Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005062

Physical Location & Seq

Genomic Coordinates Forward (+)

546513 .. 548988

Gene Structure 2476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015672

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGAGCAAACAATTCAGAGAATAGTATCTCTGAAAATCGGAATTTTGCAGCAGCAGTGGATTCGTGCTCATATTGAGTTCACAGTTGAACAATGGCCATGTATATCCGTGTTAAGCGTACGCTTGATCCTAGTCAGTACTGGGGAAGTACTGGAAGATTCAAAGACATTGGCAGATCAGAAGGTGGAAAATGATGGTGTTGTAGCACTGACTTTGAGAAAAGATGACAATGAGTTTGAAGAAGTGAACATTGTACGACCAGATGACTTCTACCAATCTCGTGATGCAGATGCAAGCAGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04066 ko04120 ko05200 ko05211 map04066 map04120 map05200 map05211

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

102

Amino Acids

11.62

Weight (kDa)

4.46

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57860 AT5G57860 AT5G57860 AT5G57860
fragaria_vesca	FvH4_1g00640 FvH4_1g00640
malus_domestica	MD02G1005200.v1.1 MD15G1149500.v1.1
prunus_persica	Prupe.7G265800_v2.0.a1 Prupe.7G265800_v2.0.a1 Prupe.7G265800_v2.0.a1 Prupe.7G265800_v2.0.a1 Prupe.7G265800_v2.0.a1 Prupe.7G265800_v2.0.a1 Prupe.7G265800_v2.0.a1 Prupe.7G265800_v2.0.a1 Prupe.7G265800_v2.0.a1
pyrus_communis	pycom02g00400 pycom15g13360
rosa_chinensis	RchiOBHm_Chr2g0085261
rosa_laevigata	RLG00000015672
rosa_multiflora	Rmu_sc0008510.1_g000006
rosa_roxburghii	Rroxscaffold_2G00155510
rosa_rugosa	Rorug01G0458600 Rorug01G0458700
rosa_samantha	Rh2AG007400 Rh2BG008000 Rh2CG008800 Rh2DG009100
rosa_wichuraiana	Rw2G000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	121
AcoI	YGGCCR	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	42
AfaI	GTAC	4 cut(s)	120, 139, 150, 255
AgsI	TTSAA	3 cut(s)	89, 162, 239
Alw21I	GWGCWC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	121
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	49, 52
ApoI	RAATTY	1 cut(s)	42
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
BalI	TGGCCA	1 cut(s)	97
BauI	CACGAG	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	61, 64
BccI	CCATC	1 cut(s)	188
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BfaI	CTAG	1 cut(s)	131
BisI	GCNGC	2 cut(s)	50, 53
BlsI	GCNGC	2 cut(s)	51, 54
BmcAI	AGTACT	2 cut(s)	139, 150
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	2 cut(s)	274, 280
BmuI	ACTGGG	1 cut(s)	150
Bse1I	ACTGG	2 cut(s)	145, 156
BseNI	ACTGG	2 cut(s)	145, 156
BseXI	GCAGC	2 cut(s)	61, 64
BshFI	GGCC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	70
BsiWI	CGTACG	1 cut(s)	118
BsnI	GGCC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	126, 175
BspANI	GGCC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	145, 156
BssMI	GATC	2 cut(s)	126, 175
BssSI	CACGAG	1 cut(s)	279
Bst2BI	CACGAG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	295
BstKTI	GATC	2 cut(s)	129, 178
BstMBI	GATC	2 cut(s)	126, 175
BstV1I	GCAGC	2 cut(s)	61, 64
BsuRI	GGCC	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	2 cut(s)	62, 206
Cac8I	GCNNGC	1 cut(s)	295
Csp6I	GTAC	4 cut(s)	119, 138, 149, 254
CviAII	CATG	1 cut(s)	99
CviJI	RGCY	1 cut(s)	97
CviKI_1	RGCY	1 cut(s)	97
CviQI	GTAC	4 cut(s)	119, 138, 149, 254
DpnI	GATC	2 cut(s)	128, 177
DpnII	GATC	2 cut(s)	126, 175
EaeI	YGGCCR	1 cut(s)	95
FaeI	CATG	1 cut(s)	102
FaiI	YATR	3 cut(s)	72, 100, 104
FatI	CATG	1 cut(s)	98
Fnu4HI	GCNGC	2 cut(s)	50, 53
Fsp4HI	GCNGC	2 cut(s)	50, 53
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	2 cut(s)	50, 53
HaeIII	GGCC	1 cut(s)	97
Hin1II	CATG	1 cut(s)	102
HinfI	GANTC	2 cut(s)	61, 158
Hpy166II	GTNNAC	2 cut(s)	81, 247
Hpy188I	TCNGA	4 cut(s)	18, 33, 41, 180
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	2 cut(s)	81, 247
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	3 cut(s)	49, 287, 293
Hsp92II	CATG	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	126, 175
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	3 cut(s)	126, 137, 273
Lsp1109I	GCAGC	2 cut(s)	61, 64
LweI	GCATC	2 cut(s)	274, 280
MaeI	CTAG	1 cut(s)	131
MalI	GATC	2 cut(s)	128, 177
MboI	GATC	2 cut(s)	126, 175
MboII	GAAGA	2 cut(s)	167, 251
MhlI	GDGCHC	1 cut(s)	70
MlsI	TGGCCA	1 cut(s)	97
MluCI	AATT	2 cut(s)	12, 42
MluNI	TGGCCA	1 cut(s)	97
Mox20I	TGGCCA	1 cut(s)	97
MscI	TGGCCA	1 cut(s)	97
MseI	TTAA	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	97
NdeII	GATC	2 cut(s)	126, 175
NlaIII	CATG	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	61, 158
Pfl23II	CGTACG	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	51, 54
PspLI	CGTACG	1 cut(s)	118
RsaI	GTAC	4 cut(s)	120, 139, 150, 255
RsaNI	GTAC	4 cut(s)	119, 138, 149, 254
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	2 cut(s)	50, 53
Sau3AI	GATC	2 cut(s)	126, 175
ScaI	AGTACT	2 cut(s)	139, 150
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	1 cut(s)	186
SfaNI	GCATC	2 cut(s)	274, 280
Sse9I	AATT	2 cut(s)	12, 42
SspMI	CTAG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	85
TasI	AATT	2 cut(s)	12, 42
TatI	WGTACW	2 cut(s)	137, 148
TfiI	GAWTC	2 cut(s)	61, 158
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	2 cut(s)	62, 213
TseI	GCWGC	2 cut(s)	49, 52
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	2 cut(s)	62, 213
XapI	RAATTY	1 cut(s)	42
XspI	CTAG	1 cut(s)	131
ZrmI	AGTACT	2 cut(s)	139, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.