Rh7DG086700

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001589
Physical Location & Seq
Reverse (-)
7122094 .. 7123420
1327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG086700.1

Sequence Viewer

Length: 291 bp
ATGGAATTTATTTTCTTCGTCACTAGCAGGTATGATACTGCTGCAACACTGGAGCTTTCTCAAGCAGAACATAAGGAGCGGAAAGCAAGGGCCTTAGCTGCAGCTGCCATGGAATTGGAAAGACTTCTCAGAAAGGAAGATTTTGGTAGAATGAAGAAAGGTGACTGTGACCTTCCTGGACTGACTGATGTTGAAAAGCCAACAGTGAGAGGTCCAAAGAGGGCTTCCAAGATCCGCAAGCTATTTAACCTCACCAAGGATGATGATGTTAGGAAGTATGTCAACACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

96

Amino Acids

11.05

Weight (kDa)

9.51

Isoelectric Point (pI)

20.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 18
AccBSI CCGCTC 1 cut(s) 79
AciI CCGC 2 cut(s) 79, 235
AclWI GGATC 1 cut(s) 226
AcsI RAATTY 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 1 cut(s) 194
AjnI CCWGG 1 cut(s) 175
AjuI GAANNNNNNNTTGG 2 cut(s) 208, 240
AluBI AGCT 4 cut(s) 55, 98, 104, 241
AluI AGCT 4 cut(s) 55, 98, 104, 241
AlwI GGATC 1 cut(s) 226
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 4 cut(s) 41, 98, 101, 104
ApoI RAATTY 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 123
AspS9I GGNCC 2 cut(s) 90, 212
AsuHPI GGTGA 2 cut(s) 173, 244
AvaII GGWCC 1 cut(s) 212
BbvI GCAGC 4 cut(s) 28, 85, 91, 113
BciT130I CCWGG 1 cut(s) 177
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 18
BisI GCNGC 4 cut(s) 42, 99, 102, 105
BlsI GCNGC 4 cut(s) 43, 100, 103, 106
Bme1390I CCNGG 1 cut(s) 177
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 2 cut(s) 90, 212
BmrFI CCNGG 1 cut(s) 177
BpmI CTGGAG 1 cut(s) 71
Bpu10I CCTNAGC 1 cut(s) 94
BpuEI CTTGAG 1 cut(s) 45
BsaJI CCNNGG 2 cut(s) 108, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 108, 255
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMII CTCAG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 54
BseXI GCAGC 4 cut(s) 28, 85, 91, 113
BshFI GGCC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 256
BsnI GGCC 1 cut(s) 92
Bsp143I GATC 1 cut(s) 231
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 2 cut(s) 79, 235
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 1 cut(s) 141
BspMAI CTGCAG 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 18
BspPI GGATC 1 cut(s) 226
BsrBI CCGCTC 1 cut(s) 79
BsrI ACTGG 1 cut(s) 54
BssECI CCNNGG 2 cut(s) 108, 255
BssMI GATC 1 cut(s) 231
BssT1I CCWWGG 2 cut(s) 108, 255
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 2 cut(s) 167, 205
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 94, 128
BstDSI CCRYGG 1 cut(s) 108
BstENI CCTNNNNNAGG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 265
BstKTI GATC 1 cut(s) 234
BstMBI GATC 1 cut(s) 231
BstMWI GCNNNNNNNGC 2 cut(s) 98, 104
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 175
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 4 cut(s) 28, 85, 91, 113
BstX2I RGATCY 1 cut(s) 231
BstXI CCANNNNNNTGG 1 cut(s) 115
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 1 cut(s) 92
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 265
BtsIMutI CAGTG 2 cut(s) 47, 210
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 239
Cfr13I GGNCC 2 cut(s) 90, 212
CviAII CATG 1 cut(s) 109
CviJI RGCY 7 cut(s) 55, 92, 98, 104, 199, 224, 241
CviKI_1 RGCY 7 cut(s) 55, 92, 98, 104, 199, 224, 241
DdeI CTNAG 2 cut(s) 94, 128
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
Eco130I CCWWGG 2 cut(s) 108, 255
Eco47I GGWCC 1 cut(s) 212
EcoNI CCTNNNNNAGG 1 cut(s) 254
EcoO109I RGGNCCY 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 2 cut(s) 108, 255
ErhI CCWWGG 2 cut(s) 108, 255
FaeI CATG 1 cut(s) 112
FaiI YATR 4 cut(s) 33, 72, 110, 279
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 4 cut(s) 42, 99, 102, 105
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 4 cut(s) 42, 99, 102, 105
FspBI CTAG 1 cut(s) 24
GluI GCNGC 4 cut(s) 42, 99, 102, 105
GsuI CTGGAG 1 cut(s) 71
HaeIII GGCC 1 cut(s) 92
Hin1II CATG 1 cut(s) 112
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HphI GGTGA 2 cut(s) 173, 244
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 1 cut(s) 131
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 2 cut(s) 167, 205
HpyCH4V TGCA 2 cut(s) 44, 101
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 104
HpyF3I CTNAG 2 cut(s) 94, 128
Hsp92II CATG 1 cut(s) 112
Kzo9I GATC 1 cut(s) 231
LmnI GCTCC 2 cut(s) 52, 76
LpnPI CCDG 4 cut(s) 13, 35, 162, 189
Lsp1109I GCAGC 4 cut(s) 28, 85, 91, 113
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 3 cut(s) 19, 161, 167
MalI GATC 1 cut(s) 233
MbiI CCGCTC 1 cut(s) 79
MboI GATC 1 cut(s) 231
MboII GAAGA 3 cut(s) 7, 149, 166
MflI RGATCY 1 cut(s) 231
MluCI AATT 2 cut(s) 5, 113
MnlI CCTC 3 cut(s) 203, 213, 260
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 2 cut(s) 246, 289
MspA1I CMGCKG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 98, 104
NcoI CCATGG 1 cut(s) 108
NdeII GATC 1 cut(s) 231
NlaIII CATG 1 cut(s) 112
NmuCI GTSAC 3 cut(s) 19, 161, 167
PdmI GAANNNNTTC 1 cut(s) 123
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 4 cut(s) 43, 100, 103, 106
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspPI GGNCC 2 cut(s) 90, 212
PstI CTGCAG 1 cut(s) 103
PsuI RGATCY 1 cut(s) 231
PvuII CAGCTG 1 cut(s) 104
SaqAI TTAA 2 cut(s) 246, 289
SatI GCNGC 4 cut(s) 42, 99, 102, 105
Sau3AI GATC 1 cut(s) 231
Sau96I GGNCC 2 cut(s) 90, 212
ScrFI CCNGG 1 cut(s) 177
SetI ASST 9 cut(s) 32, 57, 100, 106, 163, 174, 214, 243, 252
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 2 cut(s) 5, 113
SsiI CCGC 2 cut(s) 79, 235
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 2 cut(s) 108, 255
TaaI ACNGT 2 cut(s) 167, 205
TasI AATT 2 cut(s) 5, 113
Tru1I TTAA 2 cut(s) 246, 289
Tru9I TTAA 2 cut(s) 246, 289
TscAI CASTG 2 cut(s) 54, 210
TseFI GTSAC 3 cut(s) 19, 161, 167
TseI GCWGC 4 cut(s) 41, 98, 101, 104
Tsp45I GTSAC 3 cut(s) 19, 161, 167
TspDTI ATGAA 1 cut(s) 167
TspRI CASTG 2 cut(s) 54, 210
VpaK11BI GGWCC 1 cut(s) 212
XagI CCTNNNNNAGG 1 cut(s) 254
XapI RAATTY 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.