Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00978

Orthogroup ID

OG0017810

Physical Location & Seq

Genomic Coordinates Forward (+)

125012 .. 126683

Gene Structure 1672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G021270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAAGGTGGCAGTGATTGGTTTTGGTATTAGTGGTTTGGTCTCGGCCTATGTTCTTGCAAAAGAAGGTGTTGAAGTGGTTCTATATGAGAAAAAAGACTACCTGGGTGGCCATGCCAAGACTGTCACATATGATGGTGTTGATTTGGACCTTGGTCTCATGGTCTTTAATCATGTGATGTATCCAAATATGATGAAGTTCTTTGAGAGCCTTGGAGTTGATATGGAGACATGCGACATGTCTTTCTCAGTGAGTTTAGATAAAGGACGGGGCTGTGAATGGGGTAGTCTAAATGGTCTCTCAAGCTTGTTTGCAGAAAAGAAGAACTTGTTCAACCCATACTTCTGGAAAATGCTTCAAGAAATCACCAAGTTTAAGCATGATTTGATCAGTATTTATCTTGAGGTGCTTGAGAGTAACCTAGACATTGATCGGAATGAAACCTTGGGAGACATGTCTGATGCAAATGTTGTGAAGTTCAGGAATGATGGGAGACTTATGCTGTTAACTACTACAAATGGACATATTCATTTATCCATGTACAATGTAAAGCTTGTCTCAAGCAATGCTACATTAGAGGCTTCTTTTAGCCCAGATGGGATGTTTGTTATGTCAGTGGGCATAAAGTTTCTGAATATTTATGTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0008825 GO:0009987 GO:0016740 GO:0016741 GO:0030258 GO:0032259 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase CMAS NAD_binding_8

Protein Analysis

216

Amino Acids

24.25

Weight (kDa)

5.36

Isoelectric Point (pI)

26.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	2 - 39	4.5e-07	FAD dependent oxidoreductase
NAD_binding_8	PF13450	5 - 71	7.7e-16	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	10 - 75	1e-12	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017810)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390341 RchiOBHm_Chr6g0258991
rosa_laevigata	RLG00000017320
rosa_multiflora	Rmu_sc0000106.1_g000014 Rmu_sc0007341.1_g000009
rosa_roxburghii	Rroxscaffold_5G00339910 Rroxscaffold_7G00183690 Rroxscaffold_7G00214860
rosa_samantha	Rh6BG176000 Rh6CG090500
rosa_wichuraiana	Rw0G021270 Rw5G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	109
AfaI	GTAC	1 cut(s)	542
AflIII	ACRYGT	2 cut(s)	237, 453
AgsI	TTSAA	3 cut(s)	74, 334, 359
AjnI	CCWGG	1 cut(s)	102
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AluBI	AGCT	2 cut(s)	306, 553
AluI	AGCT	2 cut(s)	306, 553
Alw26I	GTCTC	7 cut(s)	46, 161, 221, 302, 444, 487, 562
AoxI	GGCC	2 cut(s)	45, 109
Asp700I	GAANNNNTTC	2 cut(s)	78, 329
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	148
BalI	TGGCCA	1 cut(s)	111
BccI	CCATC	3 cut(s)	128, 482, 590
BciT130I	CCWGG	1 cut(s)	104
BciVI	GTATCC	1 cut(s)	192
BclI	TGATCA	1 cut(s)	387
BcoDI	GTCTC	7 cut(s)	46, 161, 221, 302, 444, 487, 562
BfaI	CTAG	1 cut(s)	422
BfuI	GTATCC	1 cut(s)	192
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	451
BoxI	GACNNNNGTC	1 cut(s)	153
BpuEI	CTTGAG	4 cut(s)	286, 422, 431, 544
BsaI	GGTCTC	3 cut(s)	46, 161, 302
BsaJI	CCNNGG	4 cut(s)	103, 151, 211, 444
BsaWI	WCCGGW	1 cut(s)	645
Bse3DI	GCAATG	1 cut(s)	571
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	4 cut(s)	103, 151, 211, 444
BseGI	GGATG	1 cut(s)	606
BseMI	GCAATG	1 cut(s)	571
BseMII	CTCAG	1 cut(s)	261
BshFI	GGCC	2 cut(s)	47, 111
BsiSI	CCGG	1 cut(s)	646
BsmAI	GTCTC	7 cut(s)	46, 161, 221, 302, 444, 487, 562
BsnI	GGCC	2 cut(s)	47, 111
Bso31I	GGTCTC	3 cut(s)	46, 161, 302
Bsp1407I	TGTACA	1 cut(s)	540
Bsp143I	GATC	2 cut(s)	387, 430
BspANI	GGCC	2 cut(s)	47, 111
BspCNI	CTCAG	1 cut(s)	260
BspTNI	GGTCTC	3 cut(s)	46, 161, 302
BsrDI	GCAATG	1 cut(s)	571
BsrGI	TGTACA	1 cut(s)	540
BssECI	CCNNGG	4 cut(s)	103, 151, 211, 444
BssMI	GATC	2 cut(s)	387, 430
BssT1I	CCWWGG	3 cut(s)	151, 211, 444
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	124
BstAUI	TGTACA	1 cut(s)	540
BstDEI	CTNAG	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	606
BstKTI	GATC	2 cut(s)	390, 433
BstMAI	GTCTC	7 cut(s)	46, 161, 221, 302, 444, 487, 562
BstMBI	GATC	2 cut(s)	387, 430
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	3 cut(s)	234, 241, 457
BstPAI	GACNNNNGTC	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	102
BstXI	CCANNNNNNTGG	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	47, 111
BtsCI	GGATG	1 cut(s)	606
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	3 cut(s)	18, 255, 621
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	541
CviAII	CATG	8 cut(s)	113, 160, 173, 231, 238, 380, 454, 538
CviJI	RGCY	8 cut(s)	47, 111, 210, 273, 306, 553, 581, 591
CviKI_1	RGCY	8 cut(s)	47, 111, 210, 273, 306, 553, 581, 591
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	1 cut(s)	247
DpnI	GATC	2 cut(s)	389, 432
DpnII	GATC	2 cut(s)	387, 430
EaeI	YGGCCR	1 cut(s)	109
Eco130I	CCWWGG	3 cut(s)	151, 211, 444
Eco31I	GGTCTC	3 cut(s)	46, 161, 302
Eco47I	GGWCC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	3 cut(s)	151, 211, 444
ErhI	CCWWGG	3 cut(s)	151, 211, 444
FaeI	CATG	8 cut(s)	116, 163, 176, 234, 241, 383, 457, 541
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FatI	CATG	8 cut(s)	112, 159, 172, 230, 237, 379, 453, 537
FauNDI	CATATG	1 cut(s)	130
FbaI	TGATCA	1 cut(s)	387
FokI	GGATG	1 cut(s)	613
FspBI	CTAG	1 cut(s)	422
HaeIII	GGCC	2 cut(s)	47, 111
HapII	CCGG	1 cut(s)	646
Hin1II	CATG	8 cut(s)	116, 163, 176, 234, 241, 383, 457, 541
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HindIII	AAGCTT	2 cut(s)	304, 551
HpaI	GTTAAC	1 cut(s)	507
HpaII	CCGG	1 cut(s)	646
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	507
Hpy188I	TCNGA	3 cut(s)	435, 460, 633
Hpy188III	TCNNGA	4 cut(s)	346, 359, 401, 481
Hpy8I	GTNNAC	1 cut(s)	507
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	59, 314, 464
HpyF3I	CTNAG	1 cut(s)	247
Hsp92II	CATG	8 cut(s)	116, 163, 176, 234, 241, 383, 457, 541
Ksp22I	TGATCA	1 cut(s)	387
KspAI	GTTAAC	1 cut(s)	507
Kzo9I	GATC	2 cut(s)	387, 430
LpnPI	CCDG	5 cut(s)	89, 116, 331, 466, 606
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	1 cut(s)	422
MaeIII	GTNAC	2 cut(s)	124, 416
MalI	GATC	2 cut(s)	389, 432
MboI	GATC	2 cut(s)	387, 430
MboII	GAAGA	1 cut(s)	334
MlsI	TGGCCA	1 cut(s)	111
MluNI	TGGCCA	1 cut(s)	111
MnlI	CCTC	2 cut(s)	397, 571
Mox20I	TGGCCA	1 cut(s)	111
MroXI	GAANNNNTTC	2 cut(s)	78, 329
MscI	TGGCCA	1 cut(s)	111
MseI	TTAA	3 cut(s)	168, 375, 506
Msp20I	TGGCCA	1 cut(s)	111
MspI	CCGG	1 cut(s)	646
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	2 cut(s)	387, 430
NlaIII	CATG	8 cut(s)	116, 163, 176, 234, 241, 383, 457, 541
NmeAIII	GCCGAG	1 cut(s)	23
NmuCI	GTSAC	1 cut(s)	124
NspI	RCATGY	3 cut(s)	234, 241, 457
PciI	ACATGT	2 cut(s)	237, 453
PdmI	GAANNNNTTC	2 cut(s)	78, 329
PscI	ACATGT	2 cut(s)	237, 453
PshAI	GACNNNNGTC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	148
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
SaqAI	TTAA	3 cut(s)	168, 375, 506
Sau3AI	GATC	2 cut(s)	387, 430
Sau96I	GGNCC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	9 cut(s)	9, 70, 105, 153, 308, 408, 423, 446, 555
SfaNI	GCATC	1 cut(s)	451
SinI	GGWCC	1 cut(s)	148
SmlI	CTYRAG	4 cut(s)	301, 401, 410, 559
SmoI	CTYRAG	4 cut(s)	301, 401, 410, 559
SspI	AATATT	1 cut(s)	637
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	3 cut(s)	151, 211, 444
TaaI	ACNGT	1 cut(s)	124
TatI	WGTACW	1 cut(s)	540
Tru1I	TTAA	3 cut(s)	168, 375, 506
Tru9I	TTAA	3 cut(s)	168, 375, 506
TscAI	CASTG	3 cut(s)	18, 255, 621
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	4 cut(s)	17, 209, 453, 518
TspRI	CASTG	3 cut(s)	18, 255, 621
VpaK11BI	GGWCC	1 cut(s)	148
XceI	RCATGY	3 cut(s)	234, 241, 457
XmnI	GAANNNNTTC	2 cut(s)	78, 329
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.