Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001589

Physical Location & Seq

Genomic Coordinates Forward (+)

2434758 .. 2435822

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG035200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGTTTAGGTGCAATACTGCTGCAACACTGGAGCTTTCTCAAGCAGAACATGTGGAGCGGAAAGCAAGGGCCTTAGCTGCAGCTGCCACGGAGTTGGGAAGACTTCTCAGAAAGGAAGATTTTGGTAGAATGAAGCCGAGCATTATGGGACGAGAGATCAGTCAAGAAGTCAATGGTGATGCACAGATTGCAAGGACTCAGGAGTTGTGTTCAAAATTATGGGAGGCTGTGACAAGAAATTGTTTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009987 GO:0010154 GO:0015630 GO:0016020 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0030983 GO:0031974 GO:0031981 GO:0032135 GO:0032138 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990391 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03430 ko03460 map03430 map03460

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

83

Amino Acids

9.34

Weight (kDa)

8.61

Isoelectric Point (pI)

26.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31700 AT4G31700 AT5G10360 AT5G10360
fragaria_vesca	FvH4_1g20340 FvH4_5g36790 FvH4_5g36790
malus_domestica	MD08G1186900.v1.1 MD15G1372800.v1.1
prunus_persica	Prupe.1G521400_v2.0.a1 Prupe.1G521400_v2.0.a1 Prupe.6G192100_v2.0.a1
pyrus_communis	pycom08g16070 pycom15g33380
rosa_chinensis	RchiOBHm_Chr1g0378681 RchiOBHm_Chr2g0112471 RchiOBHm_Chr5g0001121 RchiOBHm_Chr5g0001131 RchiOBHm_Chr7g0242901
rosa_laevigata	RLG00000000869 RLG00000017983 RLG00000024778
rosa_multiflora	Rmu_sc0000556.1_g000006 Rmu_sc0001706.1_g000036 Rmu_sc0001758.1_g000027 Rmu_sc0004165.1_g000057
rosa_roxburghii	Rroxscaffold_2G00131400 Rroxscaffold_3G00222260 Rroxscaffold_4G00307670 Rroxscaffold_6G00413940
rosa_rugosa	Rorug02G0106700 Rorug02G0181100 Rorug07G0291700 Rorug07G0317600 Rorug07G0317700
rosa_samantha	Rh2DG241800 Rh5BG035200 Rh5CG009600 Rh6AG374700 Rh7AG084600 Rh7AG473400 Rh7BG443300 Rh7CG085600 Rh7CG490300 Rh7DG086700 Rh7DG458600
rosa_wichuraiana	Rw2G018140 Rw6G032660 Rw7G039080 Rw7G039370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	58
AciI	CCGC	1 cut(s)	58
AflIII	ACRYGT	1 cut(s)	49
AgsI	TTSAA	1 cut(s)	213
AluBI	AGCT	3 cut(s)	34, 77, 83
AluI	AGCT	3 cut(s)	34, 77, 83
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	4 cut(s)	20, 77, 80, 83
AspS9I	GGNCC	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	106
BbvI	GCAGC	4 cut(s)	7, 64, 70, 92
BfmI	CTRYAG	1 cut(s)	78
BisI	GCNGC	4 cut(s)	21, 78, 81, 84
BlsI	GCNGC	4 cut(s)	22, 79, 82, 85
BmgT120I	GGNCC	1 cut(s)	69
BmsI	GCATC	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	106
BpmI	CTGGAG	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	87
BseMII	CTCAG	2 cut(s)	121, 212
BseNI	ACTGG	1 cut(s)	33
BseXI	GCAGC	4 cut(s)	7, 64, 70, 92
BshFI	GGCC	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	156
BspACI	CCGC	1 cut(s)	58
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	2 cut(s)	120, 211
BspMAI	CTGCAG	1 cut(s)	82
BsrBI	CCGCTC	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstDEI	CTNAG	3 cut(s)	73, 107, 198
BstDSI	CCRYGG	1 cut(s)	87
BstKTI	GATC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 83, 188
BstNSI	RCATGY	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	78
BstV1I	GCAGC	4 cut(s)	7, 64, 70, 92
BstV2I	GAAGAC	1 cut(s)	106
BstXI	CCANNNNNNTGG	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	69
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	6 cut(s)	34, 71, 77, 83, 136, 227
CviKI_1	RGCY	6 cut(s)	34, 71, 77, 83, 136, 227
DdeI	CTNAG	3 cut(s)	73, 107, 198
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
EcoO109I	RGGNCCY	1 cut(s)	69
FaeI	CATG	1 cut(s)	53
FaiI	YATR	3 cut(s)	51, 146, 220
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	1 cut(s)	49
Fnu4HI	GCNGC	4 cut(s)	21, 78, 81, 84
Fsp4HI	GCNGC	4 cut(s)	21, 78, 81, 84
GluI	GCNGC	4 cut(s)	21, 78, 81, 84
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	53
HinfI	GANTC	1 cut(s)	196
HphI	GGTGA	1 cut(s)	188
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	2 cut(s)	164, 200
HpyCH4V	TGCA	5 cut(s)	12, 23, 80, 182, 191
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 83, 188
HpyF3I	CTNAG	3 cut(s)	73, 107, 198
Hsp92II	CATG	1 cut(s)	53
Kzo9I	GATC	1 cut(s)	156
LmnI	GCTCC	2 cut(s)	31, 55
LpnPI	CCDG	2 cut(s)	14, 185
Lsp1109I	GCAGC	4 cut(s)	7, 64, 70, 92
LweI	GCATC	1 cut(s)	169
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	1 cut(s)	158
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	1 cut(s)	156
MboII	GAAGA	2 cut(s)	111, 128
MluCI	AATT	2 cut(s)	215, 238
MlyI	GAGTC	1 cut(s)	190
MnlI	CCTC	1 cut(s)	217
MspA1I	CMGCKG	1 cut(s)	83
MwoI	GCNNNNNNNGC	3 cut(s)	77, 83, 188
NdeII	GATC	1 cut(s)	156
NlaIII	CATG	1 cut(s)	53
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	1 cut(s)	53
PciI	ACATGT	1 cut(s)	49
PkrI	GCNGC	4 cut(s)	22, 79, 82, 85
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PscI	ACATGT	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	69
PstI	CTGCAG	1 cut(s)	82
PvuII	CAGCTG	1 cut(s)	83
SatI	GCNGC	4 cut(s)	21, 78, 81, 84
Sau3AI	GATC	1 cut(s)	156
Sau96I	GGNCC	1 cut(s)	69
SchI	GAGTC	1 cut(s)	190
SetI	ASST	4 cut(s)	11, 36, 79, 85
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	2 cut(s)	215, 238
SsiI	CCGC	1 cut(s)	58
TasI	AATT	2 cut(s)	215, 238
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	4 cut(s)	20, 77, 80, 83
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	146
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	33
XceI	RCATGY	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.