Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0017810

Physical Location & Seq

Genomic Coordinates Forward (+)

15272482 .. 15274366

Gene Structure 1885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017320

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAAAGTGGCTTTGATTGGTTCTGGTATTAATGGTTTGGTCTCAGCTTATTTTCTTGCAAAAGAAGGCGTTGAAGTGGTTCTATATGAGAAAAAAGACTACCTGGGTGATCATGCCAGGACTGTCATATATGATGGTGTTGATTTAGACCTTGGTTTCATGGTCTTCAATCATGTAATATATCCAAATATGATAGAGTTCTTTGAGAGCCTTGGCGTTGATATGGAGACATGCAACATGTCCTTCTCAGTGAGTTTAGATAAAGGATGGGGCTGTGAATGGGGTAGTCGAAATAGTCTCTCAAGCTTGTTTGCAGAAAAGAAGAACTTGTTCAACCCATACTTCTGGAAAATGCTTCTAGAAATCACCAAGTTTGAACATGATTTGATCAGGTTGGCTACCTATGATCTATCTGAGCTGCAAATTGAGGGTGATGGAAATTGCCAGTTTCGAGCAATAGCTTATCAGTTTTTCGCAATTCAGATTACCATAAGCATGTTAGAAAGCAGGTTTGACGAATCTGTGAATGTCAAGCAGCTTGAGAGCATATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0008825 GO:0009987 GO:0016740 GO:0016741 GO:0030258 GO:0032259 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase CMAS NAD_binding_8

Protein Analysis

185

Amino Acids

21.04

Weight (kDa)

4.65

Isoelectric Point (pI)

28.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	3 - 39	6.4e-07	FAD dependent oxidoreductase
NAD_binding_8	PF13450	6 - 71	3e-14	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	12 - 76	2e-08	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017810)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390341 RchiOBHm_Chr6g0258991
rosa_laevigata	RLG00000017320
rosa_multiflora	Rmu_sc0000106.1_g000014 Rmu_sc0007341.1_g000009
rosa_roxburghii	Rroxscaffold_5G00339910 Rroxscaffold_7G00183690 Rroxscaffold_7G00214860
rosa_samantha	Rh6BG176000 Rh6CG090500
rosa_wichuraiana	Rw0G021270 Rw5G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	498
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	4 cut(s)	74, 169, 334, 377
AjnI	CCWGG	2 cut(s)	102, 116
AluBI	AGCT	5 cut(s)	47, 306, 418, 461, 538
AluI	AGCT	5 cut(s)	47, 306, 418, 461, 538
Alw26I	GTCTC	3 cut(s)	46, 221, 302
ApeKI	GCWGC	2 cut(s)	418, 535
AseI	ATTAAT	1 cut(s)	30
Asp700I	GAANNNNTTC	2 cut(s)	78, 329
AsuHPI	GGTGA	3 cut(s)	119, 358, 443
BbsI	GAAGAC	1 cut(s)	157
BbvI	GCAGC	2 cut(s)	405, 547
BccI	CCATC	3 cut(s)	128, 261, 428
BciT130I	CCWGG	2 cut(s)	104, 118
BclI	TGATCA	2 cut(s)	109, 387
BcoDI	GTCTC	3 cut(s)	46, 221, 302
BfaI	CTAG	1 cut(s)	359
BfuAI	ACCTGC	1 cut(s)	498
BisI	GCNGC	2 cut(s)	419, 536
BlsI	GCNGC	2 cut(s)	420, 537
Bme1390I	CCNGG	2 cut(s)	104, 118
BmrFI	CCNGG	2 cut(s)	104, 118
BpiI	GAAGAC	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	286
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	103, 151, 211
Bse1I	ACTGG	1 cut(s)	445
BseBI	CCWGG	2 cut(s)	104, 118
BseDI	CCNNGG	3 cut(s)	103, 151, 211
BseGI	GGATG	1 cut(s)	272
BseMII	CTCAG	3 cut(s)	57, 261, 405
BseNI	ACTGG	1 cut(s)	445
BseXI	GCAGC	2 cut(s)	405, 547
BsmAI	GTCTC	3 cut(s)	46, 221, 302
Bso31I	GGTCTC	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	109, 387, 406
BspCNI	CTCAG	3 cut(s)	56, 260, 406
BspMI	ACCTGC	1 cut(s)	498
BspTNI	GGTCTC	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	445
BssECI	CCNNGG	3 cut(s)	103, 151, 211
BssMI	GATC	3 cut(s)	109, 387, 406
BssT1I	CCWWGG	2 cut(s)	151, 211
Bst2UI	CCWGG	2 cut(s)	104, 118
Bst4CI	ACNGT	1 cut(s)	124
BstDEI	CTNAG	3 cut(s)	43, 247, 414
BstF5I	GGATG	1 cut(s)	272
BstKTI	GATC	3 cut(s)	112, 390, 409
BstMAI	GTCTC	3 cut(s)	46, 221, 302
BstMBI	GATC	3 cut(s)	109, 387, 406
BstNI	CCWGG	2 cut(s)	104, 118
BstNSI	RCATGY	3 cut(s)	234, 241, 499
BstSCI	CCNGG	2 cut(s)	102, 116
BstV1I	GCAGC	2 cut(s)	405, 547
BstV2I	GAAGAC	1 cut(s)	157
BstXI	CCANNNNNNTGG	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	272
BtsIMutI	CAGTG	1 cut(s)	255
BveI	ACCTGC	1 cut(s)	498
CviAII	CATG	7 cut(s)	113, 160, 173, 231, 238, 380, 496
CviJI	RGCY	9 cut(s)	11, 47, 210, 273, 306, 398, 418, 461, 538
CviKI_1	RGCY	9 cut(s)	11, 47, 210, 273, 306, 398, 418, 461, 538
DdeI	CTNAG	3 cut(s)	43, 247, 414
DpnI	GATC	3 cut(s)	111, 389, 408
DpnII	GATC	3 cut(s)	109, 387, 406
Eco130I	CCWWGG	2 cut(s)	151, 211
Eco31I	GGTCTC	1 cut(s)	46
EcoRII	CCWGG	2 cut(s)	102, 116
EcoT14I	CCWWGG	2 cut(s)	151, 211
ErhI	CCWWGG	2 cut(s)	151, 211
FaeI	CATG	7 cut(s)	116, 163, 176, 234, 241, 383, 499
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FatI	CATG	7 cut(s)	112, 159, 172, 230, 237, 379, 495
FbaI	TGATCA	2 cut(s)	109, 387
Fnu4HI	GCNGC	2 cut(s)	419, 536
FokI	GGATG	1 cut(s)	279
Fsp4HI	GCNGC	2 cut(s)	419, 536
FspBI	CTAG	1 cut(s)	359
GluI	GCNGC	2 cut(s)	419, 536
Hin1II	CATG	7 cut(s)	116, 163, 176, 234, 241, 383, 499
HindIII	AAGCTT	1 cut(s)	304
HinfI	GANTC	1 cut(s)	518
HphI	GGTGA	3 cut(s)	119, 358, 443
Hpy188I	TCNGA	2 cut(s)	415, 483
Hpy188III	TCNNGA	2 cut(s)	346, 359
HpyAV	CCTTC	2 cut(s)	59, 253
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	4 cut(s)	59, 234, 314, 421
HpyF3I	CTNAG	3 cut(s)	43, 247, 414
Hsp92II	CATG	7 cut(s)	116, 163, 176, 234, 241, 383, 499
Ksp22I	TGATCA	2 cut(s)	109, 387
Kzo9I	GATC	3 cut(s)	109, 387, 406
LpnPI	CCDG	9 cut(s)	9, 89, 103, 116, 130, 331, 376, 458, 493
Lsp1109I	GCAGC	2 cut(s)	405, 547
MaeI	CTAG	1 cut(s)	359
MalI	GATC	3 cut(s)	111, 389, 408
MboI	GATC	3 cut(s)	109, 387, 406
MboII	GAAGA	2 cut(s)	157, 334
MluCI	AATT	3 cut(s)	423, 439, 477
MnlI	CCTC	1 cut(s)	421
MroXI	GAANNNNTTC	2 cut(s)	78, 329
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	494
MspR9I	CCNGG	2 cut(s)	104, 118
MvaI	CCWGG	2 cut(s)	104, 118
NdeII	GATC	3 cut(s)	109, 387, 406
NlaIII	CATG	7 cut(s)	116, 163, 176, 234, 241, 383, 499
NspI	RCATGY	3 cut(s)	234, 241, 499
PciI	ACATGT	1 cut(s)	237
PdmI	GAANNNNTTC	2 cut(s)	78, 329
PfeI	GAWTC	1 cut(s)	518
PkrI	GCNGC	2 cut(s)	420, 537
PscI	ACATGT	1 cut(s)	237
PshBI	ATTAAT	1 cut(s)	30
Psp6I	CCWGG	2 cut(s)	102, 116
PspGI	CCWGG	2 cut(s)	102, 116
RseI	CAYNNNNRTG	1 cut(s)	494
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	2 cut(s)	419, 536
Sau3AI	GATC	3 cut(s)	109, 387, 406
ScrFI	CCNGG	2 cut(s)	104, 118
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	2 cut(s)	301, 539
SmoI	CTYRAG	2 cut(s)	301, 539
Sse9I	AATT	3 cut(s)	423, 439, 477
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	2 cut(s)	102, 116
StyI	CCWWGG	2 cut(s)	151, 211
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	2 cut(s)	289, 451
TasI	AATT	3 cut(s)	423, 439, 477
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	255
TseI	GCWGC	2 cut(s)	418, 535
TspDTI	ATGAA	2 cut(s)	17, 148
TspRI	CASTG	1 cut(s)	255
VspI	ATTAAT	1 cut(s)	30
XbaI	TCTAGA	1 cut(s)	358
XceI	RCATGY	3 cut(s)	234, 241, 499
XmnI	GAANNNNTTC	2 cut(s)	78, 329
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.