Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001589

Physical Location & Seq

Genomic Coordinates Reverse (-)

6359891 .. 6375536

Gene Structure 15646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG085600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCCAGTGGAAACCCCCAAATCTCCAAAGTTTCTGATGCGGCACCGAAACAGATGCACATGGCTCCTCAGTCTTGCCTATCTAATGGGTCTTCTACAGGGTGAGGATATTACTGTGGCAGCTGTAAGGGAAGTTAAAGAAGAAACAGGAATTGACGCCGAGTTTTCAGAGGTATTAGCATTCAGGTGCGACACTGCTGCAACACTGGAGCTTTCTCAAGCAGAACATGAGGAGCGAAAAGCAAGGGCCTTAGCTGTAGCTGCCACAGAGTTGGAAAGACTTCTCAGAAAGGAAGATTTTGGTAGAATGAAGAAAGGTGACTATGACCTTCTTGGACTAACTGATGTTGAAAAGCCAACAGTGAGACGTCCAAAGAGGGCTTCCAAGATCCGCAAGCTATTTAACCTCACCAAGGACGATGATGTTAGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Ribosomal_S6e

Protein Analysis

144

Amino Acids

16.5

Weight (kDa)

8.9

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	30 - 74	3.1e-07	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31700 AT4G31700 AT5G10360 AT5G10360
fragaria_vesca	FvH4_1g20340 FvH4_5g36790 FvH4_5g36790
malus_domestica	MD08G1186900.v1.1 MD15G1372800.v1.1
prunus_persica	Prupe.1G521400_v2.0.a1 Prupe.1G521400_v2.0.a1 Prupe.6G192100_v2.0.a1
pyrus_communis	pycom08g16070 pycom15g33380
rosa_chinensis	RchiOBHm_Chr1g0378681 RchiOBHm_Chr2g0112471 RchiOBHm_Chr5g0001121 RchiOBHm_Chr5g0001131 RchiOBHm_Chr7g0242901
rosa_laevigata	RLG00000000869 RLG00000017983 RLG00000024778
rosa_multiflora	Rmu_sc0000556.1_g000006 Rmu_sc0001706.1_g000036 Rmu_sc0001758.1_g000027 Rmu_sc0004165.1_g000057
rosa_roxburghii	Rroxscaffold_2G00131400 Rroxscaffold_3G00222260 Rroxscaffold_4G00307670 Rroxscaffold_6G00413940
rosa_rugosa	Rorug02G0106700 Rorug02G0181100 Rorug07G0291700 Rorug07G0317600 Rorug07G0317700
rosa_samantha	Rh2DG241800 Rh5BG035200 Rh5CG009600 Rh6AG374700 Rh7AG084600 Rh7AG473400 Rh7BG443300 Rh7CG085600 Rh7CG490300 Rh7DG086700 Rh7DG458600
rosa_wichuraiana	Rw2G018140 Rw6G032660 Rw7G039080 Rw7G039370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	370
AccB1I	GGYRCC	1 cut(s)	42
AciI	CCGC	2 cut(s)	40, 391
AclWI	GGATC	1 cut(s)	382
AcyI	GRCGYC	2 cut(s)	156, 367
AfiI	CCNNNNNNNGG	1 cut(s)	412
AgsI	TTSAA	1 cut(s)	350
AjuI	GAANNNNNNNTTGG	2 cut(s)	364, 396
AluBI	AGCT	5 cut(s)	122, 211, 254, 260, 397
AluI	AGCT	5 cut(s)	122, 211, 254, 260, 397
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	1 cut(s)	382
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	3 cut(s)	119, 197, 260
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	246
AsuHPI	GGTGA	3 cut(s)	113, 329, 400
BanI	GGYRCC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	83
BbvI	GCAGC	3 cut(s)	131, 184, 247
BcgI	CGANNNNNNTGC	4 cut(s)	36, 70, 179, 213
BcoDI	GTCTC	1 cut(s)	358
BfmI	CTRYAG	2 cut(s)	95, 255
BisI	GCNGC	4 cut(s)	41, 120, 198, 261
BlsI	GCNGC	4 cut(s)	42, 121, 199, 262
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	2 cut(s)	44, 65
BmsI	GCATC	2 cut(s)	27, 44
BpiI	GAAGAC	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	227
Bpu10I	CCTNAGC	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	201
BsaHI	GRCGYC	2 cut(s)	156, 367
BsaJI	CCNNGG	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse1I	ACTGG	2 cut(s)	5, 210
BseDI	CCNNGG	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMII	CTCAG	2 cut(s)	82, 298
BseNI	ACTGG	2 cut(s)	5, 210
BseRI	GAGGAG	2 cut(s)	56, 245
BseXI	GCAGC	3 cut(s)	131, 184, 247
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	1 cut(s)	358
BsmBI	CGTCTC	1 cut(s)	358
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	248
Bsp143I	GATC	1 cut(s)	387
BspACI	CCGC	2 cut(s)	40, 391
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	2 cut(s)	81, 297
BspLI	GGNNCC	2 cut(s)	44, 65
BspPI	GGATC	1 cut(s)	382
BspT107I	GGYRCC	1 cut(s)	42
BsrI	ACTGG	2 cut(s)	5, 210
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	1 cut(s)	387
BssNI	GRCGYC	2 cut(s)	156, 367
BssT1I	CCWWGG	1 cut(s)	411
Bst4CI	ACNGT	2 cut(s)	115, 361
BstACI	GRCGYC	2 cut(s)	156, 367
BstC8I	GCNNGC	1 cut(s)	395
BstDEI	CTNAG	3 cut(s)	68, 250, 284
BstENI	CCTNNNNNAGG	1 cut(s)	410
BstKTI	GATC	1 cut(s)	390
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	1 cut(s)	387
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstSFI	CTRYAG	2 cut(s)	95, 255
BstV1I	GCAGC	3 cut(s)	131, 184, 247
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	387
BstXI	CCANNNNNNTGG	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	248
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	4 cut(s)	12, 192, 203, 366
Cac8I	GCNNGC	1 cut(s)	395
Cfr13I	GGNCC	1 cut(s)	246
CseI	GACGC	1 cut(s)	164
CviAII	CATG	2 cut(s)	60, 227
CviJI	RGCY	9 cut(s)	64, 122, 211, 248, 254, 260, 355, 380, 397
CviKI_1	RGCY	9 cut(s)	64, 122, 211, 248, 254, 260, 355, 380, 397
DdeI	CTNAG	3 cut(s)	68, 250, 284
DpnI	GATC	1 cut(s)	389
DpnII	GATC	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	411
EcoNI	CCTNNNNNAGG	1 cut(s)	410
EcoO109I	RGGNCCY	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
Esp3I	CGTCTC	1 cut(s)	358
FaeI	CATG	2 cut(s)	63, 230
FaiI	YATR	3 cut(s)	61, 228, 324
FatI	CATG	2 cut(s)	59, 226
Fnu4HI	GCNGC	4 cut(s)	41, 120, 198, 261
Fsp4HI	GCNGC	4 cut(s)	41, 120, 198, 261
GluI	GCNGC	4 cut(s)	41, 120, 198, 261
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	248
HgaI	GACGC	1 cut(s)	164
Hin1I	GRCGYC	2 cut(s)	156, 367
Hin1II	CATG	2 cut(s)	63, 230
HphI	GGTGA	3 cut(s)	113, 329, 400
Hpy188I	TCNGA	3 cut(s)	36, 169, 287
HpyAV	CCTTC	1 cut(s)	338
HpyCH4III	ACNGT	2 cut(s)	115, 361
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	2 cut(s)	57, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	3 cut(s)	68, 250, 284
HpySE526I	ACGT	1 cut(s)	367
Hsp92I	GRCGYC	2 cut(s)	156, 367
Hsp92II	CATG	2 cut(s)	63, 230
Kzo9I	GATC	1 cut(s)	387
LmnI	GCTCC	3 cut(s)	69, 208, 232
LpnPI	CCDG	5 cut(s)	18, 83, 132, 169, 191
Lsp1109I	GCAGC	3 cut(s)	131, 184, 247
LweI	GCATC	2 cut(s)	27, 44
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	1 cut(s)	389
MboI	GATC	1 cut(s)	387
MboII	GAAGA	4 cut(s)	83, 152, 305, 322
MflI	RGATCY	1 cut(s)	387
MluCI	AATT	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	6 cut(s)	77, 97, 163, 223, 369, 416
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	2 cut(s)	135, 402
MslI	CAYNNNNRTG	1 cut(s)	184
MspA1I	CMGCKG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	1 cut(s)	387
NlaIII	CATG	2 cut(s)	63, 230
NlaIV	GGNNCC	2 cut(s)	44, 65
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	317
PctI	GAATGC	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	279
PkrI	GCNGC	4 cut(s)	42, 121, 199, 262
PspN4I	GGNNCC	2 cut(s)	44, 65
PspPI	GGNCC	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	387
PvuII	CAGCTG	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	135, 402
SatI	GCNGC	4 cut(s)	41, 120, 198, 261
Sau3AI	GATC	1 cut(s)	387
Sau96I	GGNCC	1 cut(s)	246
SfaNI	GCATC	2 cut(s)	27, 44
SfcI	CTRYAG	2 cut(s)	95, 255
SmiMI	CAYNNNNRTG	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	2 cut(s)	40, 391
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	2 cut(s)	115, 361
TaiI	ACGT	1 cut(s)	370
TasI	AATT	1 cut(s)	150
TauI	GCSGC	1 cut(s)	43
Tru1I	TTAA	2 cut(s)	135, 402
Tru9I	TTAA	2 cut(s)	135, 402
TscAI	CASTG	4 cut(s)	12, 199, 210, 366
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	3 cut(s)	119, 197, 260
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	1 cut(s)	323
TspRI	CASTG	4 cut(s)	12, 199, 210, 366
XagI	CCTNNNNNAGG	1 cut(s)	410
XmnI	GAANNNNTTC	1 cut(s)	279
ZraI	GACGTC	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.