, 459
SfaNI GCATC 1 cut(s) 305
SfcI CTRYAG 1 cut(s) 96
Sfr274I CTCGAG 1 cut(s) 60
SlaI CTCGAG 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 3 cut(s) 5, 165, 188
StyD4I CCNGG 3 cut(s) 220, 382, 461
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 1 cut(s) 412
TaqI TCGA 1 cut(s) 61
TasI AATT 3 cut(s) 5, 165, 188
Tru1I TTAA 5 cut(s) 162, 215, 360, 453, 496
Tru9I TTAA 5 cut(s) 162, 215, 360, 453, 496
TscAI CASTG 3 cut(s) 28, 54, 417
TseFI GTSAC 3 cut(s) 19, 179, 368
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 3 cut(s) 19, 179, 368
TspDTI ATGAA 1 cut(s) 299
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 3 cut(s) 28, 54, 417
XapI RAATTY 1 cut(s) 5
XhoI CTCGAG 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 120
Zsp2I ATGCAT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.