MD15G1372800.v1.1

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0001589
Physical Location & Seq
Reverse (-)
45530543 .. 45532750
2208 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1372800.v1.1.491

Sequence Viewer

Length: 750 bp
ATGAAGTTCAACATCGCCAACCCCACCACTGGGTGCCAGAAGAAGCTCGAAATCGACGATGATCACAAACTGCGTGCCTTTTTTGACAAGAGAATCTCCCAGGAGGTCAGCGGAGATGCTCTTGGAGAGGAATTTAGGGGCTATGTTTTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGAGTGTTGACCCCTGGACGTGTTCGCCTCTTGCTCCACAGAGGAACTCCTTGCTTCCGTGGTTATGGAAGGAGAAATGGTGAGAGGAGGAGGAAGTCTGTGCGTGGATGCATTGTCAGCCCCGACCTCTCTGTTTTGAACTTGGTCATTGTGAAGAAGGGTGACAATGACCTTCCTGGTTTGACCGACACTGAGAAGCCTAGGATGAGAGGTCCCAAGAGGGCATCTAAGATCCGCAAGCTCTTTAACCTCTCAAAAGAAGATGATGTTCGCAAGTATGTCAACACATACCGTAGAACATTCACAAACAAAAAAGGTAAGGAGGTCAGCAAGGCCCCCAAGATCCAGAGACTGGTCACTCCATTGACCCTGCAAAGGAAGAGAGCTAGAATTGCAGACAAGAAGAAGAGGGTTGCAAAGGCCAAGTCTGAGGCTGCTGAGTACCAGAAGCTCCTTGCATCAAGATTGAAGGAGCAGAGGGATCGCCGAAGTGAGAGCCTGGCCAAGAAGAGGTCCAGGCTCTCTGCTGCTTCAAAGCCATCTATTGCGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

250

Amino Acids

28.36

Weight (kDa)

10.69

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6e PF01092 1 - 128 3.4e-53 Ribosomal protein S6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 33
AccB7I CCANNNNNTGG 1 cut(s) 547
AciI CCGC 3 cut(s) 111, 430, 743
AclWI GGATC 3 cut(s) 421, 532, 684
AcoI YGGCCR 1 cut(s) 696
AcsI RAATTY 1 cut(s) 131
AdeI CACNNNGTG 1 cut(s) 33
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 5 cut(s) 29, 30, 547, 570, 705
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 5 cut(s) 10, 151, 334, 664, 729
AjiI CACGTC 1 cut(s) 215
AjnI CCWGG 5 cut(s) 99, 208, 370, 693, 710
AluBI AGCT 4 cut(s) 46, 436, 581, 646
AluI AGCT 4 cut(s) 46, 436, 581, 646
Alw26I GTCTC 1 cut(s) 538
AlwI GGATC 3 cut(s) 421, 532, 684
AlwNI CAGNNNCTG 1 cut(s) 547
AoxI GGCC 3 cut(s) 528, 615, 696
ApeKI GCWGC 2 cut(s) 629, 722
ApoI RAATTY 1 cut(s) 131
ArsI GACNNNNNNTTYG 2 cut(s) 605, 637
AspA2I CCTAGG 1 cut(s) 395
AspS9I GGNCC 3 cut(s) 407, 529, 708
AsuHPI GGTGA 2 cut(s) 287, 368
AvaII GGWCC 2 cut(s) 407, 708
AvrII CCTAGG 1 cut(s) 395
BalI TGGCCA 1 cut(s) 698
BanI GGYRCC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 616, 709
BccI CCATC 1 cut(s) 742
BcgI CGANNNNNNTGC 2 cut(s) 659, 693
BciT130I CCWGG 5 cut(s) 101, 210, 372, 695, 712
BclI TGATCA 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 538
BfaI CTAG 2 cut(s) 396, 582
BisI GCNGC 3 cut(s) 630, 723, 744
BlnI CCTAGG 1 cut(s) 395
BlsI GCNGC 3 cut(s) 631, 724, 745
Bme1390I CCNGG 5 cut(s) 101, 210, 372, 695, 712
Bme18I GGWCC 2 cut(s) 407, 708
BmgBI CACGTC 1 cut(s) 215
BmgT120I GGNCC 3 cut(s) 407, 529, 708
BmiI GGNNCC 3 cut(s) 35, 409, 531
BmrFI CCNGG 5 cut(s) 101, 210, 372, 695, 712
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 4 cut(s) 106, 293, 428, 662
BmuI ACTGGG 1 cut(s) 39
BsaJI CCNNGG 4 cut(s) 99, 208, 253, 395
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 30, 547, 570, 705
Bse1I ACTGG 2 cut(s) 34, 552
BseBI CCWGG 5 cut(s) 101, 210, 372, 695, 712
BseDI CCNNGG 4 cut(s) 99, 208, 253, 395
BseGI GGATG 2 cut(s) 308, 405
BseLI CCNNNNNNNGG 5 cut(s) 29, 30, 547, 570, 705
BseMII CTCAG 3 cut(s) 378, 615, 624
BseNI ACTGG 2 cut(s) 34, 552
BseRI GAGGAG 2 cut(s) 295, 298
BseXI GCAGC 2 cut(s) 616, 709
BshFI GGCC 3 cut(s) 530, 617, 698
BshNI GGYRCC 1 cut(s) 33
BslFI GGGAC 1 cut(s) 393
BslI CCNNNNNNNGG 5 cut(s) 29, 30, 547, 570, 705
BsmAI GTCTC 1 cut(s) 538
BsmFI GGGAC 1 cut(s) 393
BsnI GGCC 3 cut(s) 530, 617, 698
Bsp143I GATC 5 cut(s) 61, 153, 426, 537, 676
BspACI CCGC 3 cut(s) 111, 430, 743
BspANI GGCC 3 cut(s) 530, 617, 698
BspCNI CTCAG 3 cut(s) 379, 616, 625
BspLI GGNNCC 3 cut(s) 35, 409, 531
BspPI GGATC 3 cut(s) 421, 532, 684
BspT107I GGYRCC 1 cut(s) 33
BsrI ACTGG 2 cut(s) 34, 552
BssECI CCNNGG 4 cut(s) 99, 208, 253, 395
BssMI GATC 5 cut(s) 61, 153, 426, 537, 676
BssT1I CCWWGG 1 cut(s) 395
Bst2UI CCWGG 5 cut(s) 101, 210, 372, 695, 712
Bst4CI ACNGT 1 cut(s) 488
Bst6I CTCTTC 3 cut(s) 569, 596, 698
BstC8I GCNNGC 2 cut(s) 75, 434
BstDEI CTNAG 4 cut(s) 387, 423, 624, 633
BstDSI CCRYGG 1 cut(s) 253
BstF5I GGATG 2 cut(s) 308, 405
BstKTI GATC 5 cut(s) 64, 156, 429, 540, 679
BstMAI GTCTC 1 cut(s) 538
BstMBI GATC 5 cut(s) 61, 153, 426, 537, 676
BstMWI GCNNNNNNNGC 2 cut(s) 312, 587
BstNI CCWGG 5 cut(s) 101, 210, 372, 695, 712
BstSCI CCNGG 5 cut(s) 99, 208, 370, 693, 710
BstV1I GCAGC 2 cut(s) 616, 709
BstX2I RGATCY 2 cut(s) 426, 537
BstYI RGATCY 2 cut(s) 426, 537
BsuRI GGCC 3 cut(s) 530, 617, 698
BtgI CCRYGG 1 cut(s) 253
BtrI CACGTC 1 cut(s) 215
BtsCI GGATG 2 cut(s) 308, 405
BtsIMutI CAGTG 2 cut(s) 27, 384
Cac8I GCNNGC 2 cut(s) 75, 434
CaiI CAGNNNCTG 1 cut(s) 547
Cfr13I GGNCC 3 cut(s) 407, 529, 708
Csp6I GTAC 1 cut(s) 637
CviAII CATG 2 cut(s) 157, 187
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 4 cut(s) 387, 423, 624, 633
DpnI GATC 5 cut(s) 63, 155, 428, 539, 678
DpnII GATC 5 cut(s) 61, 153, 426, 537, 676
DraIII CACNNNGTG 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 696
Eam1104I CTCTTC 3 cut(s) 569, 596, 698
EarI CTCTTC 3 cut(s) 569, 596, 698
Eco130I CCWWGG 1 cut(s) 395
Eco47I GGWCC 2 cut(s) 407, 708
EcoO109I RGGNCCY 2 cut(s) 407, 529
EcoRII CCWGG 5 cut(s) 99, 208, 370, 693, 710
EcoT14I CCWWGG 1 cut(s) 395
EcoT22I ATGCAT 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 395
FaeI CATG 2 cut(s) 160, 190
FaiI YATR 7 cut(s) 144, 158, 188, 261, 474, 484, 748
FaqI GGGAC 1 cut(s) 393
FatI CATG 2 cut(s) 156, 186
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 3 cut(s) 630, 723, 744
FokI GGATG 2 cut(s) 315, 412
Fsp4HI GCNGC 3 cut(s) 630, 723, 744
FspBI CTAG 2 cut(s) 396, 582
GluI GCNGC 3 cut(s) 630, 723, 744
HaeIII GGCC 3 cut(s) 530, 617, 698
Hin1II CATG 2 cut(s) 160, 190
HincII GTYRAC 2 cut(s) 204, 478
HindII GTYRAC 2 cut(s) 204, 478
HinfI GANTC 1 cut(s) 93
HphI GGTGA 2 cut(s) 287, 368
Hpy166II GTNNAC 2 cut(s) 204, 478
Hpy188I TCNGA 1 cut(s) 625
Hpy188III TCNNGA 3 cut(s) 151, 541, 657
Hpy8I GTNNAC 2 cut(s) 204, 478
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 4 cut(s) 258, 346, 377, 658
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 5 cut(s) 306, 568, 590, 611, 653
HpyF10VI GCNNNNNNNGC 2 cut(s) 312, 587
HpyF3I CTNAG 4 cut(s) 387, 423, 624, 633
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 2 cut(s) 160, 190
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 5 cut(s) 61, 153, 426, 537, 676
LmnI GCTCC 3 cut(s) 234, 651, 667
Lsp1109I GCAGC 2 cut(s) 616, 709
LweI GCATC 4 cut(s) 106, 293, 428, 662
MaeI CTAG 2 cut(s) 396, 582
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 3 cut(s) 167, 356, 550
MalI GATC 5 cut(s) 63, 155, 428, 539, 678
MboI GATC 5 cut(s) 61, 153, 426, 537, 676
MboII GAAGA 7 cut(s) 52, 361, 467, 586, 610, 613, 715
MflI RGATCY 2 cut(s) 426, 537
MlsI TGGCCA 1 cut(s) 698
MluCI AATT 2 cut(s) 131, 585
MluNI TGGCCA 1 cut(s) 698
Mox20I TGGCCA 1 cut(s) 698
Mph1103I ATGCAT 1 cut(s) 308
MscI TGGCCA 1 cut(s) 698
MseI TTAA 1 cut(s) 441
Msp20I TGGCCA 1 cut(s) 698
MspA1I CMGCKG 1 cut(s) 111
MspR9I CCNGG 5 cut(s) 101, 210, 372, 695, 712
MvaI CCWGG 5 cut(s) 101, 210, 372, 695, 712
MwoI GCNNNNNNNGC 2 cut(s) 312, 587
NdeII GATC 5 cut(s) 61, 153, 426, 537, 676
NlaIII CATG 2 cut(s) 160, 190
NlaIV GGNNCC 3 cut(s) 35, 409, 531
NmuCI GTSAC 3 cut(s) 167, 356, 550
NsiI ATGCAT 1 cut(s) 308
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 1 cut(s) 93
PflMI CCANNNNNTGG 1 cut(s) 547
PkrI GCNGC 3 cut(s) 631, 724, 745
PpuMI RGGWCCY 1 cut(s) 407
Psp5II RGGWCCY 1 cut(s) 407
Psp6I CCWGG 5 cut(s) 99, 208, 370, 693, 710
PspGI CCWGG 5 cut(s) 99, 208, 370, 693, 710
PspN4I GGNNCC 3 cut(s) 35, 409, 531
PspPI GGNCC 3 cut(s) 407, 529, 708
PspPPI RGGWCCY 1 cut(s) 407
PstNI CAGNNNCTG 1 cut(s) 547
PsuI RGATCY 2 cut(s) 426, 537
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 3 cut(s) 630, 723, 744
Sau3AI GATC 5 cut(s) 61, 153, 426, 537, 676
Sau96I GGNCC 3 cut(s) 407, 529, 708
ScrFI CCNGG 5 cut(s) 101, 210, 372, 695, 712
SfaNI GCATC 4 cut(s) 106, 293, 428, 662
SinI GGWCC 2 cut(s) 407, 708
Sse9I AATT 2 cut(s) 131, 585
SsiI CCGC 3 cut(s) 111, 430, 743
SspMI CTAG 2 cut(s) 396, 582
StyD4I CCNGG 5 cut(s) 99, 208, 370, 693, 710
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 1 cut(s) 488
TaiI ACGT 1 cut(s) 217
TaqI TCGA 2 cut(s) 48, 54
TaqII GACCGA 1 cut(s) 395
TasI AATT 2 cut(s) 131, 585
TauI GCSGC 1 cut(s) 746
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 2 cut(s) 34, 391
TseFI GTSAC 3 cut(s) 167, 356, 550
TseI GCWGC 2 cut(s) 629, 722
Tsp45I GTSAC 3 cut(s) 167, 356, 550
TspDTI ATGAA 2 cut(s) 17, 203
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 2 cut(s) 34, 391
Van91I CCANNNNNTGG 1 cut(s) 547
VpaK11BI GGWCC 2 cut(s) 407, 708
XapI RAATTY 1 cut(s) 131
XmaJI CCTAGG 1 cut(s) 395
XspI CTAG 2 cut(s) 396, 582
Zsp2I ATGCAT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.