Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0017810

Physical Location & Seq

Genomic Coordinates Forward (+)

9963268 .. 9974135

Gene Structure 10868 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG090500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAAAGTGGCTTTGATTGGTTTTGGTATTAGTGGTTTGGTCTCAACTTATTTTCTTGCAAAAGAAGGCGTTGAAGTGGTTCTATATGAGAAAAAAGACTATCCGGGTGATCATGTCAGGATTGTCACATATGATGGTGTTGATTTGGACCTTGGTTTCATGGTCTTCAATCATGTAATGTATCCAAATATGATGGAGTTCTTTGAGAGCCTTGGAGTTGATATGGAGACATGCAACATGTCCTTCTCAGTGAGTTTAGATAAAGGATGGGGCTGTGAATGGGGAAGTCGAAATAGTCTCTCAAGCTTGTTTGCAAAAAAGAAGAACTTGTTCAACCCATACTTCTGGAAAATGCTTCAAGAAATCACCAAGTTTGAACATGATTTGATCAAGAAATGTAGTATACCAAGTGTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0008825 GO:0009987 GO:0016740 GO:0016741 GO:0030258 GO:0032259 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase CMAS NAD_binding_8

Protein Analysis

139

Amino Acids

15.92

Weight (kDa)

5.57

Isoelectric Point (pI)

22.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_8	PF13450	6 - 71	4.1e-12	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	10 - 75	3.6e-08	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0017810)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390341 RchiOBHm_Chr6g0258991
rosa_laevigata	RLG00000017320
rosa_multiflora	Rmu_sc0000106.1_g000014 Rmu_sc0007341.1_g000009
rosa_roxburghii	Rroxscaffold_5G00339910 Rroxscaffold_7G00183690 Rroxscaffold_7G00214860
rosa_samantha	Rh6BG176000 Rh6CG090500
rosa_wichuraiana	Rw0G021270 Rw5G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	403
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	5 cut(s)	74, 169, 334, 359, 377
AluBI	AGCT	1 cut(s)	306
AluI	AGCT	1 cut(s)	306
Alw26I	GTCTC	3 cut(s)	46, 221, 302
Asp700I	GAANNNNTTC	2 cut(s)	78, 329
AspS9I	GGNCC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	119, 358
AvaII	GGWCC	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	157
BccI	CCATC	3 cut(s)	128, 187, 261
BciVI	GTATCC	1 cut(s)	192
BclI	TGATCA	2 cut(s)	109, 387
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	3 cut(s)	46, 221, 302
BfuI	GTATCC	1 cut(s)	192
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	286
BpuMI	CCSGG	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	151, 211
BseDI	CCNNGG	2 cut(s)	151, 211
BseGI	GGATG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	104
BsmAI	GTCTC	3 cut(s)	46, 221, 302
Bso31I	GGTCTC	1 cut(s)	46
Bsp143I	GATC	2 cut(s)	109, 387
BspCNI	CTCAG	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	151, 211
BssMI	GATC	2 cut(s)	109, 387
BssNAI	GTATAC	1 cut(s)	404
BssT1I	CCWWGG	2 cut(s)	151, 211
Bst1107I	GTATAC	1 cut(s)	404
BstDEI	CTNAG	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	272
BstKTI	GATC	2 cut(s)	112, 390
BstMAI	GTCTC	3 cut(s)	46, 221, 302
BstMBI	GATC	2 cut(s)	109, 387
BstNSI	RCATGY	2 cut(s)	234, 241
BstSCI	CCNGG	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	157
BstXI	CCANNNNNNTGG	1 cut(s)	345
BstZ17I	GTATAC	1 cut(s)	404
BsuI	GTATCC	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	272
BtsIMutI	CAGTG	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	148
CviAII	CATG	6 cut(s)	113, 160, 173, 231, 238, 380
CviJI	RGCY	4 cut(s)	11, 210, 273, 306
CviKI_1	RGCY	4 cut(s)	11, 210, 273, 306
DdeI	CTNAG	1 cut(s)	247
DpnI	GATC	2 cut(s)	111, 389
DpnII	GATC	2 cut(s)	109, 387
Eco130I	CCWWGG	2 cut(s)	151, 211
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	148
EcoT14I	CCWWGG	2 cut(s)	151, 211
ErhI	CCWWGG	2 cut(s)	151, 211
FaeI	CATG	6 cut(s)	116, 163, 176, 234, 241, 383
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FatI	CATG	6 cut(s)	112, 159, 172, 230, 237, 379
FauNDI	CATATG	1 cut(s)	130
FbaI	TGATCA	2 cut(s)	109, 387
FblI	GTMKAC	1 cut(s)	403
FokI	GGATG	1 cut(s)	279
HapII	CCGG	1 cut(s)	104
Hin1II	CATG	6 cut(s)	116, 163, 176, 234, 241, 383
HindIII	AAGCTT	1 cut(s)	304
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	2 cut(s)	119, 358
Hpy166II	GTNNAC	1 cut(s)	404
Hpy188III	TCNNGA	4 cut(s)	118, 346, 359, 391
Hpy8I	GTNNAC	1 cut(s)	404
HpyAV	CCTTC	2 cut(s)	59, 253
HpyCH4V	TGCA	3 cut(s)	59, 234, 314
HpyF3I	CTNAG	1 cut(s)	247
Hsp92II	CATG	6 cut(s)	116, 163, 176, 234, 241, 383
Ksp22I	TGATCA	2 cut(s)	109, 387
Kzo9I	GATC	2 cut(s)	109, 387
LpnPI	CCDG	3 cut(s)	103, 117, 331
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	2 cut(s)	111, 389
MboI	GATC	2 cut(s)	109, 387
MboII	GAAGA	2 cut(s)	157, 334
MluCI	AATT	1 cut(s)	415
MroXI	GAANNNNTTC	2 cut(s)	78, 329
MseI	TTAA	1 cut(s)	418
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	105
NciI	CCSGG	1 cut(s)	105
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	2 cut(s)	109, 387
NlaIII	CATG	6 cut(s)	116, 163, 176, 234, 241, 383
NmuCI	GTSAC	1 cut(s)	124
NspI	RCATGY	2 cut(s)	234, 241
PciI	ACATGT	1 cut(s)	237
PdmI	GAANNNNTTC	2 cut(s)	78, 329
PscI	ACATGT	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	418
Sau3AI	GATC	2 cut(s)	109, 387
Sau96I	GGNCC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	105
SetI	ASST	2 cut(s)	153, 308
SinI	GGWCC	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	1 cut(s)	415
StyD4I	CCNGG	1 cut(s)	103
StyI	CCWWGG	2 cut(s)	151, 211
TaqI	TCGA	1 cut(s)	289
TasI	AATT	1 cut(s)	415
Tru1I	TTAA	1 cut(s)	418
Tru9I	TTAA	1 cut(s)	418
TscAI	CASTG	1 cut(s)	255
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	17, 148
TspRI	CASTG	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	148
XceI	RCATGY	2 cut(s)	234, 241
XmiI	GTMKAC	1 cut(s)	403
XmnI	GAANNNNTTC	2 cut(s)	78, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.