Rorug01G0468400

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004627
Physical Location & Seq
Forward (+)
56091698 .. 56092639
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0468400.1

Sequence Viewer

Length: 474 bp
ATGGACCTCACACCACCGGACCTAAACCCAGCCAAAAGGTCGAGGCCAAACAGCCCCGAGCTACCAGATTATGCAATTGATATCATGCGCCATGTAGATATCAATGAACGAAGACTCTATTGCAAAAGGGCAGAGGAGATCAAAAATAGGTGGCTGGAAGGGATGGGGAAAATTGCTTCTTCTTATCCAAAGGAAGTCTTACACAGTCGGCCAAAATTTGATCCTTCAAAACCTTTGCCAAAGGGATATGCATGGACTTCTTACCGCCCTAAGAGTGACCATAAAGCTTTTGCTGTTAAGATGCATTGCATTGGTTGCGGCCTGGGTTTGGATCACTGGCCTGATGACTGCCCAGAAAAGGGTACTGAAGAGTACGAGAGGAATTTCGCCTTACTTCTTGAGCCTAATTCTGATTCTGATGATGATGAGACCGAGACCGAGACCAAGACCAAGACTGAGAGTGTGACCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
PB1 Pkinase_Tyr

Protein Analysis

157

Amino Acids

18.03

Weight (kDa)

5.58

Isoelectric Point (pI)

60.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 265, 318
AclWI GGATC 2 cut(s) 215, 339
AcoI YGGCCR 1 cut(s) 209
AcsI RAATTY 2 cut(s) 215, 382
AcuI CTGAAG 1 cut(s) 387
AfaI GTAC 2 cut(s) 364, 374
AfiI CCNNNNNNNGG 3 cut(s) 328, 358, 359
AgsI TTSAA 1 cut(s) 228
AjnI CCWGG 1 cut(s) 321
AluBI AGCT 2 cut(s) 61, 287
AluI AGCT 2 cut(s) 61, 287
Alw26I GTCTC 3 cut(s) 422, 428, 434
AlwI GGATC 2 cut(s) 215, 339
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 4 cut(s) 44, 209, 319, 338
ApoI RAATTY 2 cut(s) 215, 382
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 2 cut(s) 4, 19
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 2 cut(s) 4, 19
BbsI GAAGAC 1 cut(s) 118
BccI CCATC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 323
BcoDI GTCTC 3 cut(s) 422, 428, 434
BisI GCNGC 1 cut(s) 319
BlsI GCNGC 1 cut(s) 320
Bme1390I CCNGG 1 cut(s) 323
Bme18I GGWCC 2 cut(s) 4, 19
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 2 cut(s) 4, 19
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 419
BsaI GGTCTC 3 cut(s) 422, 428, 434
BsaJI CCNNGG 1 cut(s) 322
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 3 cut(s) 328, 358, 359
Bse1I ACTGG 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 323
BseDI CCNNGG 1 cut(s) 322
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 3 cut(s) 328, 358, 359
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 1 cut(s) 341
BseRI GAGGAG 1 cut(s) 149
BseYI CCCAGC 1 cut(s) 28
BshFI GGCC 4 cut(s) 46, 211, 321, 340
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 17
BslI CCNNNNNNNGG 3 cut(s) 328, 358, 359
BsmAI GTCTC 3 cut(s) 422, 428, 434
BsnI GGCC 4 cut(s) 46, 211, 321, 340
Bso31I GGTCTC 3 cut(s) 422, 428, 434
BsoBI CYCGRG 1 cut(s) 56
Bsp143I GATC 3 cut(s) 138, 220, 331
BspACI CCGC 2 cut(s) 265, 318
BspANI GGCC 4 cut(s) 46, 211, 321, 340
BspCNI CTCAG 1 cut(s) 448
BspPI GGATC 2 cut(s) 215, 339
BspTNI GGTCTC 3 cut(s) 422, 428, 434
BsrDI GCAATG 1 cut(s) 304
BsrI ACTGG 1 cut(s) 341
BssECI CCNNGG 1 cut(s) 322
BssMI GATC 3 cut(s) 138, 220, 331
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 2 cut(s) 206, 469
Bst6I CTCTTC 1 cut(s) 363
BstAPI GCANNNNNTGC 1 cut(s) 315
BstDEI CTNAG 2 cut(s) 270, 456
BstF5I GGATG 1 cut(s) 168
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 3 cut(s) 141, 223, 334
BstMAI GTCTC 3 cut(s) 422, 428, 434
BstMBI GATC 3 cut(s) 138, 220, 331
BstMWI GCNNNNNNNGC 1 cut(s) 315
BstNI CCWGG 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 321
BstV2I GAAGAC 1 cut(s) 118
BsuRI GGCC 4 cut(s) 46, 211, 321, 340
BtsCI GGATG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 334
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 4, 19
Csp6I GTAC 2 cut(s) 363, 373
CviAII CATG 3 cut(s) 85, 92, 252
CviQI GTAC 2 cut(s) 363, 373
DdeI CTNAG 2 cut(s) 270, 456
DpnI GATC 3 cut(s) 140, 222, 333
DpnII GATC 3 cut(s) 138, 220, 331
EaeI YGGCCR 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco31I GGTCTC 3 cut(s) 422, 428, 434
Eco32I GATATC 2 cut(s) 82, 100
Eco47I GGWCC 2 cut(s) 4, 19
Eco57I CTGAAG 1 cut(s) 387
Eco88I CYCGRG 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 321
EcoRV GATATC 2 cut(s) 82, 100
EcoT22I ATGCAT 2 cut(s) 253, 306
FaeI CATG 3 cut(s) 88, 95, 255
FaiI YATR 6 cut(s) 72, 86, 93, 249, 253, 282
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 3 cut(s) 84, 91, 251
Fnu4HI GCNGC 1 cut(s) 319
FokI GGATG 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 319
GlaI GCGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 319
GsaI CCCAGC 1 cut(s) 32
HaeIII GGCC 4 cut(s) 46, 211, 321, 340
HapII CCGG 1 cut(s) 17
HhaI GCGC 1 cut(s) 90
Hin1II CATG 3 cut(s) 88, 95, 255
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 2 cut(s) 114, 413
HpaII CCGG 1 cut(s) 17
Hpy188I TCNGA 2 cut(s) 412, 418
Hpy188III TCNNGA 1 cut(s) 398
HpyAV CCTTC 2 cut(s) 152, 234
HpyCH4III ACNGT 2 cut(s) 206, 469
HpyCH4V TGCA 5 cut(s) 74, 123, 251, 304, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 315
HpyF3I CTNAG 2 cut(s) 270, 456
Hsp92II CATG 3 cut(s) 88, 95, 255
HspAI GCGC 1 cut(s) 88
Kzo9I GATC 3 cut(s) 138, 220, 331
LpnPI CCDG 9 cut(s) 30, 42, 78, 140, 308, 322, 335, 354, 366
LweI GCATC 1 cut(s) 291
MaeIII GTNAC 2 cut(s) 275, 463
MalI GATC 3 cut(s) 140, 222, 333
MboI GATC 3 cut(s) 138, 220, 331
MboII GAAGA 3 cut(s) 123, 171, 380
MfeI CAATTG 1 cut(s) 75
MluCI AATT 5 cut(s) 75, 171, 215, 382, 406
MlyI GAGTC 1 cut(s) 108
MnlI CCTC 4 cut(s) 17, 36, 127, 372
Mph1103I ATGCAT 2 cut(s) 253, 306
MseI TTAA 1 cut(s) 297
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 323
MunI CAATTG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 323
MwoI GCNNNNNNNGC 1 cut(s) 315
NdeII GATC 3 cut(s) 138, 220, 331
NlaIII CATG 3 cut(s) 88, 95, 255
NmuCI GTSAC 2 cut(s) 275, 463
NsiI ATGCAT 2 cut(s) 253, 306
PfeI GAWTC 1 cut(s) 413
PkrI GCNGC 1 cut(s) 320
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 321
PspFI CCCAGC 1 cut(s) 28
PspGI CCWGG 1 cut(s) 321
PspPI GGNCC 2 cut(s) 4, 19
RsaI GTAC 2 cut(s) 364, 374
RsaNI GTAC 2 cut(s) 363, 373
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 1 cut(s) 319
Sau3AI GATC 3 cut(s) 138, 220, 331
Sau96I GGNCC 2 cut(s) 4, 19
SchI GAGTC 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 323
SetI ASST 7 cut(s) 9, 24, 41, 63, 152, 235, 289
SfaNI GCATC 1 cut(s) 291
SinI GGWCC 2 cut(s) 4, 19
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 5 cut(s) 75, 171, 215, 382, 406
SsiI CCGC 2 cut(s) 265, 318
StyD4I CCNGG 1 cut(s) 321
TaaI ACNGT 2 cut(s) 206, 469
TaqI TCGA 1 cut(s) 41
TaqII GACCGA 2 cut(s) 446, 452
TasI AATT 5 cut(s) 75, 171, 215, 382, 406
TauI GCSGC 1 cut(s) 321
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 1 cut(s) 341
TseFI GTSAC 2 cut(s) 275, 463
Tsp45I GTSAC 2 cut(s) 275, 463
TspDTI ATGAA 1 cut(s) 120
TspRI CASTG 1 cut(s) 341
VpaK11BI GGWCC 2 cut(s) 4, 19
XapI RAATTY 2 cut(s) 215, 382
Zsp2I ATGCAT 2 cut(s) 253, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.