Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007341.1

Orthogroup ID

OG0017810

Physical Location & Seq

Genomic Coordinates Reverse (-)

37576 .. 40331

Gene Structure 2756 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007341.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atgaaggtggcagtgattggttttggtattagtggtttggtctcggcctatgttcttgcaaaagaaggtgttgaagtggttctatatgagaaaaaagactacctgggtggccatgccaagactgtcacatatgatggtgttgatttggaccttggtctcatggtctttaatcatgtgatgtatccaaatatgatgaagttctttgagagccttggagttgatatggagacatgcgacatgtctttctcagtgagtttagataaaggacggggctgtgaatggggtagtctaaatggtctctcaagcttgtttgcagaaaagaagaacttgttcaacccatacttctggaaaatgcttcaagaaatcaacaagtttaagcatgatttgatcagttatcttgaggtgcttgagagtaacctagacattgatcggaatgaaaccttggggcagtttattgagtcgcatcactactctgaactagttttgaaggcttaccttattccaatatgtagttcaatcttgtcgtgtccttcagaaggagttataagcttctcagctttctcagtgctttcgttatccatgtacaatgtaaagcttgtctcaagcaatgctacattagaggcttcttttagcccagatgggatgtttgttatgtcagctcaaagagagaagataagtgaagctaatcaaggtttaaagcagaacagcagctatagtgtcaaagctctagagtttaaactcaaaagtgaggccttggcatttgtcattactggatacttactaacaggatctgccattggacccagaggcttgaattttgtcagtgaaattgtcaggacccaccccggaattaccccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0008825 GO:0009987 GO:0016740 GO:0016741 GO:0030258 GO:0032259 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase CMAS NAD_binding_8

Protein Analysis

286

Amino Acids

31.61

Weight (kDa)

5.43

Isoelectric Point (pI)

27.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017810)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390341 RchiOBHm_Chr6g0258991
rosa_laevigata	RLG00000017320
rosa_multiflora	Rmu_sc0000106.1_g000014 Rmu_sc0007341.1_g000009
rosa_roxburghii	Rroxscaffold_5G00339910 Rroxscaffold_7G00183690 Rroxscaffold_7G00214860
rosa_samantha	Rh6BG176000 Rh6CG090500
rosa_wichuraiana	Rw0G021270 Rw5G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	545
AclWI	GGATC	1 cut(s)	796
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	814
AcuI	CTGAAG	1 cut(s)	516
AfaI	GTAC	1 cut(s)	584
AfiI	CCNNNNNNNGG	1 cut(s)	536
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	6 cut(s)	74, 334, 359, 487, 516, 814
AhlI	ACTAGT	1 cut(s)	478
AjnI	CCWGG	1 cut(s)	102
AjuI	GAANNNNNNNTTGG	4 cut(s)	425, 457, 496, 528
AluBI	AGCT	8 cut(s)	306, 549, 557, 595, 659, 683, 711, 725
AluI	AGCT	8 cut(s)	306, 549, 557, 595, 659, 683, 711, 725
Alw26I	GTCTC	5 cut(s)	46, 161, 221, 302, 604
AlwI	GGATC	1 cut(s)	796
AlwNI	CAGNNNCTG	1 cut(s)	791
AoxI	GGCC	3 cut(s)	45, 109, 750
ApeKI	GCWGC	1 cut(s)	708
ApoI	RAATTY	1 cut(s)	814
Asp700I	GAANNNNTTC	2 cut(s)	78, 329
AspS9I	GGNCC	3 cut(s)	148, 800, 837
AsuC2I	CCSGG	1 cut(s)	846
AvaII	GGWCC	3 cut(s)	148, 800, 837
BalI	TGGCCA	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	720
BccI	CCATC	2 cut(s)	128, 632
BciT130I	CCWGG	1 cut(s)	104
BciVI	GTATCC	2 cut(s)	192, 767
BclI	TGATCA	1 cut(s)	387
BcnI	CCSGG	1 cut(s)	846
BcoDI	GTCTC	5 cut(s)	46, 161, 221, 302, 604
BcuI	ACTAGT	1 cut(s)	478
BfaI	CTAG	3 cut(s)	419, 479, 728
BfmI	CTRYAG	1 cut(s)	712
BfuI	GTATCC	2 cut(s)	192, 767
BisI	GCNGC	1 cut(s)	709
BlsI	GCNGC	1 cut(s)	710
Bme1390I	CCNGG	2 cut(s)	104, 846
Bme18I	GGWCC	3 cut(s)	148, 800, 837
BmgT120I	GGNCC	3 cut(s)	148, 800, 837
BmiI	GGNNCC	2 cut(s)	802, 839
BmrFI	CCNGG	2 cut(s)	104, 846
BmsI	GCATC	1 cut(s)	472
BoxI	GACNNNNGTC	1 cut(s)	153
BpuEI	CTTGAG	4 cut(s)	286, 419, 428, 586
BpuMI	CCSGG	1 cut(s)	846
BsaI	GGTCTC	3 cut(s)	46, 161, 302
BsaJI	CCNNGG	6 cut(s)	103, 151, 211, 441, 753, 844
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
Bse1I	ACTGG	1 cut(s)	775
Bse3DI	GCAATG	1 cut(s)	613
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	6 cut(s)	103, 151, 211, 441, 753, 844
BseGI	GGATG	1 cut(s)	648
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMI	GCAATG	1 cut(s)	613
BseMII	CTCAG	3 cut(s)	261, 567, 576
BseNI	ACTGG	1 cut(s)	775
BseXI	GCAGC	1 cut(s)	720
BshFI	GGCC	3 cut(s)	47, 111, 752
BsiSI	CCGG	1 cut(s)	846
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmAI	GTCTC	5 cut(s)	46, 161, 221, 302, 604
BsnI	GGCC	3 cut(s)	47, 111, 752
Bso31I	GGTCTC	3 cut(s)	46, 161, 302
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	3 cut(s)	387, 427, 788
BspANI	GGCC	3 cut(s)	47, 111, 752
BspCNI	CTCAG	3 cut(s)	260, 566, 575
BspLI	GGNNCC	2 cut(s)	802, 839
BspPI	GGATC	1 cut(s)	796
BspTNI	GGTCTC	3 cut(s)	46, 161, 302
BsrDI	GCAATG	1 cut(s)	613
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	775
BssECI	CCNNGG	6 cut(s)	103, 151, 211, 441, 753, 844
BssMI	GATC	3 cut(s)	387, 427, 788
BssT1I	CCWWGG	4 cut(s)	151, 211, 441, 753
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	124
BstAUI	TGTACA	1 cut(s)	582
BstDEI	CTNAG	3 cut(s)	247, 553, 562
BstENI	CCTNNNNNAGG	1 cut(s)	534
BstF5I	GGATG	1 cut(s)	648
BstKTI	GATC	3 cut(s)	390, 430, 791
BstMAI	GTCTC	5 cut(s)	46, 161, 221, 302, 604
BstMBI	GATC	3 cut(s)	387, 427, 788
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	2 cut(s)	234, 241
BstPAI	GACNNNNGTC	1 cut(s)	153
BstSCI	CCNGG	2 cut(s)	102, 844
BstSFI	CTRYAG	1 cut(s)	712
BstV1I	GCAGC	1 cut(s)	720
BstX2I	RGATCY	1 cut(s)	788
BstXI	CCANNNNNNTGG	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	788
BsuI	GTATCC	2 cut(s)	192, 767
BsuRI	GGCC	3 cut(s)	47, 111, 752
BtsCI	GGATG	1 cut(s)	648
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	4 cut(s)	18, 255, 570, 829
CaiI	CAGNNNCTG	1 cut(s)	791
Cfr13I	GGNCC	3 cut(s)	148, 800, 837
Csp6I	GTAC	1 cut(s)	583
CviAII	CATG	7 cut(s)	113, 160, 173, 231, 238, 380, 580
CviQI	GTAC	1 cut(s)	583
DdeI	CTNAG	3 cut(s)	247, 553, 562
DpnI	GATC	3 cut(s)	389, 429, 790
DpnII	GATC	3 cut(s)	387, 427, 788
DraI	TTTAAA	2 cut(s)	696, 736
EaeI	YGGCCR	1 cut(s)	109
Eco130I	CCWWGG	4 cut(s)	151, 211, 441, 753
Eco147I	AGGCCT	1 cut(s)	752
Eco31I	GGTCTC	3 cut(s)	46, 161, 302
Eco47I	GGWCC	3 cut(s)	148, 800, 837
Eco57I	CTGAAG	1 cut(s)	516
EcoNI	CCTNNNNNAGG	1 cut(s)	534
EcoO109I	RGGNCCY	1 cut(s)	837
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	4 cut(s)	151, 211, 441, 753
ErhI	CCWWGG	4 cut(s)	151, 211, 441, 753
FaeI	CATG	7 cut(s)	116, 163, 176, 234, 241, 383, 583
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FatI	CATG	7 cut(s)	112, 159, 172, 230, 237, 379, 579
FauNDI	CATATG	1 cut(s)	130
FbaI	TGATCA	1 cut(s)	387
Fnu4HI	GCNGC	1 cut(s)	709
FokI	GGATG	1 cut(s)	655
Fsp4HI	GCNGC	1 cut(s)	709
FspBI	CTAG	3 cut(s)	419, 479, 728
GluI	GCNGC	1 cut(s)	709
HaeIII	GGCC	3 cut(s)	47, 111, 752
HapII	CCGG	1 cut(s)	846
Hin1II	CATG	7 cut(s)	116, 163, 176, 234, 241, 383, 583
HindIII	AAGCTT	3 cut(s)	304, 547, 593
HinfI	GANTC	1 cut(s)	458
HpaII	CCGG	1 cut(s)	846
Hpy188I	TCNGA	3 cut(s)	432, 475, 535
Hpy188III	TCNNGA	5 cut(s)	346, 359, 398, 728, 835
HpyAV	CCTTC	4 cut(s)	59, 481, 530, 540
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	59, 314
HpyF3I	CTNAG	3 cut(s)	247, 553, 562
Hsp92II	CATG	7 cut(s)	116, 163, 176, 234, 241, 383, 583
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	3 cut(s)	387, 427, 788
LpnPI	CCDG	8 cut(s)	89, 116, 331, 648, 756, 771, 817, 820
Lsp1109I	GCAGC	1 cut(s)	720
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	3 cut(s)	419, 479, 728
MaeIII	GTNAC	2 cut(s)	124, 413
MalI	GATC	3 cut(s)	389, 429, 790
MboI	GATC	3 cut(s)	387, 427, 788
MboII	GAAGA	2 cut(s)	334, 682
MflI	RGATCY	1 cut(s)	788
MlsI	TGGCCA	1 cut(s)	111
MluCI	AATT	3 cut(s)	814, 828, 849
MluNI	TGGCCA	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	467
MnlI	CCTC	4 cut(s)	394, 613, 742, 800
Mox20I	TGGCCA	1 cut(s)	111
MroXI	GAANNNNTTC	2 cut(s)	78, 329
MscI	TGGCCA	1 cut(s)	111
MseI	TTAA	4 cut(s)	168, 375, 695, 735
Msp20I	TGGCCA	1 cut(s)	111
MspI	CCGG	1 cut(s)	846
MspR9I	CCNGG	2 cut(s)	104, 846
MssI	GTTTAAAC	1 cut(s)	736
MvaI	CCWGG	1 cut(s)	104
NciI	CCSGG	1 cut(s)	846
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	3 cut(s)	387, 427, 788
NlaIII	CATG	7 cut(s)	116, 163, 176, 234, 241, 383, 583
NlaIV	GGNNCC	2 cut(s)	802, 839
NmeAIII	GCCGAG	1 cut(s)	23
NmuCI	GTSAC	1 cut(s)	124
NspI	RCATGY	2 cut(s)	234, 241
PceI	AGGCCT	1 cut(s)	752
PciI	ACATGT	1 cut(s)	237
PdmI	GAANNNNTTC	2 cut(s)	78, 329
PkrI	GCNGC	1 cut(s)	710
PleI	GAGTC	1 cut(s)	466
PmeI	GTTTAAAC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	466
PpuMI	RGGWCCY	1 cut(s)	837
PscI	ACATGT	1 cut(s)	237
PshAI	GACNNNNGTC	1 cut(s)	153
PsiI	TTATAA	1 cut(s)	545
Psp5II	RGGWCCY	1 cut(s)	837
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	802, 839
PspPI	GGNCC	3 cut(s)	148, 800, 837
PspPPI	RGGWCCY	1 cut(s)	837
PstNI	CAGNNNCTG	1 cut(s)	791
PsuI	RGATCY	1 cut(s)	788
RsaI	GTAC	1 cut(s)	584
RsaNI	GTAC	1 cut(s)	583
SaqAI	TTAA	4 cut(s)	168, 375, 695, 735
SatI	GCNGC	1 cut(s)	709
Sau3AI	GATC	3 cut(s)	387, 427, 788
Sau96I	GGNCC	3 cut(s)	148, 800, 837
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	2 cut(s)	104, 846
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	712
SinI	GGWCC	3 cut(s)	148, 800, 837
SmlI	CTYRAG	4 cut(s)	301, 398, 407, 601
SmoI	CTYRAG	4 cut(s)	301, 398, 407, 601
SpeI	ACTAGT	1 cut(s)	478
Sse9I	AATT	3 cut(s)	814, 828, 849
SseBI	AGGCCT	1 cut(s)	752
SspMI	CTAG	3 cut(s)	419, 479, 728
StuI	AGGCCT	1 cut(s)	752
StyD4I	CCNGG	2 cut(s)	102, 844
StyI	CCWWGG	4 cut(s)	151, 211, 441, 753
TaaI	ACNGT	1 cut(s)	124
TasI	AATT	3 cut(s)	814, 828, 849
TatI	WGTACW	1 cut(s)	582
Tru1I	TTAA	4 cut(s)	168, 375, 695, 735
Tru9I	TTAA	4 cut(s)	168, 375, 695, 735
TscAI	CASTG	4 cut(s)	18, 255, 570, 829
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	1 cut(s)	708
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	3 cut(s)	17, 209, 450
TspRI	CASTG	4 cut(s)	18, 255, 570, 829
VpaK11BI	GGWCC	3 cut(s)	148, 800, 837
XagI	CCTNNNNNAGG	1 cut(s)	534
XapI	RAATTY	1 cut(s)	814
XbaI	TCTAGA	1 cut(s)	727
XceI	RCATGY	2 cut(s)	234, 241
XmnI	GAANNNNTTC	2 cut(s)	78, 329
XspI	CTAG	3 cut(s)	419, 479, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.