Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0017810

Physical Location & Seq

Genomic Coordinates Reverse (-)

8321899 .. 8325671

Gene Structure 3773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00339910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCCGCCGCCGGATTTGGAAGACCTCGATGAGCGCGTTGTCCCTGGTTTGGTCTCAGCCTATGTTCTTGCAAAAGAAGGGGTTGAAGTGGTTCTATATGAGAAAAAAGACTACCTGGGTGGCCTTGCCAGGACTGTCACATATGATGGTGTTGATTTGGACCTTGGTTTCATGGTCTTCAATCATGTAATGTATCCAAATATGATGGAGTTCTTTGAGAGCCTTGGAGTTGATATGGAGACATGCAACATGTCCTTCTCAGTGACTTTAGATAAAGGACGGGGCTGTGAATGGGGTAGTCGAAATAGTCTCTCAAGCTTGTTTGCAGAAAAGAAGAATTTGTTCAACCCATACTTCTGGAAAATGCTTCGAGAAATCACCAAGTTTAAACATGATTTGATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0008825 GO:0009987 GO:0016740 GO:0016741 GO:0030258 GO:0032259 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase CMAS NAD_binding_8

Protein Analysis

135

Amino Acids

15.54

Weight (kDa)

4.9

Isoelectric Point (pI)

28.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_8	PF13450	16 - 75	1.1e-12	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	16 - 81	1e-12	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017810)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390341 RchiOBHm_Chr6g0258991
rosa_laevigata	RLG00000017320
rosa_multiflora	Rmu_sc0000106.1_g000014 Rmu_sc0007341.1_g000009
rosa_roxburghii	Rroxscaffold_5G00339910 Rroxscaffold_7G00183690 Rroxscaffold_7G00214860
rosa_samantha	Rh6BG176000 Rh6CG090500
rosa_wichuraiana	Rw0G021270 Rw5G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	36
AciI	CCGC	2 cut(s)	5, 8
AcsI	RAATTY	1 cut(s)	337
AfiI	CCNNNNNNNGG	1 cut(s)	49
AflIII	ACRYGT	1 cut(s)	249
AgsI	TTSAA	3 cut(s)	86, 181, 346
AjnI	CCWGG	3 cut(s)	43, 114, 128
AluBI	AGCT	1 cut(s)	318
AluI	AGCT	1 cut(s)	318
Alw26I	GTCTC	3 cut(s)	58, 233, 314
AoxI	GGCC	1 cut(s)	121
ApoI	RAATTY	1 cut(s)	337
Asp700I	GAANNNNTTC	2 cut(s)	90, 341
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	160
BbsI	GAAGAC	2 cut(s)	27, 169
BccI	CCATC	2 cut(s)	140, 199
BciT130I	CCWGG	3 cut(s)	45, 116, 130
BciVI	GTATCC	1 cut(s)	204
BclI	TGATCA	1 cut(s)	399
BcoDI	GTCTC	3 cut(s)	58, 233, 314
BfuI	GTATCC	1 cut(s)	204
BisI	GCNGC	2 cut(s)	5, 8
BlsI	GCNGC	2 cut(s)	6, 9
Bme1390I	CCNGG	3 cut(s)	45, 116, 130
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmrFI	CCNGG	3 cut(s)	45, 116, 130
BpiI	GAAGAC	2 cut(s)	27, 169
BpuEI	CTTGAG	1 cut(s)	298
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	4 cut(s)	43, 115, 163, 223
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
BseBI	CCWGG	3 cut(s)	45, 116, 130
BseDI	CCNNGG	4 cut(s)	43, 115, 163, 223
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	2 cut(s)	69, 273
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	3 cut(s)	58, 233, 314
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	123
Bso31I	GGTCTC	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	399
BspACI	CCGC	2 cut(s)	5, 8
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	2 cut(s)	68, 272
BspFNI	CGCG	1 cut(s)	36
BspTNI	GGTCTC	1 cut(s)	58
BssECI	CCNNGG	4 cut(s)	43, 115, 163, 223
BssMI	GATC	1 cut(s)	399
BssT1I	CCWWGG	2 cut(s)	163, 223
Bst2UI	CCWGG	3 cut(s)	45, 116, 130
Bst4CI	ACNGT	1 cut(s)	136
BstDEI	CTNAG	2 cut(s)	55, 259
BstFNI	CGCG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	1 cut(s)	402
BstMAI	GTCTC	3 cut(s)	58, 233, 314
BstMBI	GATC	1 cut(s)	399
BstNI	CCWGG	3 cut(s)	45, 116, 130
BstNSI	RCATGY	2 cut(s)	246, 253
BstSCI	CCNGG	3 cut(s)	43, 114, 128
BstUI	CGCG	1 cut(s)	36
BstV2I	GAAGAC	2 cut(s)	27, 169
BstXI	CCANNNNNNTGG	1 cut(s)	357
BsuI	GTATCC	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	267
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	160
CviAII	CATG	5 cut(s)	172, 185, 243, 250, 392
CviJI	RGCY	5 cut(s)	59, 123, 222, 285, 318
CviKI_1	RGCY	5 cut(s)	59, 123, 222, 285, 318
DdeI	CTNAG	2 cut(s)	55, 259
DpnI	GATC	1 cut(s)	401
DpnII	GATC	1 cut(s)	399
DraI	TTTAAA	1 cut(s)	388
Eco130I	CCWWGG	2 cut(s)	163, 223
Eco31I	GGTCTC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	160
EcoRII	CCWGG	3 cut(s)	43, 114, 128
EcoT14I	CCWWGG	2 cut(s)	163, 223
ErhI	CCWWGG	2 cut(s)	163, 223
FaeI	CATG	5 cut(s)	175, 188, 246, 253, 395
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	5 cut(s)	171, 184, 242, 249, 391
FauNDI	CATATG	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	399
Fnu4HI	GCNGC	2 cut(s)	5, 8
Fsp4HI	GCNGC	2 cut(s)	5, 8
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	2 cut(s)	5, 8
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	1 cut(s)	11
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	5 cut(s)	175, 188, 246, 253, 395
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	316
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	1 cut(s)	370
Hpy188I	TCNGA	1 cut(s)	404
Hpy188III	TCNNGA	2 cut(s)	358, 371
HpyAV	CCTTC	2 cut(s)	71, 265
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	3 cut(s)	71, 246, 326
HpyF3I	CTNAG	2 cut(s)	55, 259
Hsp92II	CATG	5 cut(s)	175, 188, 246, 253, 395
HspAI	GCGC	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	1 cut(s)	399
LpnPI	CCDG	8 cut(s)	24, 30, 57, 101, 115, 128, 142, 343
MaeIII	GTNAC	2 cut(s)	136, 262
MalI	GATC	1 cut(s)	401
MboI	GATC	1 cut(s)	399
MboII	GAAGA	3 cut(s)	32, 169, 346
MluCI	AATT	1 cut(s)	337
MnlI	CCTC	1 cut(s)	35
MroXI	GAANNNNTTC	2 cut(s)	90, 341
MseI	TTAA	1 cut(s)	387
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	3 cut(s)	45, 116, 130
MssI	GTTTAAAC	1 cut(s)	388
MvaI	CCWGG	3 cut(s)	45, 116, 130
MvnI	CGCG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	1 cut(s)	399
NlaIII	CATG	5 cut(s)	175, 188, 246, 253, 395
NmuCI	GTSAC	2 cut(s)	136, 262
NspI	RCATGY	2 cut(s)	246, 253
PciI	ACATGT	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PdmI	GAANNNNTTC	2 cut(s)	90, 341
PkrI	GCNGC	2 cut(s)	6, 9
PmeI	GTTTAAAC	1 cut(s)	388
PscI	ACATGT	1 cut(s)	249
Psp6I	CCWGG	3 cut(s)	43, 114, 128
PspGI	CCWGG	3 cut(s)	43, 114, 128
PspPI	GGNCC	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	2 cut(s)	5, 8
Sau3AI	GATC	1 cut(s)	399
Sau96I	GGNCC	1 cut(s)	160
ScrFI	CCNGG	3 cut(s)	45, 116, 130
SetI	ASST	4 cut(s)	27, 117, 165, 320
SinI	GGWCC	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	1 cut(s)	337
SsiI	CCGC	2 cut(s)	5, 8
StyD4I	CCNGG	3 cut(s)	43, 114, 128
StyI	CCWWGG	2 cut(s)	163, 223
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	3 cut(s)	27, 301, 370
TasI	AATT	1 cut(s)	337
TauI	GCSGC	2 cut(s)	7, 10
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	2 cut(s)	136, 262
Tsp45I	GTSAC	2 cut(s)	136, 262
TspDTI	ATGAA	1 cut(s)	160
TspRI	CASTG	1 cut(s)	267
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	1 cut(s)	337
XceI	RCATGY	2 cut(s)	246, 253
XmnI	GAANNNNTTC	2 cut(s)	90, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.