Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000556.1

Orthogroup ID

OG0001589

Physical Location & Seq

Genomic Coordinates Reverse (-)

56835 .. 57968

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000556.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgaataagcagttctggagatccggccacttagacctcatgggctctgtcatgagacatgacgattatgggaggcggctgggacaagcaagggttcccaatgaagcagggagtgttagccgtggtcacggaaggaggaatggagagaggaggagaaaatctgtccgtgggtgcattgtcagccctgatctttctgttctgaacttggttattgtgaagaagggtcacaatgatcttcctggtttggccgacactgagaagcctaggatgagaggtccaaagagggcatctaagatccgaaagctcttcaatctctcaaaggaggatgatgttcgaaagtatgtgaacacacacagtagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Ribosomal_S6e

Protein Analysis

120

Amino Acids

13.71

Weight (kDa)

11.24

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31700 AT4G31700 AT5G10360 AT5G10360
fragaria_vesca	FvH4_1g20340 FvH4_5g36790 FvH4_5g36790
malus_domestica	MD08G1186900.v1.1 MD15G1372800.v1.1
prunus_persica	Prupe.1G521400_v2.0.a1 Prupe.1G521400_v2.0.a1 Prupe.6G192100_v2.0.a1
pyrus_communis	pycom08g16070 pycom15g33380
rosa_chinensis	RchiOBHm_Chr1g0378681 RchiOBHm_Chr2g0112471 RchiOBHm_Chr5g0001121 RchiOBHm_Chr5g0001131 RchiOBHm_Chr7g0242901
rosa_laevigata	RLG00000000869 RLG00000017983 RLG00000024778
rosa_multiflora	Rmu_sc0000556.1_g000006 Rmu_sc0001706.1_g000036 Rmu_sc0001758.1_g000027 Rmu_sc0004165.1_g000057
rosa_roxburghii	Rroxscaffold_2G00131400 Rroxscaffold_3G00222260 Rroxscaffold_4G00307670 Rroxscaffold_6G00413940
rosa_rugosa	Rorug02G0106700 Rorug02G0181100 Rorug07G0291700 Rorug07G0317600 Rorug07G0317700
rosa_samantha	Rh2DG241800 Rh5BG035200 Rh5CG009600 Rh6AG374700 Rh7AG084600 Rh7AG473400 Rh7BG443300 Rh7CG085600 Rh7CG490300 Rh7DG086700 Rh7DG458600
rosa_wichuraiana	Rw2G018140 Rw6G032660 Rw7G039080 Rw7G039370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	2 cut(s)	15, 289
AcoI	YGGCCR	2 cut(s)	25, 246
AgsI	TTSAA	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	1 cut(s)	304
AluI	AGCT	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	2 cut(s)	15, 289
AoxI	GGCC	2 cut(s)	25, 246
AspA2I	CCTAGG	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	275
AsuII	TTCGAA	1 cut(s)	334
AvaII	GGWCC	1 cut(s)	275
AvrII	CCTAGG	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	47
BceAI	ACGGC	1 cut(s)	105
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	264
BisI	GCNGC	1 cut(s)	77
BlnI	CCTAGG	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	37
Bpu14I	TTCGAA	1 cut(s)	334
BsaJI	CCNNGG	3 cut(s)	121, 166, 263
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	3 cut(s)	121, 166, 263
BseGI	GGATG	2 cut(s)	273, 331
BseMII	CTCAG	1 cut(s)	246
BseRI	GAGGAG	2 cut(s)	163, 166
BseYI	CCCAGC	1 cut(s)	79
BshFI	GGCC	2 cut(s)	27, 248
BsiSI	CCGG	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	27, 248
Bsp119I	TTCGAA	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	4 cut(s)	20, 187, 232, 294
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	2 cut(s)	27, 248
BspCNI	CTCAG	1 cut(s)	247
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	96
BspPI	GGATC	2 cut(s)	15, 289
BspQI	GCTCTTC	1 cut(s)	311
BspT104I	TTCGAA	1 cut(s)	334
BssECI	CCNNGG	3 cut(s)	121, 166, 263
BssMI	GATC	4 cut(s)	20, 187, 232, 294
BssT1I	CCWWGG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	356
Bst6I	CTCTTC	1 cut(s)	311
BstBI	TTCGAA	1 cut(s)	334
BstDEI	CTNAG	3 cut(s)	31, 255, 291
BstDSI	CCRYGG	2 cut(s)	121, 166
BstF5I	GGATG	2 cut(s)	273, 331
BstKTI	GATC	4 cut(s)	23, 190, 235, 297
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	4 cut(s)	20, 187, 232, 294
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstX2I	RGATCY	2 cut(s)	20, 294
BstYI	RGATCY	2 cut(s)	20, 294
BsuRI	GGCC	2 cut(s)	27, 248
BtgI	CCRYGG	2 cut(s)	121, 166
BtsCI	GGATG	2 cut(s)	273, 331
BtsIMutI	CAGTG	1 cut(s)	252
CciI	TCATGA	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	275
CviAII	CATG	3 cut(s)	40, 52, 59
CviJI	RGCY	8 cut(s)	27, 45, 79, 120, 183, 248, 262, 304
CviKI_1	RGCY	8 cut(s)	27, 45, 79, 120, 183, 248, 262, 304
DdeI	CTNAG	3 cut(s)	31, 255, 291
DpnI	GATC	4 cut(s)	22, 189, 234, 296
DpnII	GATC	4 cut(s)	20, 187, 232, 294
EaeI	YGGCCR	2 cut(s)	25, 246
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco130I	CCWWGG	1 cut(s)	263
Eco24I	GRGCYC	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	263
EcoT38I	GRGCYC	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	263
FaeI	CATG	3 cut(s)	43, 55, 62
FaiI	YATR	5 cut(s)	41, 53, 60, 69, 342
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	3 cut(s)	39, 51, 58
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	2 cut(s)	280, 338
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	1 cut(s)	77
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	1 cut(s)	77
GsaI	CCCAGC	1 cut(s)	83
GsuI	CTGGAG	1 cut(s)	37
HaeIII	GGCC	2 cut(s)	27, 248
HapII	CCGG	1 cut(s)	24
Hin1II	CATG	3 cut(s)	43, 55, 62
HpaII	CCGG	1 cut(s)	24
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	2 cut(s)	201, 299
Hpy188III	TCNNGA	2 cut(s)	16, 52
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	2 cut(s)	126, 214
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4V	TGCA	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	3 cut(s)	31, 255, 291
Hsp92II	CATG	3 cut(s)	43, 55, 62
Kzo9I	GATC	4 cut(s)	20, 187, 232, 294
LguI	GCTCTTC	1 cut(s)	311
LpnPI	CCDG	6 cut(s)	37, 65, 93, 198, 225, 252
LweI	GCATC	1 cut(s)	296
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	2 cut(s)	125, 224
MalI	GATC	4 cut(s)	22, 189, 234, 296
MboI	GATC	4 cut(s)	20, 187, 232, 294
MboII	GAAGA	3 cut(s)	227, 229, 298
MflI	RGATCY	2 cut(s)	20, 294
MhlI	GDGCHC	1 cut(s)	47
MnlI	CCTC	8 cut(s)	47, 66, 129, 141, 144, 266, 276, 316
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	180
NdeII	GATC	4 cut(s)	20, 187, 232, 294
NlaIII	CATG	3 cut(s)	43, 55, 62
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	2 cut(s)	125, 224
NspV	TTCGAA	1 cut(s)	334
PagI	TCATGA	1 cut(s)	51
PciSI	GCTCTTC	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	275
PsuI	RGATCY	2 cut(s)	20, 294
SapI	GCTCTTC	1 cut(s)	311
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	4 cut(s)	20, 187, 232, 294
Sau96I	GGNCC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	3 cut(s)	39, 277, 306
SfaNI	GCATC	1 cut(s)	296
SfuI	TTCGAA	1 cut(s)	334
SinI	GGWCC	1 cut(s)	275
SsiI	CCGC	1 cut(s)	76
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	263
TaaI	ACNGT	1 cut(s)	356
TaqI	TCGA	1 cut(s)	334
TauI	GCSGC	1 cut(s)	79
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	2 cut(s)	125, 224
Tsp45I	GTSAC	2 cut(s)	125, 224
TspDTI	ATGAA	2 cut(s)	17, 117
TspGWI	ACGGA	2 cut(s)	144, 155
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	275
XmaJI	CCTAGG	1 cut(s)	263
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.