Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017810

Physical Location & Seq

Genomic Coordinates Forward (+)

65511564 .. 65518924

Gene Structure 7361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00214860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAAAGTGGCTTTGATTGGTTCTGGTATTAGTGGTTTGGTCTCAGCTTATTTTCTTGCAAAAGAAGGCGTTGCAGTGGTTCTATATGAGAAAAAAGACTACCCGGGTGATCATGCCAGGACTGTCACATATGATGGTGTTGATTTAGACCTTGGTTTCATGGTCTTCAATCATGTAATGTATCCAAATATGATGGAGTTCTTTGAGAGCCTTGGAGTTGATATGGAGACATGCAACATGTCATTCTCAGTGAGTTTAGATAAAGGACTGGGCTGTGAATGGGGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0008825 GO:0009987 GO:0016740 GO:0016741 GO:0030258 GO:0032259 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase CMAS NAD_binding_8

Protein Analysis

96

Amino Acids

10.53

Weight (kDa)

4.46

Isoelectric Point (pI)

12.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	2 - 39	1.7e-07	FAD dependent oxidoreductase
NAD_binding_8	PF13450	6 - 71	2.2e-16	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	10 - 75	1.8e-10	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017810)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390341 RchiOBHm_Chr6g0258991
rosa_laevigata	RLG00000017320
rosa_multiflora	Rmu_sc0000106.1_g000014 Rmu_sc0007341.1_g000009
rosa_roxburghii	Rroxscaffold_5G00339910 Rroxscaffold_7G00183690 Rroxscaffold_7G00214860
rosa_samantha	Rh6BG176000 Rh6CG090500
rosa_wichuraiana	Rw0G021270 Rw5G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
Alw26I	GTCTC	2 cut(s)	46, 221
Ama87I	CYCGRG	1 cut(s)	103
AsuC2I	CCSGG	2 cut(s)	104, 105
AsuHPI	GGTGA	1 cut(s)	119
AvaI	CYCGRG	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	157
BccI	CCATC	2 cut(s)	128, 187
BciT130I	CCWGG	1 cut(s)	118
BciVI	GTATCC	1 cut(s)	192
BclI	TGATCA	1 cut(s)	109
BcnI	CCSGG	2 cut(s)	104, 105
BcoDI	GTCTC	2 cut(s)	46, 221
BfuI	GTATCC	1 cut(s)	192
Bme1390I	CCNGG	3 cut(s)	104, 105, 118
BmeT110I	CYCGRG	1 cut(s)	103
BmrFI	CCNGG	3 cut(s)	104, 105, 118
BmrI	ACTGGG	1 cut(s)	278
BmuI	ACTGGG	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	157
BpuMI	CCSGG	2 cut(s)	104, 105
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	103, 151, 211
Bse1I	ACTGG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	3 cut(s)	103, 151, 211
BseMII	CTCAG	2 cut(s)	57, 261
BseNI	ACTGG	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	104
BsmAI	GTCTC	2 cut(s)	46, 221
Bso31I	GGTCTC	1 cut(s)	46
BsoBI	CYCGRG	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	109
BspCNI	CTCAG	2 cut(s)	56, 260
BspTNI	GGTCTC	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	3 cut(s)	103, 151, 211
BssMI	GATC	1 cut(s)	109
BssT1I	CCWWGG	2 cut(s)	151, 211
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	124
BstDEI	CTNAG	2 cut(s)	43, 247
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	2 cut(s)	46, 221
BstMBI	GATC	1 cut(s)	109
BstNI	CCWGG	1 cut(s)	118
BstNSI	RCATGY	2 cut(s)	234, 241
BstSCI	CCNGG	3 cut(s)	102, 103, 116
BstV2I	GAAGAC	1 cut(s)	157
BsuI	GTATCC	1 cut(s)	192
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	2 cut(s)	81, 255
Cfr9I	CCCGGG	1 cut(s)	103
CviAII	CATG	5 cut(s)	113, 160, 173, 231, 238
CviJI	RGCY	4 cut(s)	11, 47, 210, 273
CviKI_1	RGCY	4 cut(s)	11, 47, 210, 273
DdeI	CTNAG	2 cut(s)	43, 247
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	151, 211
Eco31I	GGTCTC	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	116
EcoT14I	CCWWGG	2 cut(s)	151, 211
ErhI	CCWWGG	2 cut(s)	151, 211
FaeI	CATG	5 cut(s)	116, 163, 176, 234, 241
FatI	CATG	5 cut(s)	112, 159, 172, 230, 237
FauNDI	CATATG	1 cut(s)	130
FbaI	TGATCA	1 cut(s)	109
HapII	CCGG	1 cut(s)	104
Hin1II	CATG	5 cut(s)	116, 163, 176, 234, 241
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	59, 74, 234
HpyF3I	CTNAG	2 cut(s)	43, 247
Hsp92II	CATG	5 cut(s)	116, 163, 176, 234, 241
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	109
LpnPI	CCDG	5 cut(s)	9, 103, 117, 130, 254
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	1 cut(s)	157
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	3 cut(s)	104, 105, 118
MvaI	CCWGG	1 cut(s)	118
NciI	CCSGG	2 cut(s)	104, 105
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	5 cut(s)	116, 163, 176, 234, 241
NmuCI	GTSAC	1 cut(s)	124
NspI	RCATGY	2 cut(s)	234, 241
PciI	ACATGT	1 cut(s)	237
PscI	ACATGT	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
Sau3AI	GATC	1 cut(s)	109
ScrFI	CCNGG	3 cut(s)	104, 105, 118
SetI	ASST	2 cut(s)	49, 153
SmaI	CCCGGG	1 cut(s)	105
StyD4I	CCNGG	3 cut(s)	102, 103, 116
StyI	CCWWGG	2 cut(s)	151, 211
TaaI	ACNGT	1 cut(s)	124
TscAI	CASTG	2 cut(s)	81, 255
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	17, 148
TspMI	CCCGGG	1 cut(s)	103
TspRI	CASTG	2 cut(s)	81, 255
XceI	RCATGY	2 cut(s)	234, 241
XmaI	CCCGGG	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.