RLG00000015773

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004627
Physical Location & Seq
Reverse (-)
1328106 .. 1333297
5192 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015773

Sequence Viewer

Length: 4272 bp
ATGGCGTTTGATCAAAATTCGGTTCCCCAAGATTTGAGGCCTTTAAATGTAGCTCGGAGTGTGGCTGAGGAGCCCCGCATTGCGTTGGCTACTACAGCTGGGTTTCTCCCCAACCTGGGTCAAGGTAATAGTCCTATGTATTACCCTGGGCCGGTTTCAGAGGCTGGGTATGTTAGTTTAGGGTATGGGAATCCGATCACGGGTGTGGCCACATGGGGCCCTCGGATGCCGGTGCCGGTGGGGCATCCGGGTGTGAGCCCTGCGATTGGTGTGGGAATCGGTTACAGTCCTAATTTGGGGAGTAGGGTTGTTGGGAGTGTGGTTGATCTTGTAAGCTCTCCTGCAGCAGCTGGAGCTGGGCCTTATGCGTGTAGTTCGAATGTGGGGAGTATGGTTGTTGGTAATGGTTTGGATCAGGGTGTTAGTGATTTGTCAGCTCGGTTTGGTTATGGTACCAATTTAGGCAGTAAGAGCAATTTTGGTGATCAGTCGGGTAGTGATTTGACATCTGGGTTTGCTTATAGTCCTAATATGGGAAATCGGAGTGATCAAGCCAGTGATGATGGTGGAGATGATTCTGTGTCAGGGAAGAAAATAAAGCTGCTGTGCAGTTTCGGTGGCAAGATTTTGCCCAGACCAAGTGATGGGATGTTGAGATATGTTGGAGGACAGACAAGGATTATTAGTGTTCGGAGAGATGTGAACTTCAACGAGCTAGTGCAGAAAATGGTGGATTCATATGGGCAATCTGTGGTTATTAAATATCAGCTCCCCGACGAGGATCTTGATGCACTGGTGTCAGTTTCATGTGCTGATGATCTTGACAATATGAAGGATGAGTATGAGAAGTTAGTGGAGAGATCTCCAGATGGATCAGCAAAGCTGAGGGTGTTTCTATTTTCTGCTTCAGAACTTGATACATCTGGTTCTGTACAGTTTGGGGATTTACATGATAGTGGGCAGAGATATGTTGATGCTGTGAATGGGATTACGGATGGGGTCGGTAGTGGTATGATGAGGAGAGAGAGTATAACAAGTGCAACTTCAACACAGAATTCTGATATTAGTGGAACTGATGCTGTTGATAGCTCAGCTCCTTGCCAGGGGGATGTAGCTGGAACTACGGGCCGGTTATCGCCTAAAGGGGACAAGTTATCCCCTAAAGGAGGTTCGACCAACTCTCAGGACACTGGTACAAGATTGGTTCTTCCAGATCCTAACCCTGCAGTTTATGAAGTTTCTACAGTTCCATCAGGCATTAATGTGGGTAAGACTGGCCCTTCCCAAACATCATCTTCTCTGCCTGAGGTAGATTTAGAAAGGACTGTGCCTGTTACAGTATCACAGCAACAACTGGGGTTGCAGCAACCTGGAATTGACATTCAGTCCACTTCTCCTTATCTGCAAGCTTATGTTAACCCTCGCCAGCTTCTTCCCCAGATGGGATTCCCAAATCCTCACCTGTTTGGGACTGCTGGTCCTGTCTATACCCAACAGCAATTCCGTGATAGTGGTGCTGGCATGACCTCGCATCACTTCATTCCTGCAGTGCATATTACAATGAGTCCTTCATCTTCTCATGTTAGTATGAGACCAAATGTGCTTCAGCCATTGATGCAACCCCAACAGACTCGATTAGATCATCATTATGTGGATGAAACTGCCTTTGGCCCCAGGGTTGTCCAGCTTCCAGCTGAACAAAGCTATAATACATATCAGGTGCAGGTCCCCTCACCAGCAGTAGGAAGTGCTTATGGCTGGCATCAGTTTCCACCGCCGGAACATATGATTTTCCATGATGGTTTGGTCTCCCACCAACAGGTAATGTATCCTGAGAAATCCAACAGGTTGGAAGACTGCTTTATGTGTCAGAAGGCTTTGCCTCATGCACATTCTGACCCGGTCCCAGTACAGGGTCAACGAGACGGAGGTGCAAGCCCTGTATCTGATTCAGATTCAAATTACCATAGTCTCCTTATGGAGGAAAACTGGAGATCTCAGCCAACAAACAGGGTTGTGGTAAGTGGATCATTGGGGGAAGGTAATGTTGGGCAGGGAGTTGAGATTAGACCCGGGGTCCAAGGCCAAGTAGATCCTCTTCTTGGAACTCCGCATTCAGATGCAACTGGGATAGTGCAGAATTCTGAGGGAAAATATGAGGAGGAGAGAAATGATCTTCAACAAGTTGATCATCCAATGATTTCAGCACCCCAGGGTGTCATGAGGAGGGCTGCCCCAGCACAGTATCAGGTTAAACAGGAAGGTTTGGTTAAAACTCCTGTTAATCAAGAGGTACCACTTACTGGAGGCCTGCTAGTTCAAACTCCGGAATGCCTGGTTCGTGAGTCTCCGCAAGCATATTCCAACAAATTTCCGAAAGAAGAAAATGTTTCTCAGATGATGGAAACCTTTAGGATAAGCCCGTCTGAGGTTTATGTTAATAATGAGCATGGTAAGTCACCTGTTGAAACGCCTAGAAGGGAAGACAGCTATGATCAGAAACCACCACAAGTTGCAGGAAGGGAGTTACCTCCAGATAATATCTTTGACAGGAATCAATTTATTCCAACTGAAGTACTAGCTTCTTACACTACTGGAGTCTCACAAATGCATAGTACACAGCCAGTAGAATTCGTTGAGGCACCACAACCATCTATGTGGGGAAATCCTGAATCTTATCAACAATCAAGAATTGGAGTCCCTGTGGATTCTCATGCATTTCATTATGGCAACCCTGTTGTTTCCACCCCTCTACCTAATAGAACTCAACCTCCTGCTGAATGGACAAATGAGAACTTGAGATTCCAGCCCAACATGGTACCTACTGATGTTGAAGTTGTTACTTCAAATGGTAACATCCCATCTTCTTTCTCTACACCTATGAGAATGGTTGATGTCCAGGACTCTTCAAACTCACTATTCAGCGATCAAGATCCTTGGAATTTGCGCCATGATACTCATCTTCCACCTCCTATACCTACCAAAATACAATTGAAAAAGGAACACTGTACAAATAGAGATCCCTTTGGTGGCAATGGTGCAGAACTAAATACAGAAATGCGATTGGAGGATGTAGGTCAACAGCCACTGGGCAATTTGAACAAGGATTTTAGTCCAGATCATGCCCAGTCTTCCAAAGGATCAGCGGAGGAACTGATCAAGCAAGGTAAAGCTGTTGCTGAGGGTGTAGCTGCCTCAGTTTTGCAGTCATCTCCGCCGTCAAATCCTGATTTTCATGACAAAAATGAGTCTGCATATGATTCCAACCAAGATGAAGGTCAAATCAGCACTTCAAGCATGCAGCGCACCGTTGAGGACGTCAAGACCCAATATCCAGATAAGCCAAATATGGGGTTTCCAGTATCAGATGGCATTGGCCGGCTGCAGATTATTAAGAATAGTGACCTTGAAGAGCTCAGAGAATTGGGCTCTGGAACCTTTGGTACCGTCTACCATGGAAAGTGGAGGGGCACTGATGTTGCAATCAAACGAATCAATGATAGGTGTTTTGCTGGGAAGCCTTCAGAACAGGAGCGGATGAGAAATGATTTCTGGAATGAGGCCATCAACCTCGCTGACTTGCACCACCCAAATGTGGTAGCTTTTTATGGCGTTGTACTTGATGGCCCGGGAGGTTCTGTGGCAACCGTAACAGAGTTTATGGTTAATGGTTCTCTTAGAAATGCCTTGCAGAAGAATGAGAAGAGTCTGGACAAGCGCAAACGTCTATTGATTGCAATGGATGTGGCATTTGGAATGGAGTACCTGCATGGAAAGAATATAGTGCACTTTGATTTGAAAAGTGACAACTTACTCGTCAATCTTCGAGATCCACACCGCCCAATTTGCAAGGTTGGTGATTTGGGCCTATCAAAGGTGAAATGTCAGACCCTGATCTCCGGTGGTGTGCGAGGGACACTTCCATGGATGGCACCAGAACTTTTGAATGGTAGTAGTAGCCTTGTCTCTGAGAAGGTTGATGTGTTTTCTTTTGGTATCGTACTGTGGGAGCTCCTCACTGGAGAAGAACCATATGGGGACTTACACTATGGTGCTATCATAGGCGGTATTGTGAGTAATACATTGCGGCCACCAATCCCTGAGTCTTGTGATCCAGAGTGGAAATTACTGATGGAGAGATGCTGGTCATCAGAGCCATCTGAGAGACTGAACTTCACTGAGATTGCAAACCAATTACGTGCTATGGCCGCAAAGATTCCTCCTAAAGTACAAGGCCAAACACAGCAGCAACCACCCTCAACGCAGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
PB1 Pkinase_Tyr

Protein Analysis

1424

Amino Acids

154.33

Weight (kDa)

5.16

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 218 - 301 7.7e-15 PB1 domain
Pkinase PF00069 1137 - 1397 8.3e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 1138 - 1399 8.1e-60 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 3321
Acc36I ACCTGC 2 cut(s) 1714, 3774
Acc65I GGTACC 4 cut(s) 452, 2293, 2818, 3443
AccB1I GGYRCC 7 cut(s) 232, 452, 2293, 2641, 2818, 3443, 3931
AccB7I CCANNNNNTGG 2 cut(s) 644, 2303
AccBSI CCGCTC 1 cut(s) 3535
AccI GTMKAC 1 cut(s) 3450
AccIII TCCGGA 1 cut(s) 2326
AcoI YGGCCR 4 cut(s) 207, 3376, 4088, 4206
AcsI RAATTY 6 cut(s) 16, 1054, 2140, 2369, 2630, 2941
AcuI CTGAAG 4 cut(s) 891, 1589, 2592, 3507
AcyI GRCGYC 1 cut(s) 3318
AhdI GACNNNNNGTC 3 cut(s) 1384, 1476, 2075
AjnI CCWGG 8 cut(s) 114, 145, 1101, 1369, 1673, 2211, 2334, 2898
AjuI GAANNNNNNNTTGG 4 cut(s) 1650, 1682, 2031, 2063
AleI CACNNNNGTG 2 cut(s) 203, 4050
AloI GAACNNNNNNTCC 2 cut(s) 2755, 2787
Alw21I GWGCWC 3 cut(s) 3417, 3789, 4014
Alw26I GTCTC 8 cut(s) 1585, 1813, 1917, 1976, 2352, 2605, 3970, 4159
Alw44I GTGCAC 1 cut(s) 3785
AlwNI CAGNNNCTG 4 cut(s) 164, 350, 3088, 3892
Ama87I CYCGRG 2 cut(s) 2072, 3628
Aor13HI TCCGGA 1 cut(s) 2326
ApaI GGGCCC 1 cut(s) 221
ApaLI GTGCAC 1 cut(s) 3785
ApoI RAATTY 6 cut(s) 16, 1054, 2140, 2369, 2630, 2941
AseI ATTAAT 1 cut(s) 1260
Asp718I GGTACC 4 cut(s) 452, 2293, 2818, 3443
AspLEI GCGC 3 cut(s) 2949, 3306, 3720
AsuC2I CCSGG 6 cut(s) 249, 1901, 2073, 2074, 3629, 3630
AsuHPI GGTGA 6 cut(s) 494, 1451, 1725, 2451, 3869, 3889
AsuII TTCGAA 1 cut(s) 377
AvaI CYCGRG 2 cut(s) 2072, 3628
AvaII GGWCC 4 cut(s) 1478, 1726, 1903, 2077
AxyI CCTNAGG 1 cut(s) 1305
BaeGI GKGCMC 3 cut(s) 221, 3473, 3789
BalI TGGCCA 1 cut(s) 209
BanI GGYRCC 7 cut(s) 232, 452, 2293, 2641, 2818, 3443, 3931
BanII GRGCYC 6 cut(s) 75, 221, 260, 3417, 3431, 4014
BarI GAAGNNNNNNTAC 2 cut(s) 2082, 2114
BbsI GAAGAC 3 cut(s) 1860, 2490, 3123
Bbv12I GWGCWC 3 cut(s) 3417, 3789, 4014
BbvCI CCTCAGC 3 cut(s) 66, 884, 3180
BbvI GCAGC 9 cut(s) 356, 359, 588, 1375, 2218, 3178, 3313, 3369, 4258
BceAI ACGGC 1 cut(s) 3202
BciT130I CCWGG 8 cut(s) 116, 147, 1103, 1371, 1675, 2213, 2336, 2900
BciVI GTATCC 1 cut(s) 1839
BclI TGATCA 6 cut(s) 10, 484, 547, 2188, 2494, 3156
BcnI CCSGG 6 cut(s) 249, 1901, 2073, 2074, 3629, 3630
BcoDI GTCTC 8 cut(s) 1585, 1813, 1917, 1976, 2352, 2605, 3970, 4159
BfaI CTAG 4 cut(s) 716, 2315, 2475, 2579
BfmI CTRYAG 6 cut(s) 93, 342, 1224, 1242, 1545, 3383
BfuAI ACCTGC 2 cut(s) 1714, 3774
BfuI GTATCC 1 cut(s) 1839
BglI GCCNNNNNGGC 1 cut(s) 241
BglII AGATCT 2 cut(s) 860, 1994
BlpI GCTNAGC 1 cut(s) 1090
BmcAI AGTACT 1 cut(s) 2577
Bme18I GGWCC 4 cut(s) 1478, 1726, 1903, 2077
BmeRI GACNNNNNGTC 3 cut(s) 1384, 1476, 2075
BmeT110I CYCGRG 2 cut(s) 2072, 3628
BmrI ACTGGG 5 cut(s) 1364, 1901, 2136, 3098, 3121
BmuI ACTGGG 5 cut(s) 1364, 1901, 2136, 3098, 3121
BpiI GAAGAC 3 cut(s) 1860, 2490, 3123
BpmI CTGGAG 7 cut(s) 372, 849, 2011, 2325, 2517, 2616, 4041
Bpu10I CCTNAGC 3 cut(s) 66, 884, 3180
Bpu1102I GCTNAGC 1 cut(s) 1090
Bpu14I TTCGAA 1 cut(s) 377
BpuEI CTTGAG 1 cut(s) 2818
BpuMI CCSGG 6 cut(s) 249, 1901, 2073, 2074, 3629, 3630
BsaAI YACGTR 1 cut(s) 4199
BsaBI GATNNNNATC 2 cut(s) 2931, 2958
BsaHI GRCGYC 1 cut(s) 3318
BsaI GGTCTC 2 cut(s) 1585, 1813
BsaWI WCCGGW 2 cut(s) 2326, 3899
BsaXI ACNNNNNCTCC 8 cut(s) 1012, 1042, 2688, 2718, 2755, 2785, 3624, 3654
Bse118I RCCGGY 5 cut(s) 151, 229, 235, 1128, 3378
Bse21I CCTNAGG 1 cut(s) 1305
Bse3DI GCAATG 4 cut(s) 78, 3040, 3744, 4082
Bse8I GATNNNNATC 2 cut(s) 2931, 2958
BseAI TCCGGA 1 cut(s) 2326
BseBI CCWGG 8 cut(s) 116, 147, 1103, 1371, 1675, 2213, 2336, 2900
BseJI GATNNNNATC 2 cut(s) 2931, 2958
BseMI GCAATG 4 cut(s) 78, 3040, 3744, 4082
BseRI GAGGAG 6 cut(s) 83, 1033, 2174, 2177, 2239, 4004
BseSI GKGCMC 3 cut(s) 221, 3473, 3789
BseXI GCAGC 9 cut(s) 356, 359, 588, 1375, 2218, 3178, 3313, 3369, 4258
BseYI CCCAGC 5 cut(s) 98, 164, 356, 2236, 3512
BsgI GTGCAG 5 cut(s) 628, 740, 1742, 2156, 3060
BshNI GGYRCC 7 cut(s) 232, 452, 2293, 2641, 2818, 3443, 3931
BsiHKAI GWGCWC 3 cut(s) 3417, 3789, 4014
BsiHKCI CYCGRG 2 cut(s) 2072, 3628
BslFI GGGAC 7 cut(s) 1160, 1483, 1712, 1889, 2684, 3928, 4052
BsmAI GTCTC 8 cut(s) 1585, 1813, 1917, 1976, 2352, 2605, 3970, 4159
BsmBI CGTCTC 1 cut(s) 1917
BsmFI GGGAC 7 cut(s) 1160, 1483, 1712, 1889, 2684, 3928, 4052
BsmI GAATGC 2 cut(s) 2113, 2336
Bso31I GGTCTC 2 cut(s) 1585, 1813
BsoBI CYCGRG 2 cut(s) 2072, 3628
Bsp119I TTCGAA 1 cut(s) 377
Bsp120I GGGCCC 1 cut(s) 217
Bsp1286I GDGCHC 8 cut(s) 75, 221, 260, 3417, 3431, 3473, 3789, 4014
Bsp13I TCCGGA 1 cut(s) 2326
Bsp1407I TGTACA 2 cut(s) 931, 3008
Bsp1720I GCTNAGC 1 cut(s) 1090
Bsp19I CCATGG 2 cut(s) 3454, 3923
BspEI TCCGGA 1 cut(s) 2326
BspHI TCATGA 2 cut(s) 2220, 3235
BspMAI CTGCAG 4 cut(s) 346, 1228, 1549, 3387
BspMI ACCTGC 2 cut(s) 1714, 3774
BspQI GCTCTTC 1 cut(s) 3405
BspT104I TTCGAA 1 cut(s) 377
BspT107I GGYRCC 7 cut(s) 232, 452, 2293, 2641, 2818, 3443, 3931
BspTNI GGTCTC 2 cut(s) 1585, 1813
BsrBI CCGCTC 1 cut(s) 3535
BsrDI GCAATG 4 cut(s) 78, 3040, 3744, 4082
BsrFI RCCGGY 5 cut(s) 151, 229, 235, 1128, 3378
BsrGI TGTACA 2 cut(s) 931, 3008
BssAI RCCGGY 5 cut(s) 151, 229, 235, 1128, 3378
BssNI GRCGYC 1 cut(s) 3318
BssT1I CCWWGG 4 cut(s) 2080, 2936, 3454, 3923
Bst2UI CCWGG 8 cut(s) 116, 147, 1103, 1371, 1675, 2213, 2336, 2900
Bst6I CTCTTC 4 cut(s) 2103, 2911, 3405, 3698
BstACI GRCGYC 1 cut(s) 3318
BstAUI TGTACA 2 cut(s) 931, 3008
BstBAI YACGTR 1 cut(s) 4199
BstBI TTCGAA 1 cut(s) 377
BstC8I GCNNGC 9 cut(s) 1407, 1427, 1519, 1760, 1936, 2312, 2355, 3299, 3380
BstDSI CCRYGG 2 cut(s) 3454, 3923
BstENI CCTNNNNNAGG 3 cut(s) 1164, 1979, 3872
BstHHI GCGC 3 cut(s) 2949, 3306, 3720
BstMAI GTCTC 8 cut(s) 1585, 1813, 1917, 1976, 2352, 2605, 3970, 4159
BstNI CCWGG 8 cut(s) 116, 147, 1103, 1371, 1675, 2213, 2336, 2900
BstNSI RCATGY 1 cut(s) 3301
BstSFI CTRYAG 6 cut(s) 93, 342, 1224, 1242, 1545, 3383
BstSLI GKGCMC 3 cut(s) 221, 3473, 3789
BstV1I GCAGC 9 cut(s) 356, 359, 588, 1375, 2218, 3178, 3313, 3369, 4258
BstV2I GAAGAC 3 cut(s) 1860, 2490, 3123
BstX2I RGATCY 8 cut(s) 781, 860, 1213, 1994, 2092, 2932, 3019, 3829
BstXI CCANNNNNNTGG 2 cut(s) 1849, 2658
BstYI RGATCY 8 cut(s) 781, 860, 1213, 1994, 2092, 2932, 3019, 3829
Bsu36I CCTNAGG 1 cut(s) 1305
BsuI GTATCC 1 cut(s) 1839
BtgI CCRYGG 2 cut(s) 3454, 3923
BtsI GCAGTG 1 cut(s) 1554
BtsIMutI CAGTG 9 cut(s) 562, 791, 1188, 1554, 3004, 3086, 3471, 4017, 4176
BveI ACCTGC 2 cut(s) 1714, 3774
Cac8I GCNNGC 9 cut(s) 1407, 1427, 1519, 1760, 1936, 2312, 2355, 3299, 3380
CaiI CAGNNNCTG 4 cut(s) 164, 350, 3088, 3892
CciI TCATGA 2 cut(s) 2220, 3235
CfoI GCGC 3 cut(s) 2949, 3306, 3720
Cfr10I RCCGGY 5 cut(s) 151, 229, 235, 1128, 3378
Cfr9I CCCGGG 2 cut(s) 2072, 3628
CspCI CAANNNNNGTGG 2 cut(s) 3726, 3761
DraI TTTAAA 1 cut(s) 45
DriI GACNNNNNGTC 3 cut(s) 1384, 1476, 2075
EaeI YGGCCR 4 cut(s) 207, 3376, 4088, 4206
Eam1104I CTCTTC 4 cut(s) 2103, 2911, 3405, 3698
Eam1105I GACNNNNNGTC 3 cut(s) 1384, 1476, 2075
EarI CTCTTC 4 cut(s) 2103, 2911, 3405, 3698
EciI GGCGGA 1 cut(s) 3204
Ecl136II GAGCTC 2 cut(s) 3415, 4012
Eco130I CCWWGG 4 cut(s) 2080, 2936, 3454, 3923
Eco147I AGGCCT 2 cut(s) 40, 2310
Eco24I GRGCYC 6 cut(s) 75, 221, 260, 3417, 3431, 4014
Eco31I GGTCTC 2 cut(s) 1585, 1813
Eco47I GGWCC 4 cut(s) 1478, 1726, 1903, 2077
Eco53kI GAGCTC 2 cut(s) 3415, 4012
Eco57I CTGAAG 4 cut(s) 891, 1589, 2592, 3507
Eco81I CCTNAGG 1 cut(s) 1305
Eco88I CYCGRG 2 cut(s) 2072, 3628
EcoICRI GAGCTC 2 cut(s) 3415, 4012
EcoNI CCTNNNNNAGG 3 cut(s) 1164, 1979, 3872
EcoO109I RGGNCCY 3 cut(s) 217, 218, 1726
EcoRI GAATTC 3 cut(s) 1054, 2140, 2630
EcoRII CCWGG 8 cut(s) 114, 145, 1101, 1369, 1673, 2211, 2334, 2898
EcoT14I CCWWGG 4 cut(s) 2080, 2936, 3454, 3923
EcoT22I ATGCAT 2 cut(s) 2613, 2719
EcoT38I GRGCYC 6 cut(s) 75, 221, 260, 3417, 3431, 4014
ErhI CCWWGG 4 cut(s) 2080, 2936, 3454, 3923
Esp3I CGTCTC 1 cut(s) 1917
FalI AAGNNNNNCTT 2 cut(s) 1027, 1059
FaqI GGGAC 7 cut(s) 1160, 1483, 1712, 1889, 2684, 3928, 4052
FauI CCCGC 1 cut(s) 83
FauNDI CATATG 4 cut(s) 739, 1785, 3256, 4033
FbaI TGATCA 6 cut(s) 10, 484, 547, 2188, 2494, 3156
FblI GTMKAC 1 cut(s) 3450
FriOI GRGCYC 6 cut(s) 75, 221, 260, 3417, 3431, 4014
FspBI CTAG 4 cut(s) 716, 2315, 2475, 2579
GlaI GCGC 3 cut(s) 2948, 3305, 3719
GsaI CCCAGC 5 cut(s) 102, 168, 360, 2240, 3516
GsuI CTGGAG 7 cut(s) 372, 849, 2011, 2325, 2517, 2616, 4041
HhaI GCGC 3 cut(s) 2949, 3306, 3720
Hin1I GRCGYC 1 cut(s) 3318
Hin6I GCGC 3 cut(s) 2947, 3304, 3718
HinP1I GCGC 3 cut(s) 2947, 3304, 3718
HincII GTYRAC 3 cut(s) 1417, 1919, 3080
HindII GTYRAC 3 cut(s) 1417, 1919, 3080
HindIII AAGCTT 1 cut(s) 1407
HpaI GTTAAC 1 cut(s) 1417
HphI GGTGA 6 cut(s) 494, 1451, 1725, 2451, 3869, 3889
Hpy166II GTNNAC 8 cut(s) 703, 1389, 1417, 1919, 2618, 3080, 3451, 3787
Hpy8I GTNNAC 8 cut(s) 703, 1389, 1417, 1919, 2618, 3080, 3451, 3787
Hpy99I CGWCG 1 cut(s) 779
HpyCH4IV ACGT 3 cut(s) 3318, 3724, 4198
HpySE526I ACGT 3 cut(s) 3318, 3724, 4198
Hsp92I GRCGYC 1 cut(s) 3318
HspAI GCGC 3 cut(s) 2947, 3304, 3718
Kpn2I TCCGGA 1 cut(s) 2326
KpnI GGTACC 4 cut(s) 456, 2297, 2822, 3447
KroI GCCGGC 1 cut(s) 3378
KroNI GCCGGC 1 cut(s) 3380
Ksp22I TGATCA 6 cut(s) 10, 484, 547, 2188, 2494, 3156
KspAI GTTAAC 1 cut(s) 1417
LguI GCTCTTC 1 cut(s) 3405
LmnI GCTCC 7 cut(s) 70, 353, 774, 1099, 3532, 4009, 4017
Lsp1109I GCAGC 9 cut(s) 356, 359, 588, 1375, 2218, 3178, 3313, 3369, 4258
MaeI CTAG 4 cut(s) 716, 2315, 2475, 2579
MaeII ACGT 3 cut(s) 3318, 3724, 4198
MaeIII GTNAC 9 cut(s) 281, 1333, 2457, 2526, 2839, 2852, 3401, 3649, 3803
MbiI CCGCTC 1 cut(s) 3535
MfeI CAATTG 1 cut(s) 2990
MflI RGATCY 8 cut(s) 781, 860, 1213, 1994, 2092, 2932, 3019, 3829
MhlI GDGCHC 8 cut(s) 75, 221, 260, 3417, 3431, 3473, 3789, 4014
MlsI TGGCCA 1 cut(s) 209
MluNI TGGCCA 1 cut(s) 209
MlyI GAGTC 9 cut(s) 1573, 1624, 2354, 2607, 2706, 2897, 3257, 3715, 4112
MmeI TCCRAC 6 cut(s) 643, 1830, 1866, 2388, 2591, 3288
Mox20I TGGCCA 1 cut(s) 209
Mph1103I ATGCAT 2 cut(s) 2613, 2719
MroI TCCGGA 1 cut(s) 2326
MroNI GCCGGC 1 cut(s) 3378
MscI TGGCCA 1 cut(s) 209
Msp20I TGGCCA 1 cut(s) 209
MspA1I CMGCKG 4 cut(s) 98, 350, 1694, 3146
MunI CAATTG 1 cut(s) 2990
Mva1269I GAATGC 2 cut(s) 2113, 2336
MvaI CCWGG 8 cut(s) 116, 147, 1103, 1371, 1675, 2213, 2336, 2900
NaeI GCCGGC 1 cut(s) 3380
NciI CCSGG 6 cut(s) 249, 1901, 2073, 2074, 3629, 3630
NcoI CCATGG 2 cut(s) 3454, 3923
NdeI CATATG 4 cut(s) 739, 1785, 3256, 4033
NgoMIV GCCGGC 1 cut(s) 3378
NmuCI GTSAC 3 cut(s) 2457, 3401, 3803
NsiI ATGCAT 2 cut(s) 2613, 2719
NspI RCATGY 1 cut(s) 3301
NspV TTCGAA 1 cut(s) 377
OliI CACNNNNGTG 2 cut(s) 203, 4050
PaeI GCATGC 1 cut(s) 3301
PagI TCATGA 2 cut(s) 2220, 3235
PasI CCCWGGG 3 cut(s) 146, 1674, 2212
PceI AGGCCT 2 cut(s) 40, 2310
PciSI GCTCTTC 1 cut(s) 3405
PctI GAATGC 2 cut(s) 2113, 2336
PdiI GCCGGC 1 cut(s) 3380
PflFI GACNNNGTC 1 cut(s) 1901
PflMI CCANNNNNTGG 2 cut(s) 644, 2303
PfoI TCCNGGA 1 cut(s) 2898
PleI GAGTC 9 cut(s) 1572, 1624, 2353, 2606, 2705, 2897, 3256, 3714, 4111
PpsI GAGTC 9 cut(s) 1572, 1624, 2353, 2606, 2705, 2897, 3256, 3714, 4111
Ppu21I YACGTR 1 cut(s) 4199
PpuMI RGGWCCY 1 cut(s) 1726
PshBI ATTAAT 1 cut(s) 1260
Psp124BI GAGCTC 2 cut(s) 3417, 4014
Psp5II RGGWCCY 1 cut(s) 1726
Psp6I CCWGG 8 cut(s) 114, 145, 1101, 1369, 1673, 2211, 2334, 2898
PspFI CCCAGC 5 cut(s) 98, 164, 356, 2236, 3512
PspGI CCWGG 8 cut(s) 114, 145, 1101, 1369, 1673, 2211, 2334, 2898
PspOMI GGGCCC 1 cut(s) 217
PspPPI RGGWCCY 1 cut(s) 1726
PsrI GAACNNNNNNTAC 2 cut(s) 3427, 3459
PstI CTGCAG 4 cut(s) 346, 1228, 1549, 3387
PstNI CAGNNNCTG 4 cut(s) 164, 350, 3088, 3892
PsuI RGATCY 8 cut(s) 781, 860, 1213, 1994, 2092, 2932, 3019, 3829
PsyI GACNNNGTC 1 cut(s) 1901
PvuII CAGCTG 3 cut(s) 98, 350, 1694
SacI GAGCTC 2 cut(s) 3417, 4014
SapI GCTCTTC 1 cut(s) 3405
ScaI AGTACT 1 cut(s) 2577
SchI GAGTC 9 cut(s) 1573, 1624, 2354, 2607, 2706, 2897, 3257, 3715, 4112
SduI GDGCHC 8 cut(s) 75, 221, 260, 3417, 3431, 3473, 3789, 4014
SfcI CTRYAG 6 cut(s) 93, 342, 1224, 1242, 1545, 3383
SfuI TTCGAA 1 cut(s) 377
SinI GGWCC 4 cut(s) 1478, 1726, 1903, 2077
SmaI CCCGGG 2 cut(s) 2074, 3630
SmlI CTYRAG 1 cut(s) 2797
SmoI CTYRAG 1 cut(s) 2797
SphI GCATGC 1 cut(s) 3301
SseBI AGGCCT 2 cut(s) 40, 2310
SspMI CTAG 4 cut(s) 716, 2315, 2475, 2579
SstI GAGCTC 2 cut(s) 3417, 4014
StuI AGGCCT 2 cut(s) 40, 2310
StyI CCWWGG 4 cut(s) 2080, 2936, 3454, 3923
TaiI ACGT 3 cut(s) 3321, 3727, 4201
TaqI TCGA 4 cut(s) 377, 1172, 1633, 3826
TatI WGTACW 7 cut(s) 931, 1909, 2575, 2615, 3008, 3616, 4228
TauI GCSGC 2 cut(s) 4090, 4211
TscAI CASTG 9 cut(s) 562, 798, 1195, 1554, 3011, 3093, 3478, 4024, 4183
TseFI GTSAC 3 cut(s) 2457, 3401, 3803
Tsp45I GTSAC 3 cut(s) 2457, 3401, 3803
TspGWI ACGGA 3 cut(s) 1007, 1493, 1941
TspMI CCCGGG 2 cut(s) 2072, 3628
TspRI CASTG 9 cut(s) 562, 798, 1195, 1554, 3011, 3093, 3478, 4024, 4183
Tth111I GACNNNGTC 1 cut(s) 1901
Van91I CCANNNNNTGG 2 cut(s) 644, 2303
VneI GTGCAC 1 cut(s) 3785
VpaK11BI GGWCC 4 cut(s) 1478, 1726, 1903, 2077
VspI ATTAAT 1 cut(s) 1260
XagI CCTNNNNNAGG 3 cut(s) 1164, 1979, 3872
XapI RAATTY 6 cut(s) 16, 1054, 2140, 2369, 2630, 2941
XceI RCATGY 1 cut(s) 3301
XmaI CCCGGG 2 cut(s) 2072, 3628
XmiI GTMKAC 1 cut(s) 3450
XspI CTAG 4 cut(s) 716, 2315, 2475, 2579
ZraI GACGTC 1 cut(s) 3319
ZrmI AGTACT 1 cut(s) 2577
Zsp2I ATGCAT 2 cut(s) 2613, 2719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.