Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009385

Physical Location & Seq

Genomic Coordinates Forward (+)

48654449 .. 48666116

Gene Structure 11668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019229

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2355 bp

ATGGCGGAAGTCGATCCTCATATCCATGAAGAACACTTCGACGTTCTCACCAGAACCGGCGAGAAGACCGGCATTTCCAAGCCCAGGGGAGATGTCCATCGAGACGGGGATTACCATCGAGCTGTTCATGTCTGGATTTACGCCGAAAGCACGCAAGAACTGCTTATCCAGAAACGTGCTGACTTCAAGGATTCCTATGCAGGCTTGTGGGATATCTCCAGTGCTGGACATATATCCGCCGGGGATTCGTCGCTTATCACTGCCCGGAGGGAGCTTGAAGAGGAGCTAGGTATAATACTTCCAAAAGATGCATTTGAAAGGATCTTCGTATTTCTTCAAGAGTGTGTAATAAATGATGGAAAATTCATCAATAATGAATTCAATGATGTATACTTGGTTACAACTCTAGATCCTATCCCTCTTGAGGCATTTACTCTTCAGGAAACAGAAGTCTCTGCTGTTAAATATATTTTTTACGAGGAGTATAAAAGCTTACTAGCGAAAGAAGATCCCGAGTACGTACCCTATGATGTAAATGGGCAGTATGGTCAATTGTTTGACATAATTGCACGGAGGTACAAGGAGAACACTACAGCTCGAAGTTTGTCACTGCAAAAGCAACTCCAACGTTATGCTCCTGTTACCCTCAATCCAGAGTTGACAGGGCTCACAGATGCAGATAAGGAGGCTCTTGTTATACTTATTAAGGCTGCAACTATTTTGGATGAGATCTTTCACCTGCAGGTGTGGTACAGTAATCCAGCTCTAAGAGATTGGTTGAAGGAGCATGCAGATGCATCACAAATGGACAAGTTGAAATGGATGTATTATTTAATTAATAAGAGTCCATGGTCGTGCCTTGATGAAAATGAGGCATTCTTGACAACTGCTGACTCAGCTGTAAAGTTGCTTCCTGAAGCAACAAAGCCTGTTACTGGGTGGAAGGGACTTGAATATAGAGCTGCATTCCCTATGCTAAAACCACCGGGGGCAAACTTCTATCCTCCAGACATGGACAAAACGGAATTTGAACTTTGGAAGAGCAGTCTAACAGTGGACCAACAAGAAGATGCAACAGGCTTTTTCAATGTTATTAAAAGACACAGTGAATCTAGTCTAGATTCCACTTTAAATGGTAATACATTTGGAAGCAAAAACCATTCTGTGGGTTCGACTCCTGACTTGTACACTATCCCTTTCTCCCAAGAGTATAATACTTTCCTCACACAAGCTGCTGAATTATTGCATAAAGCAGGTGACTTGACCAGTTCAACCAGTTTGAAGAGGTTGCTTCACAGCAAGGGCGATGCTTTCCTATCAAATGATTACTATGACTCAGATATAGCCTGGATGGAGTTGGACTCTAAGCTGGATGTCACTATAGGTCCATACGAAACATATGAAGATGCACTGTTCGGGTATAAGGCTACATTTGAAGCATTTATTGGAGTTCGGGATGACAAAGCAACGGCTCAGCTGAAGCTTTTTGGTGATAACTTGCAGTTTTTGGAGCAAAATCTCCCACTGGACGATGTCTACAAGTCCAAGGAAGTGATTTCTGCTCCTATTCGAGTTATTGAGCTTCTATATAATGCCGGAGATGTAAAGGGCCCTCAAACTGTTGCTTTCAATCTACCAAATGATGAGCGCATTGTAAAAGATCGAGGAACATCTATGGTCATGCTTAAGAATATCTCAGAGGCCAAGTTCAAACATATTCTTCTGCCTATAGCTGATGTTTGTATTACAAAGGAACAACAAGAACTTGTAGATTTTGAATCCTTCTTCACTCACACAATTTGCCATGAATGCTGTCATGGGATTGGACCTCATACCATAACACTTCCAAATGGTAGAAAGTCTACAGTGAGATTGGAACTGCAAGAACTCCACTCAGCTTTGGAAGAAGCAAAAGCTGATATAGTTGGCCTTTGGGCACTGAAATTCCTAATCCACAAGGAACTGCTCCCGAAGAGCTTATTGAAATCCATGTATGTTTCTTTTCTTGCTGGATGCTTCCGCTCAGTTCGTTTCGGTCTTAAGGAAGCTCATGGAAAAGGACAAGCATTGCAGTTTAACTGGTTGTACAAGCAAGGAGCCTTTATTTTGAATCCTGATGAAACATTTTCTGTTGACTTTGATAAGGTTGAAGGTGCGGTTGAGAGCCTGAGTAGGGAGATACTTACCATACAAGCAAAAGGTGACAAAGAGGCTGCAAAATTGCTTCTTCAGAAACACTGCACAATGACAGACCCATTAAAAGTTGCTTTGCAACGATTAGAAAAAGTTCAGGTACCGGTGGATATAGTTCCCAGATTTCCGGTGGCTGAGAATGTATTGATTCAAAATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0016787 GO:0019538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX Peptidase_M49

Protein Analysis

785

Amino Acids

88.82

Weight (kDa)

5.16

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	38 - 171	5e-13	NUDIX domain
Peptidase_M49	PF03571	403 - 609	9.1e-09	Peptidase family M49

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79690 AT1G79690
fragaria_vesca	FvH4_6g28160 FvH4_6g28160 FvH4_6g28160 FvH4_6g28160 FvH4_6g28160 FvH4_6g28160
malus_domestica	MD17G1227300.v1.1
prunus_persica	Prupe.3G104700_v2.0.a1
pyrus_communis	pycom17g23060
rosa_chinensis	RchiOBHm_Chr2g0132121
rosa_laevigata	RLG00000019229
rosa_multiflora	Rmu_sc0002005.1_g000003 Rmu_sc0009538.1_g000018 Rmu_sc0033552.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112380
rosa_rugosa	Rorug02G0302400
rosa_samantha	Rh2AG355500 Rh2BG361600 Rh2CG339000
rosa_wichuraiana	Rw2G028860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	733, 747, 1244
Acc36I	ACCTGC	3 cut(s)	733, 747, 1244
Acc65I	GGTACC	1 cut(s)	2293
AccB1I	GGYRCC	1 cut(s)	2293
AccB7I	CCANNNNNTGG	1 cut(s)	1165
AccBSI	CCGCTC	1 cut(s)	2022
AccI	GTMKAC	3 cut(s)	390, 1536, 1862
AciI	CCGC	4 cut(s)	5, 237, 2020, 2156
AclI	AACGTT	1 cut(s)	628
AclWI	GGATC	4 cut(s)	8, 329, 404, 503
AcsI	RAATTY	4 cut(s)	362, 377, 1025, 1943
AcuI	CTGAAG	4 cut(s)	422, 936, 1499, 2213
AfaI	GTAC	7 cut(s)	518, 522, 578, 752, 1187, 2087, 2295
AfiI	CCNNNNNNNGG	5 cut(s)	84, 424, 935, 1165, 2173
AflII	CTTAAG	2 cut(s)	1685, 2039
AgeI	ACCGGT	1 cut(s)	2296
AjnI	CCWGG	2 cut(s)	83, 1346
AjuI	GAANNNNNNNTTGG	2 cut(s)	1428, 1460
AloI	GAACNNNNNNTCC	2 cut(s)	150, 182
Alw26I	GTCTC	2 cut(s)	96, 457
AlwI	GGATC	4 cut(s)	8, 329, 404, 503
Ama87I	CYCGRG	1 cut(s)	512
AoxI	GGCC	3 cut(s)	1609, 1701, 1927
ApaI	GGGCCC	1 cut(s)	1613
ApeKI	GCWGC	4 cut(s)	710, 962, 1232, 2213
ApoI	RAATTY	4 cut(s)	362, 377, 1025, 1943
AseI	ATTAAT	1 cut(s)	837
AsiGI	ACCGGT	1 cut(s)	2296
Asp700I	GAANNNNTTC	1 cut(s)	2286
Asp718I	GGTACC	1 cut(s)	2293
AspLEI	GCGC	1 cut(s)	1650
AspS9I	GGNCC	5 cut(s)	1057, 1385, 1609, 1610, 1826
AsuC2I	CCSGG	3 cut(s)	241, 265, 987
AsuHPI	GGTGA	5 cut(s)	40, 728, 1268, 1502, 2213
AvaI	CYCGRG	1 cut(s)	512
AvaII	GGWCC	3 cut(s)	1057, 1385, 1826
BaeGI	GKGCMC	2 cut(s)	1613, 1939
BanI	GGYRCC	1 cut(s)	2293
BanII	GRGCYC	2 cut(s)	669, 1613
BarI	GAAGNNNNNNTAC	2 cut(s)	894, 926
BbsI	GAAGAC	1 cut(s)	71
BbvI	GCAGC	4 cut(s)	697, 949, 1219, 2200
BccI	CCATC	4 cut(s)	105, 123, 350, 1345
BceAI	ACGGC	1 cut(s)	1485
BciT130I	CCWGG	2 cut(s)	85, 1348
BcnI	CCSGG	3 cut(s)	241, 265, 987
BcoDI	GTCTC	2 cut(s)	96, 457
BfaI	CTAG	5 cut(s)	287, 407, 497, 1113, 1118
BfmI	CTRYAG	5 cut(s)	591, 740, 1380, 1728, 1863
BfrI	CTTAAG	2 cut(s)	1685, 2039
BfuAI	ACCTGC	3 cut(s)	733, 747, 1244
BglII	AGATCT	1 cut(s)	729
BisI	GCNGC	4 cut(s)	711, 963, 1233, 2214
BlpI	GCTNAGC	1 cut(s)	1473
BlsI	GCNGC	4 cut(s)	712, 964, 1234, 2215
Bme1390I	CCNGG	5 cut(s)	85, 241, 265, 987, 1348
Bme18I	GGWCC	3 cut(s)	1057, 1385, 1826
BmeT110I	CYCGRG	1 cut(s)	512
BmgT120I	GGNCC	5 cut(s)	1057, 1385, 1609, 1610, 1826
BmiI	GGNNCC	3 cut(s)	1611, 2098, 2295
BmrFI	CCNGG	5 cut(s)	85, 241, 265, 987, 1348
BmrI	ACTGGG	1 cut(s)	945
BmsI	GCATC	8 cut(s)	298, 664, 784, 806, 1060, 1297, 1396, 2003
BmuI	ACTGGG	1 cut(s)	945
BpiI	GAAGAC	1 cut(s)	71
BplI	GAGNNNNNCTC	2 cut(s)	1346, 1378
BpmI	CTGGAG	2 cut(s)	202, 990
Bpu1102I	GCTNAGC	1 cut(s)	1473
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	3 cut(s)	241, 265, 987
BsaAI	YACGTR	1 cut(s)	520
BsaBI	GATNNNNATC	2 cut(s)	96, 114
BsaJI	CCNNGG	6 cut(s)	83, 84, 240, 848, 986, 1545
BsaWI	WCCGGW	2 cut(s)	2296, 2320
Bsc4I	CCNNNNNNNGG	5 cut(s)	84, 424, 935, 1165, 2173
Bse118I	RCCGGY	3 cut(s)	56, 68, 2296
Bse1I	ACTGG	6 cut(s)	219, 940, 1266, 1275, 1530, 2084
Bse3DI	GCAATG	1 cut(s)	2066
Bse8I	GATNNNNATC	2 cut(s)	96, 114
BseBI	CCWGG	2 cut(s)	85, 1348
BseDI	CCNNGG	6 cut(s)	83, 84, 240, 848, 986, 1545
BseGI	GGATG	6 cut(s)	730, 828, 1356, 1378, 1462, 2018
BseJI	GATNNNNATC	2 cut(s)	96, 114
BseLI	CCNNNNNNNGG	5 cut(s)	84, 424, 935, 1165, 2173
BseMI	GCAATG	1 cut(s)	2066
BseMII	CTCAG	8 cut(s)	909, 1350, 1487, 1710, 1908, 2037, 2159, 2319
BseNI	ACTGG	6 cut(s)	219, 940, 1266, 1275, 1530, 2084
BseRI	GAGGAG	2 cut(s)	296, 494
BseSI	GKGCMC	2 cut(s)	1613, 1939
BseXI	GCAGC	4 cut(s)	697, 949, 1219, 2200
BsgI	GTGCAG	1 cut(s)	2224
BshFI	GGCC	3 cut(s)	1611, 1703, 1929
BshNI	GGYRCC	1 cut(s)	2293
BshTI	ACCGGT	1 cut(s)	2296
BsiHKCI	CYCGRG	1 cut(s)	512
BsiSI	CCGG	8 cut(s)	57, 69, 240, 265, 986, 1596, 2297, 2321
BslFI	GGGAC	1 cut(s)	960
BslI	CCNNNNNNNGG	5 cut(s)	84, 424, 935, 1165, 2173
BsmAI	GTCTC	2 cut(s)	96, 457
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	960
BsmI	GAATGC	3 cut(s)	875, 965, 1814
BsnI	GGCC	3 cut(s)	1611, 1703, 1929
BsoBI	CYCGRG	1 cut(s)	512
Bsp120I	GGGCCC	1 cut(s)	1609
Bsp1286I	GDGCHC	3 cut(s)	669, 1613, 1939
Bsp1407I	TGTACA	2 cut(s)	1185, 2085
Bsp143I	GATC	6 cut(s)	13, 321, 409, 508, 729, 1660
Bsp1720I	GCTNAGC	1 cut(s)	1473
Bsp19I	CCATGG	1 cut(s)	848
BspACI	CCGC	4 cut(s)	5, 237, 2020, 2156
BspANI	GGCC	3 cut(s)	1611, 1703, 1929
BspCNI	CTCAG	8 cut(s)	908, 1349, 1486, 1709, 1907, 2036, 2160, 2320
BspLI	GGNNCC	3 cut(s)	1611, 2098, 2295
BspMAI	CTGCAG	1 cut(s)	744
BspMI	ACCTGC	3 cut(s)	733, 747, 1244
BspPI	GGATC	4 cut(s)	8, 329, 404, 503
BspQI	GCTCTTC	2 cut(s)	1034, 1967
BspT107I	GGYRCC	1 cut(s)	2293
BspTI	CTTAAG	2 cut(s)	1685, 2039
BsrBI	CCGCTC	1 cut(s)	2022
BsrDI	GCAATG	1 cut(s)	2066
BsrFI	RCCGGY	3 cut(s)	56, 68, 2296
BsrGI	TGTACA	2 cut(s)	1185, 2085
BsrI	ACTGG	6 cut(s)	219, 940, 1266, 1275, 1530, 2084
BssAI	RCCGGY	3 cut(s)	56, 68, 2296
BssECI	CCNNGG	6 cut(s)	83, 84, 240, 848, 986, 1545
BssMI	GATC	6 cut(s)	13, 321, 409, 508, 729, 1660
BssNAI	GTATAC	1 cut(s)	391
BssT1I	CCWWGG	2 cut(s)	848, 1545
Bst1107I	GTATAC	1 cut(s)	391
Bst2UI	CCWGG	2 cut(s)	85, 1348
Bst4CI	ACNGT	6 cut(s)	755, 1054, 1106, 1413, 1621, 1867
Bst6I	CTCTTC	5 cut(s)	273, 441, 1034, 1277, 1967
BstAFI	CTTAAG	2 cut(s)	1685, 2039
BstAPI	GCANNNNNTGC	1 cut(s)	160
BstAUI	TGTACA	2 cut(s)	1185, 2085
BstBAI	YACGTR	1 cut(s)	520
BstC8I	GCNNGC	3 cut(s)	152, 202, 789
BstDSI	CCRYGG	1 cut(s)	848
BstF5I	GGATG	6 cut(s)	730, 828, 1356, 1378, 1462, 2018
BstHHI	GCGC	1 cut(s)	1650
BstKTI	GATC	6 cut(s)	16, 324, 412, 511, 732, 1663
BstMAI	GTCTC	2 cut(s)	96, 457
BstMBI	GATC	6 cut(s)	13, 321, 409, 508, 729, 1660
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 896, 1809
BstNI	CCWGG	2 cut(s)	85, 1348
BstNSI	RCATGY	1 cut(s)	791
BstSCI	CCNGG	5 cut(s)	83, 239, 263, 985, 1346
BstSFI	CTRYAG	5 cut(s)	591, 740, 1380, 1728, 1863
BstSLI	GKGCMC	2 cut(s)	1613, 1939
BstSNI	TACGTA	1 cut(s)	520
BstV1I	GCAGC	4 cut(s)	697, 949, 1219, 2200
BstV2I	GAAGAC	1 cut(s)	71
BstX2I	RGATCY	4 cut(s)	321, 409, 508, 729
BstYI	RGATCY	4 cut(s)	321, 409, 508, 729
BstZ17I	GTATAC	1 cut(s)	391
BsuRI	GGCC	3 cut(s)	1611, 1703, 1929
BtgI	CCRYGG	1 cut(s)	848
BtgZI	GCGATG	1 cut(s)	1320
BtsCI	GGATG	6 cut(s)	730, 828, 1356, 1378, 1462, 2018
BtsI	GCAGTG	3 cut(s)	258, 608, 2236
BveI	ACCTGC	3 cut(s)	733, 747, 1244
Cac8I	GCNNGC	3 cut(s)	152, 202, 789
CfoI	GCGC	1 cut(s)	1650
Cfr10I	RCCGGY	3 cut(s)	56, 68, 2296
Cfr13I	GGNCC	5 cut(s)	1057, 1385, 1609, 1610, 1826
Csp6I	GTAC	7 cut(s)	517, 521, 577, 751, 1186, 2086, 2294
CspAI	ACCGGT	1 cut(s)	2296
CviQI	GTAC	7 cut(s)	517, 521, 577, 751, 1186, 2086, 2294
DpnI	GATC	6 cut(s)	15, 323, 411, 510, 731, 1662
DpnII	GATC	6 cut(s)	13, 321, 409, 508, 729, 1660
DraI	TTTAAA	1 cut(s)	1131
Eam1104I	CTCTTC	5 cut(s)	273, 441, 1034, 1277, 1967
EarI	CTCTTC	5 cut(s)	273, 441, 1034, 1277, 1967
EciI	GGCGGA	2 cut(s)	20, 226
Eco105I	TACGTA	1 cut(s)	520
Eco130I	CCWWGG	2 cut(s)	848, 1545
Eco24I	GRGCYC	2 cut(s)	669, 1613
Eco32I	GATATC	1 cut(s)	214
Eco47I	GGWCC	3 cut(s)	1057, 1385, 1826
Eco57I	CTGAAG	4 cut(s)	422, 936, 1499, 2213
Eco88I	CYCGRG	1 cut(s)	512
EcoO109I	RGGNCCY	2 cut(s)	1609, 1610
EcoRI	GAATTC	1 cut(s)	377
EcoRII	CCWGG	2 cut(s)	83, 1346
EcoRV	GATATC	1 cut(s)	214
EcoT14I	CCWWGG	2 cut(s)	848, 1545
EcoT22I	ATGCAT	2 cut(s)	313, 799
EcoT38I	GRGCYC	2 cut(s)	669, 1613
ErhI	CCWWGG	2 cut(s)	848, 1545
Esp3I	CGTCTC	1 cut(s)	96
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FaqI	GGGAC	1 cut(s)	960
FauNDI	CATATG	1 cut(s)	1399
FblI	GTMKAC	3 cut(s)	390, 1536, 1862
Fnu4HI	GCNGC	4 cut(s)	711, 963, 1233, 2214
FokI	GGATG	6 cut(s)	737, 835, 1363, 1385, 1469, 2025
FriOI	GRGCYC	2 cut(s)	669, 1613
Fsp4HI	GCNGC	4 cut(s)	711, 963, 1233, 2214
FspBI	CTAG	5 cut(s)	287, 407, 497, 1113, 1118
GlaI	GCGC	1 cut(s)	1649
GluI	GCNGC	4 cut(s)	711, 963, 1233, 2214
GsuI	CTGGAG	2 cut(s)	202, 990
HaeIII	GGCC	3 cut(s)	1611, 1703, 1929
HapII	CCGG	8 cut(s)	57, 69, 240, 265, 986, 1596, 2297, 2321
HhaI	GCGC	1 cut(s)	1650
Hin6I	GCGC	1 cut(s)	1648
HinP1I	GCGC	1 cut(s)	1648
HincII	GTYRAC	2 cut(s)	660, 2134
HindII	GTYRAC	2 cut(s)	660, 2134
HindIII	AAGCTT	2 cut(s)	490, 1481
HpaII	CCGG	8 cut(s)	57, 69, 240, 265, 986, 1596, 2297, 2321
HphI	GGTGA	5 cut(s)	40, 728, 1268, 1502, 2213
Hpy166II	GTNNAC	7 cut(s)	391, 660, 1057, 1188, 1537, 1863, 2134
Hpy188I	TCNGA	3 cut(s)	1339, 1699, 2232
Hpy8I	GTNNAC	7 cut(s)	391, 660, 1057, 1188, 1537, 1863, 2134
Hpy99I	CGWCG	2 cut(s)	44, 253
HpyAV	CCTTC	4 cut(s)	775, 937, 1792, 2144
HpyCH4III	ACNGT	6 cut(s)	755, 1054, 1106, 1413, 1621, 1867
HpyCH4IV	ACGT	4 cut(s)	42, 175, 519, 628
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 896, 1809
HpySE526I	ACGT	4 cut(s)	42, 175, 519, 628
HspAI	GCGC	1 cut(s)	1648
KpnI	GGTACC	1 cut(s)	2297
Kzo9I	GATC	6 cut(s)	13, 321, 409, 508, 729, 1660
LguI	GCTCTTC	2 cut(s)	1034, 1967
LmnI	GCTCC	8 cut(s)	271, 283, 640, 784, 1510, 1567, 1971, 2096
Lsp1109I	GCAGC	4 cut(s)	697, 949, 1219, 2200
LweI	GCATC	8 cut(s)	298, 664, 784, 806, 1060, 1297, 1396, 2003
MaeI	CTAG	5 cut(s)	287, 407, 497, 1113, 1118
MaeII	ACGT	4 cut(s)	42, 175, 519, 628
MaeIII	GTNAC	7 cut(s)	397, 606, 640, 931, 1256, 1375, 2201
MalI	GATC	6 cut(s)	15, 323, 411, 510, 731, 1662
MbiI	CCGCTC	1 cut(s)	2022
MboI	GATC	6 cut(s)	13, 321, 409, 508, 729, 1660
MfeI	CAATTG	1 cut(s)	551
MflI	RGATCY	4 cut(s)	321, 409, 508, 729
MhlI	GDGCHC	3 cut(s)	669, 1613, 1939
MlyI	GAGTC	5 cut(s)	853, 887, 1168, 1328, 1355
MmeI	TCCRAC	2 cut(s)	649, 1338
Mph1103I	ATGCAT	2 cut(s)	313, 799
MroXI	GAANNNNTTC	1 cut(s)	2286
MslI	CAYNNNNRTG	3 cut(s)	24, 792, 853
MspA1I	CMGCKG	2 cut(s)	899, 1477
MspCI	CTTAAG	2 cut(s)	1685, 2039
MspI	CCGG	8 cut(s)	57, 69, 240, 265, 986, 1596, 2297, 2321
MspR9I	CCNGG	5 cut(s)	85, 241, 265, 987, 1348
MunI	CAATTG	1 cut(s)	551
Mva1269I	GAATGC	3 cut(s)	875, 965, 1814
MvaI	CCWGG	2 cut(s)	85, 1348
MwoI	GCNNNNNNNGC	3 cut(s)	160, 896, 1809
NciI	CCSGG	3 cut(s)	241, 265, 987
NcoI	CCATGG	1 cut(s)	848
NdeI	CATATG	1 cut(s)	1399
NdeII	GATC	6 cut(s)	13, 321, 409, 508, 729, 1660
NlaIV	GGNNCC	3 cut(s)	1611, 2098, 2295
NmuCI	GTSAC	4 cut(s)	606, 1256, 1375, 2201
NsiI	ATGCAT	2 cut(s)	313, 799
NspI	RCATGY	1 cut(s)	791
PacI	TTAATTAA	1 cut(s)	837
PaeI	GCATGC	1 cut(s)	791
PaqCI	CACCTGC	3 cut(s)	733, 747, 1244
PasI	CCCWGGG	1 cut(s)	84
PciSI	GCTCTTC	2 cut(s)	1034, 1967
PctI	GAATGC	3 cut(s)	875, 965, 1814
PdmI	GAANNNNTTC	1 cut(s)	2286
PfeI	GAWTC	7 cut(s)	191, 245, 1109, 1121, 1778, 2110, 2341
PflFI	GACNNNGTC	1 cut(s)	1532
PflMI	CCANNNNNTGG	1 cut(s)	1165
PinAI	ACCGGT	1 cut(s)	2296
PkrI	GCNGC	4 cut(s)	712, 964, 1234, 2215
PleI	GAGTC	5 cut(s)	852, 887, 1168, 1328, 1355
PpsI	GAGTC	5 cut(s)	852, 887, 1168, 1328, 1355
Ppu21I	YACGTR	1 cut(s)	520
PshBI	ATTAAT	1 cut(s)	837
Psp1406I	AACGTT	1 cut(s)	628
Psp6I	CCWGG	2 cut(s)	83, 1346
PspGI	CCWGG	2 cut(s)	83, 1346
PspN4I	GGNNCC	3 cut(s)	1611, 2098, 2295
PspOMI	GGGCCC	1 cut(s)	1609
PspPI	GGNCC	5 cut(s)	1057, 1385, 1609, 1610, 1826
PstI	CTGCAG	1 cut(s)	744
PsuI	RGATCY	4 cut(s)	321, 409, 508, 729
PsyI	GACNNNGTC	1 cut(s)	1532
PvuII	CAGCTG	2 cut(s)	899, 1477
RsaI	GTAC	7 cut(s)	518, 522, 578, 752, 1187, 2087, 2295
RsaNI	GTAC	7 cut(s)	517, 521, 577, 751, 1186, 2086, 2294
RseI	CAYNNNNRTG	3 cut(s)	24, 792, 853
SapI	GCTCTTC	2 cut(s)	1034, 1967
SatI	GCNGC	4 cut(s)	711, 963, 1233, 2214
Sau3AI	GATC	6 cut(s)	13, 321, 409, 508, 729, 1660
Sau96I	GGNCC	5 cut(s)	1057, 1385, 1609, 1610, 1826
SbfI	CCTGCAGG	1 cut(s)	744
SchI	GAGTC	5 cut(s)	853, 887, 1168, 1328, 1355
ScrFI	CCNGG	5 cut(s)	85, 241, 265, 987, 1348
SdaI	CCTGCAGG	1 cut(s)	744
SduI	GDGCHC	3 cut(s)	669, 1613, 1939
SfaNI	GCATC	8 cut(s)	298, 664, 784, 806, 1060, 1297, 1396, 2003
SfcI	CTRYAG	5 cut(s)	591, 740, 1380, 1728, 1863
SinI	GGWCC	3 cut(s)	1057, 1385, 1826
SmiMI	CAYNNNNRTG	3 cut(s)	24, 792, 853
SmlI	CTYRAG	3 cut(s)	422, 1685, 2039
SmoI	CTYRAG	3 cut(s)	422, 1685, 2039
SnaBI	TACGTA	1 cut(s)	520
SphI	GCATGC	1 cut(s)	791
Sse8387I	CCTGCAGG	1 cut(s)	744
SsiI	CCGC	4 cut(s)	5, 237, 2020, 2156
SspMI	CTAG	5 cut(s)	287, 407, 497, 1113, 1118
StyD4I	CCNGG	5 cut(s)	83, 239, 263, 985, 1346
StyI	CCWWGG	2 cut(s)	848, 1545
TaaI	ACNGT	6 cut(s)	755, 1054, 1106, 1413, 1621, 1867
TaiI	ACGT	4 cut(s)	45, 178, 522, 631
TaqI	TCGA	8 cut(s)	12, 39, 100, 118, 598, 1172, 1570, 1663
TaqII	GACCGA	1 cut(s)	2024
TatI	WGTACW	2 cut(s)	1185, 2085
TfiI	GAWTC	7 cut(s)	191, 245, 1109, 1121, 1778, 2110, 2341
TseFI	GTSAC	4 cut(s)	606, 1256, 1375, 2201
TseI	GCWGC	4 cut(s)	710, 962, 1232, 2213
Tsp45I	GTSAC	4 cut(s)	606, 1256, 1375, 2201
TspDTI	ATGAA	8 cut(s)	42, 116, 355, 390, 879, 1416, 1821, 2133
TspGWI	ACGGA	2 cut(s)	586, 1037
Tth111I	GACNNNGTC	1 cut(s)	1532
Van91I	CCANNNNNTGG	1 cut(s)	1165
Vha464I	CTTAAG	2 cut(s)	1685, 2039
VpaK11BI	GGWCC	3 cut(s)	1057, 1385, 1826
VspI	ATTAAT	1 cut(s)	837
XapI	RAATTY	4 cut(s)	362, 377, 1025, 1943
XbaI	TCTAGA	2 cut(s)	406, 1117
XceI	RCATGY	1 cut(s)	791
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2320
XmiI	GTMKAC	3 cut(s)	390, 1536, 1862
XmnI	GAANNNNTTC	1 cut(s)	2286
XspI	CTAG	5 cut(s)	287, 407, 497, 1113, 1118
Zsp2I	ATGCAT	2 cut(s)	313, 799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.