Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0017810

Physical Location & Seq

Genomic Coordinates Forward (+)

46681711 .. 46683382

Gene Structure 1672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G029880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAAGGTGGCAGTGATTGGTTTTGGTATTAGTGGTTTGGTCTCGGCCTATGTTCTTGCAAAAGAAGGTGTTGAAGTGGTTCTATATGAGAAAAAAGACTACCTGGGTGGCCATGCCAAGACTGTCACATATGATGGTGTTGATTTGGACCTTGGTCTCATGGTCTTTAATCATGTGATGTATCCAAATATGATGAAGTTCTTTGAGAGCCTTGGAGTTGATATGGAGACATGCGACATGTCTTTCTCAGTGAGTTTAGATAAAGGACGGGGCTGTGAATGGGGTAGTCTAAATGGTCTCTCAAGCTTGTTTGCAGAAAAGAAGAACTTGTTCAACCCATACTTCTGGAAAATGCTTCAAGAAATCACCAAGTTTAAGCATGATTTGATCAATTATCTTGAGGTGCTTGAGAGTAACCTAGACATTGATCGGAATGAAACCTTGGGAGATATGTCTGATGCAAATGTTGTGAAGTTCAGGAATGATGGGAGACTTATGCTGTTAACTACTACAAATGGACATATTCATTTATCCATGTACAATGTAAAGCTTGTCTCAAGCAATGCTACATTAGAGGCTTCTTTTAGCCCAGATGGGATGTTTGTTATGTCAGTGGGCATAAAGTTCCTAAATATTTATGTCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0008825 GO:0009987 GO:0016740 GO:0016741 GO:0030258 GO:0032259 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase CMAS NAD_binding_8

Protein Analysis

215

Amino Acids

24.12

Weight (kDa)

5.2

Isoelectric Point (pI)

26.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	2 - 39	4.4e-07	FAD dependent oxidoreductase
NAD_binding_8	PF13450	5 - 71	7.6e-16	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	10 - 75	8.4e-13	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017810)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390341 RchiOBHm_Chr6g0258991
rosa_laevigata	RLG00000017320
rosa_multiflora	Rmu_sc0000106.1_g000014 Rmu_sc0007341.1_g000009
rosa_roxburghii	Rroxscaffold_5G00339910 Rroxscaffold_7G00183690 Rroxscaffold_7G00214860
rosa_samantha	Rh6BG176000 Rh6CG090500
rosa_wichuraiana	Rw0G021270 Rw5G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	109
AfaI	GTAC	1 cut(s)	539
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	3 cut(s)	74, 334, 359
AjnI	CCWGG	1 cut(s)	102
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AluBI	AGCT	2 cut(s)	306, 550
AluI	AGCT	2 cut(s)	306, 550
Alw26I	GTCTC	6 cut(s)	46, 161, 221, 302, 484, 559
AoxI	GGCC	2 cut(s)	45, 109
Asp700I	GAANNNNTTC	2 cut(s)	78, 329
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	148
BalI	TGGCCA	1 cut(s)	111
BccI	CCATC	3 cut(s)	128, 479, 587
BciT130I	CCWGG	1 cut(s)	104
BciVI	GTATCC	1 cut(s)	192
BclI	TGATCA	1 cut(s)	387
BcoDI	GTCTC	6 cut(s)	46, 161, 221, 302, 484, 559
BfaI	CTAG	1 cut(s)	419
BfuI	GTATCC	1 cut(s)	192
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	448
BoxI	GACNNNNGTC	1 cut(s)	153
BpuEI	CTTGAG	4 cut(s)	286, 419, 428, 541
BsaI	GGTCTC	3 cut(s)	46, 161, 302
BsaJI	CCNNGG	4 cut(s)	103, 151, 211, 441
Bse3DI	GCAATG	1 cut(s)	568
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	4 cut(s)	103, 151, 211, 441
BseGI	GGATG	1 cut(s)	603
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	1 cut(s)	261
BshFI	GGCC	2 cut(s)	47, 111
BsmAI	GTCTC	6 cut(s)	46, 161, 221, 302, 484, 559
BsnI	GGCC	2 cut(s)	47, 111
Bso31I	GGTCTC	3 cut(s)	46, 161, 302
Bsp1407I	TGTACA	1 cut(s)	537
Bsp143I	GATC	2 cut(s)	387, 427
BspANI	GGCC	2 cut(s)	47, 111
BspCNI	CTCAG	1 cut(s)	260
BspTNI	GGTCTC	3 cut(s)	46, 161, 302
BsrDI	GCAATG	1 cut(s)	568
BsrGI	TGTACA	1 cut(s)	537
BssECI	CCNNGG	4 cut(s)	103, 151, 211, 441
BssMI	GATC	2 cut(s)	387, 427
BssT1I	CCWWGG	3 cut(s)	151, 211, 441
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	124
BstAUI	TGTACA	1 cut(s)	537
BstDEI	CTNAG	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	603
BstKTI	GATC	2 cut(s)	390, 430
BstMAI	GTCTC	6 cut(s)	46, 161, 221, 302, 484, 559
BstMBI	GATC	2 cut(s)	387, 427
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	2 cut(s)	234, 241
BstPAI	GACNNNNGTC	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	102
BstXI	CCANNNNNNTGG	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	47, 111
BtsCI	GGATG	1 cut(s)	603
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	3 cut(s)	18, 255, 618
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	7 cut(s)	113, 160, 173, 231, 238, 380, 535
CviJI	RGCY	8 cut(s)	47, 111, 210, 273, 306, 550, 578, 588
CviKI_1	RGCY	8 cut(s)	47, 111, 210, 273, 306, 550, 578, 588
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	1 cut(s)	247
DpnI	GATC	2 cut(s)	389, 429
DpnII	GATC	2 cut(s)	387, 427
EaeI	YGGCCR	1 cut(s)	109
Eco130I	CCWWGG	3 cut(s)	151, 211, 441
Eco31I	GGTCTC	3 cut(s)	46, 161, 302
Eco47I	GGWCC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	3 cut(s)	151, 211, 441
ErhI	CCWWGG	3 cut(s)	151, 211, 441
FaeI	CATG	7 cut(s)	116, 163, 176, 234, 241, 383, 538
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FatI	CATG	7 cut(s)	112, 159, 172, 230, 237, 379, 534
FauNDI	CATATG	1 cut(s)	130
FbaI	TGATCA	1 cut(s)	387
FokI	GGATG	1 cut(s)	610
FspBI	CTAG	1 cut(s)	419
HaeIII	GGCC	2 cut(s)	47, 111
Hin1II	CATG	7 cut(s)	116, 163, 176, 234, 241, 383, 538
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HindIII	AAGCTT	2 cut(s)	304, 548
HpaI	GTTAAC	1 cut(s)	504
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	504
Hpy188I	TCNGA	2 cut(s)	432, 457
Hpy188III	TCNNGA	4 cut(s)	346, 359, 398, 478
Hpy8I	GTNNAC	1 cut(s)	504
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	59, 314, 461
HpyF3I	CTNAG	1 cut(s)	247
Hsp92II	CATG	7 cut(s)	116, 163, 176, 234, 241, 383, 538
Ksp22I	TGATCA	1 cut(s)	387
KspAI	GTTAAC	1 cut(s)	504
Kzo9I	GATC	2 cut(s)	387, 427
LpnPI	CCDG	5 cut(s)	89, 116, 331, 463, 603
LweI	GCATC	1 cut(s)	448
MaeI	CTAG	1 cut(s)	419
MaeIII	GTNAC	2 cut(s)	124, 413
MalI	GATC	2 cut(s)	389, 429
MboI	GATC	2 cut(s)	387, 427
MboII	GAAGA	1 cut(s)	334
MlsI	TGGCCA	1 cut(s)	111
MluCI	AATT	1 cut(s)	391
MluNI	TGGCCA	1 cut(s)	111
MnlI	CCTC	2 cut(s)	394, 568
Mox20I	TGGCCA	1 cut(s)	111
MroXI	GAANNNNTTC	2 cut(s)	78, 329
MscI	TGGCCA	1 cut(s)	111
MseI	TTAA	3 cut(s)	168, 375, 503
Msp20I	TGGCCA	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	2 cut(s)	387, 427
NlaIII	CATG	7 cut(s)	116, 163, 176, 234, 241, 383, 538
NmeAIII	GCCGAG	1 cut(s)	23
NmuCI	GTSAC	1 cut(s)	124
NspI	RCATGY	2 cut(s)	234, 241
PciI	ACATGT	1 cut(s)	237
PdmI	GAANNNNTTC	2 cut(s)	78, 329
PscI	ACATGT	1 cut(s)	237
PshAI	GACNNNNGTC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	148
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
SaqAI	TTAA	3 cut(s)	168, 375, 503
Sau3AI	GATC	2 cut(s)	387, 427
Sau96I	GGNCC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	9 cut(s)	9, 70, 105, 153, 308, 405, 420, 443, 552
SfaNI	GCATC	1 cut(s)	448
SinI	GGWCC	1 cut(s)	148
SmlI	CTYRAG	4 cut(s)	301, 398, 407, 556
SmoI	CTYRAG	4 cut(s)	301, 398, 407, 556
Sse9I	AATT	1 cut(s)	391
SspI	AATATT	1 cut(s)	634
SspMI	CTAG	1 cut(s)	419
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	3 cut(s)	151, 211, 441
TaaI	ACNGT	1 cut(s)	124
TasI	AATT	1 cut(s)	391
TatI	WGTACW	1 cut(s)	537
Tru1I	TTAA	3 cut(s)	168, 375, 503
Tru9I	TTAA	3 cut(s)	168, 375, 503
TscAI	CASTG	3 cut(s)	18, 255, 618
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	4 cut(s)	17, 209, 450, 515
TspRI	CASTG	3 cut(s)	18, 255, 618
VpaK11BI	GGWCC	1 cut(s)	148
XceI	RCATGY	2 cut(s)	234, 241
XmnI	GAANNNNTTC	2 cut(s)	78, 329
XspI	CTAG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.