pycom08g16070

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0001589
Physical Location & Seq
Reverse (-)
15960956 .. 15962822
1867 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g16070.1

Sequence Viewer

Length: 750 bp
ATGAAGTTTAACATCGCCAACCCCACCACTGGGTGCCAGAAGAAGCTCGAAATCGACGATGACCACAAACTGCGGGCCTTCTTTGACAAGAGAATCTCCCAGGAGGTTAGCGGAGATGCCCTTGGAGAGGAATTTAAGGGCTATGTTTTCAAGATCATGGGAGGTTGCGACAAGCAAGGTTTCCCCATGAAGCAGGGAGTGTTGACCCCTGGCCGTGTTCGCCTCTTGCTCCACAGAGGCACTCCTTGCTTCCGTGGTTATGGAAGGAGAAATGGTGAGAGGAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCCGACCTCTCTGTTTTGAACTTGGTGATTGTGAAAAAGGGTGACAATGACCTCCCTGGGTTGACTGACACTGAGAAACCTAGGATGAGAGGACCCAAGAGGGCATCTAAGATCCGTAAACTCTTCAATCTTTCAAAGGAGGATGATGTTCGCAAGTATGTCAACACATACCGTAGAACATTCACGAACAAGAAGGGCAAGGAAGTCAGCAAGGCTCCTAAGATCCAGAGATTGGTCACCCCGTTGACCTTGCAAAGGAAGAGAGCTAGAATTGCTTACAAGAAAAAGAGGGTTGCAAAGGCCAAGTCTGAGGCTGCTGAATACCAGAAACTCCTTGCATCAAGGTTGAAGGAGCAGAGGGATCGCCGAAGTGAAAGCTTAGCCAAGAAGAGGTCCAGGCTGTCCGCAGCTTCAAAGCCATCCATTGCAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

250

Amino Acids

28.38

Weight (kDa)

10.66

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6e PF01092 1 - 128 1.5e-53 Ribosomal protein S6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 33
AccB7I CCANNNNNTGG 1 cut(s) 547
AciI CCGC 3 cut(s) 73, 111, 720
AclWI GGATC 3 cut(s) 421, 532, 684
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 1 cut(s) 131
AdeI CACNNNGTG 1 cut(s) 33
AfiI CCNNNNNNNGG 6 cut(s) 29, 30, 127, 547, 570, 705
AgsI TTSAA 6 cut(s) 151, 334, 442, 450, 664, 729
AjnI CCWGG 4 cut(s) 99, 208, 370, 710
AluBI AGCT 4 cut(s) 46, 581, 693, 725
AluI AGCT 4 cut(s) 46, 581, 693, 725
AlwI GGATC 3 cut(s) 421, 532, 684
AoxI GGCC 3 cut(s) 75, 211, 615
ApeKI GCWGC 3 cut(s) 629, 722, 743
ApoI RAATTY 1 cut(s) 131
ArsI GACNNNNNNTTYG 2 cut(s) 605, 637
AspA2I CCTAGG 1 cut(s) 395
AspS9I GGNCC 3 cut(s) 75, 407, 708
AsuHPI GGTGA 4 cut(s) 287, 352, 368, 544
AvaII GGWCC 2 cut(s) 407, 708
AvrII CCTAGG 1 cut(s) 395
BanI GGYRCC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 616, 734
BccI CCATC 1 cut(s) 742
BceAI ACGGC 1 cut(s) 198
BcgI CGANNNNNNTGC 2 cut(s) 659, 693
BciT130I CCWGG 4 cut(s) 101, 210, 372, 712
BfaI CTAG 2 cut(s) 396, 582
BisI GCNGC 3 cut(s) 630, 723, 744
BlnI CCTAGG 1 cut(s) 395
BlpI GCTNAGC 1 cut(s) 694
BlsI GCNGC 3 cut(s) 631, 724, 745
Bme1390I CCNGG 4 cut(s) 101, 210, 372, 712
Bme18I GGWCC 2 cut(s) 407, 708
BmgT120I GGNCC 3 cut(s) 75, 407, 708
BmiI GGNNCC 3 cut(s) 35, 409, 531
BmrFI CCNGG 4 cut(s) 101, 210, 372, 712
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 3 cut(s) 106, 428, 662
BmuI ACTGGG 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 694
BsaJI CCNNGG 7 cut(s) 99, 121, 208, 253, 370, 371, 395
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
Bsc4I CCNNNNNNNGG 6 cut(s) 29, 30, 127, 547, 570, 705
Bse1I ACTGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 738
BseBI CCWGG 4 cut(s) 101, 210, 372, 712
BseDI CCNNGG 7 cut(s) 99, 121, 208, 253, 370, 371, 395
BseGI GGATG 3 cut(s) 405, 463, 734
BseLI CCNNNNNNNGG 6 cut(s) 29, 30, 127, 547, 570, 705
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 2 cut(s) 378, 615
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 2 cut(s) 295, 298
BseXI GCAGC 2 cut(s) 616, 734
BshFI GGCC 3 cut(s) 77, 213, 617
BshNI GGYRCC 1 cut(s) 33
BslI CCNNNNNNNGG 6 cut(s) 29, 30, 127, 547, 570, 705
BsnI GGCC 3 cut(s) 77, 213, 617
Bsp143I GATC 4 cut(s) 153, 426, 537, 676
Bsp1720I GCTNAGC 1 cut(s) 694
BspACI CCGC 3 cut(s) 73, 111, 720
BspANI GGCC 3 cut(s) 77, 213, 617
BspCNI CTCAG 2 cut(s) 379, 616
BspLI GGNNCC 3 cut(s) 35, 409, 531
BspPI GGATC 3 cut(s) 421, 532, 684
BspT107I GGYRCC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 738
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 7 cut(s) 99, 121, 208, 253, 370, 371, 395
BssMI GATC 4 cut(s) 153, 426, 537, 676
BssT1I CCWWGG 2 cut(s) 121, 395
Bst2UI CCWGG 4 cut(s) 101, 210, 372, 712
Bst4CI ACNGT 1 cut(s) 488
Bst6I CTCTTC 3 cut(s) 443, 569, 698
BstAPI GCANNNNNTGC 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 5 cut(s) 387, 423, 534, 624, 694
BstDSI CCRYGG 1 cut(s) 253
BstEII GGTNACC 1 cut(s) 550
BstENI CCTNNNNNAGG 2 cut(s) 125, 568
BstF5I GGATG 3 cut(s) 405, 463, 734
BstKTI GATC 4 cut(s) 156, 429, 540, 679
BstMBI GATC 4 cut(s) 153, 426, 537, 676
BstMWI GCNNNNNNNGC 4 cut(s) 219, 246, 312, 587
BstNI CCWGG 4 cut(s) 101, 210, 372, 712
BstPI GGTNACC 1 cut(s) 550
BstSCI CCNGG 4 cut(s) 99, 208, 370, 710
BstV1I GCAGC 2 cut(s) 616, 734
BstX2I RGATCY 2 cut(s) 426, 537
BstYI RGATCY 2 cut(s) 426, 537
BsuRI GGCC 3 cut(s) 77, 213, 617
BtgI CCRYGG 1 cut(s) 253
BtsCI GGATG 3 cut(s) 405, 463, 734
BtsIMutI CAGTG 2 cut(s) 27, 384
Cac8I GCNNGC 1 cut(s) 75
Cfr13I GGNCC 3 cut(s) 75, 407, 708
CviAII CATG 2 cut(s) 157, 187
DdeI CTNAG 5 cut(s) 387, 423, 534, 624, 694
DpnI GATC 4 cut(s) 155, 428, 539, 678
DpnII GATC 4 cut(s) 153, 426, 537, 676
DraIII CACNNNGTG 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 211
Eam1104I CTCTTC 3 cut(s) 443, 569, 698
EarI CTCTTC 3 cut(s) 443, 569, 698
Eco130I CCWWGG 2 cut(s) 121, 395
Eco47I GGWCC 2 cut(s) 407, 708
Eco91I GGTNACC 1 cut(s) 550
EcoNI CCTNNNNNAGG 2 cut(s) 125, 568
EcoO109I RGGNCCY 1 cut(s) 407
EcoO65I GGTNACC 1 cut(s) 550
EcoRII CCWGG 4 cut(s) 99, 208, 370, 710
EcoT14I CCWWGG 2 cut(s) 121, 395
ErhI CCWWGG 2 cut(s) 121, 395
FaeI CATG 2 cut(s) 160, 190
FaiI YATR 7 cut(s) 144, 158, 188, 261, 474, 484, 748
FatI CATG 2 cut(s) 156, 186
FauI CCCGC 1 cut(s) 66
Fnu4HI GCNGC 3 cut(s) 630, 723, 744
FokI GGATG 3 cut(s) 412, 470, 721
Fsp4HI GCNGC 3 cut(s) 630, 723, 744
FspBI CTAG 2 cut(s) 396, 582
GluI GCNGC 3 cut(s) 630, 723, 744
HaeIII GGCC 3 cut(s) 77, 213, 617
Hin1II CATG 2 cut(s) 160, 190
HincII GTYRAC 4 cut(s) 204, 378, 478, 561
HindII GTYRAC 4 cut(s) 204, 378, 478, 561
HindIII AAGCTT 1 cut(s) 691
HinfI GANTC 1 cut(s) 93
HphI GGTGA 4 cut(s) 287, 352, 368, 544
Hpy166II GTNNAC 5 cut(s) 204, 378, 434, 478, 561
Hpy188I TCNGA 1 cut(s) 625
Hpy188III TCNNGA 3 cut(s) 151, 499, 541
Hpy8I GTNNAC 5 cut(s) 204, 378, 434, 478, 561
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 4 cut(s) 88, 258, 502, 658
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4V TGCA 5 cut(s) 306, 568, 611, 653, 743
HpyF10VI GCNNNNNNNGC 4 cut(s) 219, 246, 312, 587
HpyF3I CTNAG 5 cut(s) 387, 423, 534, 624, 694
Hsp92II CATG 2 cut(s) 160, 190
Kzo9I GATC 4 cut(s) 153, 426, 537, 676
LmnI GCTCC 3 cut(s) 234, 535, 667
Lsp1109I GCAGC 2 cut(s) 616, 734
LweI GCATC 3 cut(s) 106, 428, 662
MaeI CTAG 2 cut(s) 396, 582
MaeIII GTNAC 2 cut(s) 356, 550
MalI GATC 4 cut(s) 155, 428, 539, 678
MboI GATC 4 cut(s) 153, 426, 537, 676
MboII GAAGA 4 cut(s) 52, 430, 586, 715
MflI RGATCY 2 cut(s) 426, 537
MluCI AATT 2 cut(s) 131, 585
MseI TTAA 2 cut(s) 9, 135
MspR9I CCNGG 4 cut(s) 101, 210, 372, 712
MvaI CCWGG 4 cut(s) 101, 210, 372, 712
MwoI GCNNNNNNNGC 4 cut(s) 219, 246, 312, 587
NdeII GATC 4 cut(s) 153, 426, 537, 676
NlaIII CATG 2 cut(s) 160, 190
NlaIV GGNNCC 3 cut(s) 35, 409, 531
NmuCI GTSAC 2 cut(s) 356, 550
PasI CCCWGGG 1 cut(s) 371
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 1 cut(s) 93
PflMI CCANNNNNTGG 1 cut(s) 547
PkrI GCNGC 3 cut(s) 631, 724, 745
PpuMI RGGWCCY 1 cut(s) 407
Psp5II RGGWCCY 1 cut(s) 407
Psp6I CCWGG 4 cut(s) 99, 208, 370, 710
PspEI GGTNACC 1 cut(s) 550
PspGI CCWGG 4 cut(s) 99, 208, 370, 710
PspN4I GGNNCC 3 cut(s) 35, 409, 531
PspPI GGNCC 3 cut(s) 75, 407, 708
PspPPI RGGWCCY 1 cut(s) 407
PsuI RGATCY 2 cut(s) 426, 537
SaqAI TTAA 2 cut(s) 9, 135
SatI GCNGC 3 cut(s) 630, 723, 744
Sau3AI GATC 4 cut(s) 153, 426, 537, 676
Sau96I GGNCC 3 cut(s) 75, 407, 708
ScrFI CCNGG 4 cut(s) 101, 210, 372, 712
SfaNI GCATC 3 cut(s) 106, 428, 662
SinI GGWCC 2 cut(s) 407, 708
Sse9I AATT 2 cut(s) 131, 585
SsiI CCGC 3 cut(s) 73, 111, 720
SspMI CTAG 2 cut(s) 396, 582
StyD4I CCNGG 4 cut(s) 99, 208, 370, 710
StyI CCWWGG 2 cut(s) 121, 395
TaaI ACNGT 1 cut(s) 488
TaqI TCGA 2 cut(s) 48, 54
TasI AATT 2 cut(s) 131, 585
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 2 cut(s) 9, 135
Tru9I TTAA 2 cut(s) 9, 135
TscAI CASTG 2 cut(s) 34, 391
TseFI GTSAC 2 cut(s) 356, 550
TseI GCWGC 3 cut(s) 629, 722, 743
Tsp45I GTSAC 2 cut(s) 356, 550
TspDTI ATGAA 2 cut(s) 17, 203
TspGWI ACGGA 2 cut(s) 242, 419
TspRI CASTG 2 cut(s) 34, 391
Van91I CCANNNNNTGG 1 cut(s) 547
VpaK11BI GGWCC 2 cut(s) 407, 708
XagI CCTNNNNNAGG 2 cut(s) 125, 568
XapI RAATTY 1 cut(s) 131
XmaJI CCTAGG 1 cut(s) 395
XspI CTAG 2 cut(s) 396, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.