Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009385

Physical Location & Seq

Genomic Coordinates Forward (+)

45111483 .. 45123886

Gene Structure 12404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG339000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2058 bp

ATGGCGGAAGTCGATCCTCATATCCATGAAGAACACTTCGACGTTCTCACCAGGACCGGCCAGAAGACCGGCACTTCCAAGCCCAGGGGAGATGTCCATCGAGACGGGGATTACCACCGAGCTGTTCATGTCTGGATTTTCGCCGAAAGCACGCAAGAACTGCTTATCCAGAAACGTGCTGACTTCAAGGATTCCTTTGCCGGCTTGTGGGACATCTCCAGTGCTGGACACATATCCGCCGGCGATTCGTCGCTTATCACTGCCCGGAGGGAGCTTGAAGAGGAGCTAGGTATAATACTTCCAAAAGATGCATTTGAAATGATCTTCGTATTTCTTCAAGAGTGTGTAATAAATGATGGAAAATTCATCAATAATGAATTCAATGATGTATACTTGGTTACAACTCTAGATCCTATCCCTCTGGAGGCATTTACTCTTCAGGAAACAGAAGTCTCTGCTGTTAAATATATTTCTTATGAGGAGTATAAAAGCTTACTAGCTAAAGAAGATCCCGAGTACGTACCCTATGATGTAAATGGGCAGTATGGTCAATTGTTTGACATAATTGCACGGAGGTACAAGGAGAACACTACAGCTCGAAGTTTGTCACTGCAAAAGCAACTCCAACGTTATGCTCCTGTTACCCTCAATCCAGAGTTGACAGGGCTCACAGATGCAGATAAGGAGGCTCTTGTTATACTTGTTAAGGCTGCAACTATTTTGGATGAGATCTTTCACCTGCAGGTGTGGTACAGTAATCCAGCTCTAAGAGATTGGTTGAAGGAGCATGCAGATGCATCACAAATGGACAACTTGAAATGGATGTATTATTTAATTAATAAGAGTCCATGGTCGTGCCTTGATGAAAATGAGGCATTTTTGACAACTGCAGACTCAGCTGTACAGTTGCTTCCTGAAGCAACGAAGCCTGTTACTGGTTGGAAGGGACTTGAATATAGAGCTGCATTTCCTATGCTAAAACCACCGGGGGCAAACTTCTATCCTCCAGACATGGACAAAACGGAATTTGAATTTTGGAAGAGTAGTCTAACAGTGGACCAACAAGAGGATGCAACAGGCTTTTTCAATGTTATTAAAAGACACAGTGAATCTAGTCTAGATTCCACTTTAAATGGTAATACATTTGGAAGCAAAAACCATTCTGTGGGTTCGACTCCTGACTTGTACACTATCCCTTTCTCCCAAGAGTATAATACTTTCCTCACACAAGCTGCTGAATTATTGCATAAAGCAGGTGACTTGACCAGTTCACCTAGTTTGAAGAGGTTGCTTCACAGCAAGGGCGATGCTTTCCTATCAAATGATTACTATGACTCAGATATAGCCTGGATGGAGTTGGACTCTAAGCTGGATGTCACTATAGGTCCATACGAAACATATGAAGATGCACTGTTCGGGTATAAGGCTACATTTGAAGCATTTATTGGAGTTCGGGATGACAAAGCAACGGCTCAGCTAAAACTTTTTGGTGATAACTTGCAGTTTTTGGAGCAAAATCTCCCACTGGACGATGTCTACAAGTCCAAGGAAGTGATTTCTGCTCCTATTCGAGTTATCGAGCTTCTATATAATGCCGGAGATGTAAAGGGCCCTCAAACTGTTGCTTTCAATCTACCAAATGATGAGCGCATTGTAAAAGATCGAGGAACATCTATGGTCATGCTTAAGAATATCTCAGAGGCCAAGTTCAAACATATTCTTCTGCCTATAGCTGATGTTTGTATTACAAAGGAACAACAAGGACTTGTAGATTTTGAATCCTTCTTCACTCACACAATTTGCCATGAATGCTGTCATGGGATTGGACCTCATACCATAACACTTCCAAGTGGTAGAAAGTCTACAGTGAGATTGGAACTGCAAGAACTCCACTCAGCTTTGGAAGAAGCAAAAGCTGATATAGTTGGCCTTTGGGCACTGAAATTCCTAATCCACAAGGAACTGCTCCCGAAGAGCTTATTGAAATCCATGTATGTTTCTTTTCTTGCTGGATGCTTCCGCTCAGTTCGTTTCGGTCTTAAGGAAGCTCATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0016787 GO:0019538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX Peptidase_M49

Protein Analysis

685

Amino Acids

77.46

Weight (kDa)

5.07

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	38 - 172	1.3e-14	NUDIX domain
Peptidase_M49	PF03571	403 - 609	2.7e-08	Peptidase family M49

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79690 AT1G79690
fragaria_vesca	FvH4_6g28160 FvH4_6g28160 FvH4_6g28160 FvH4_6g28160 FvH4_6g28160 FvH4_6g28160
malus_domestica	MD17G1227300.v1.1
prunus_persica	Prupe.3G104700_v2.0.a1
pyrus_communis	pycom17g23060
rosa_chinensis	RchiOBHm_Chr2g0132121
rosa_laevigata	RLG00000019229
rosa_multiflora	Rmu_sc0002005.1_g000003 Rmu_sc0009538.1_g000018 Rmu_sc0033552.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112380
rosa_rugosa	Rorug02G0302400
rosa_samantha	Rh2AG355500 Rh2BG361600 Rh2CG339000
rosa_wichuraiana	Rw2G028860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	733, 747, 1244
Acc36I	ACCTGC	3 cut(s)	733, 747, 1244
AccB7I	CCANNNNNTGG	1 cut(s)	1165
AccBSI	CCGCTC	1 cut(s)	2022
AccI	GTMKAC	3 cut(s)	390, 1536, 1862
AciI	CCGC	3 cut(s)	5, 237, 2020
AclI	AACGTT	1 cut(s)	628
AclWI	GGATC	3 cut(s)	8, 404, 503
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	5 cut(s)	362, 377, 1025, 1031, 1943
AcuI	CTGAAG	2 cut(s)	422, 936
AfaI	GTAC	6 cut(s)	518, 522, 578, 752, 903, 1187
AfiI	CCNNNNNNNGG	6 cut(s)	84, 207, 424, 935, 1066, 1165
AflII	CTTAAG	2 cut(s)	1685, 2039
AjnI	CCWGG	3 cut(s)	50, 83, 1346
AjuI	GAANNNNNNNTTGG	2 cut(s)	1428, 1460
AloI	GAACNNNNNNTCC	2 cut(s)	150, 182
Alw26I	GTCTC	2 cut(s)	96, 457
AlwI	GGATC	3 cut(s)	8, 404, 503
Ama87I	CYCGRG	1 cut(s)	512
AoxI	GGCC	4 cut(s)	58, 1609, 1701, 1927
ApaI	GGGCCC	1 cut(s)	1613
ApeKI	GCWGC	3 cut(s)	710, 962, 1232
ApoI	RAATTY	5 cut(s)	362, 377, 1025, 1031, 1943
AseI	ATTAAT	1 cut(s)	837
AspLEI	GCGC	1 cut(s)	1650
AspS9I	GGNCC	6 cut(s)	54, 1057, 1385, 1609, 1610, 1826
AsuC2I	CCSGG	2 cut(s)	265, 987
AsuHPI	GGTGA	5 cut(s)	40, 728, 1263, 1268, 1502
AvaI	CYCGRG	1 cut(s)	512
AvaII	GGWCC	4 cut(s)	54, 1057, 1385, 1826
BaeGI	GKGCMC	2 cut(s)	1613, 1939
BanII	GRGCYC	2 cut(s)	669, 1613
BarI	GAAGNNNNNNTAC	2 cut(s)	894, 926
BbsI	GAAGAC	1 cut(s)	71
BbvI	GCAGC	3 cut(s)	697, 949, 1219
BccI	CCATC	3 cut(s)	105, 350, 1345
BceAI	ACGGC	1 cut(s)	1485
BciT130I	CCWGG	3 cut(s)	52, 85, 1348
BcnI	CCSGG	2 cut(s)	265, 987
BcoDI	GTCTC	2 cut(s)	96, 457
BfaI	CTAG	6 cut(s)	287, 407, 497, 1113, 1118, 1275
BfmI	CTRYAG	6 cut(s)	591, 740, 888, 1380, 1728, 1863
BfrI	CTTAAG	2 cut(s)	1685, 2039
BfuAI	ACCTGC	3 cut(s)	733, 747, 1244
BglII	AGATCT	1 cut(s)	729
BisI	GCNGC	3 cut(s)	711, 963, 1233
BlpI	GCTNAGC	1 cut(s)	1473
BlsI	GCNGC	3 cut(s)	712, 964, 1234
Bme1390I	CCNGG	5 cut(s)	52, 85, 265, 987, 1348
Bme18I	GGWCC	4 cut(s)	54, 1057, 1385, 1826
BmeT110I	CYCGRG	1 cut(s)	512
BmgT120I	GGNCC	6 cut(s)	54, 1057, 1385, 1609, 1610, 1826
BmiI	GGNNCC	1 cut(s)	1611
BmrFI	CCNGG	5 cut(s)	52, 85, 265, 987, 1348
BmsI	GCATC	8 cut(s)	298, 664, 784, 806, 1060, 1297, 1396, 2003
BpiI	GAAGAC	1 cut(s)	71
BplI	GAGNNNNNCTC	2 cut(s)	1346, 1378
BpmI	CTGGAG	3 cut(s)	202, 443, 990
Bpu1102I	GCTNAGC	1 cut(s)	1473
BpuMI	CCSGG	2 cut(s)	265, 987
BsaAI	YACGTR	1 cut(s)	520
BsaBI	GATNNNNATC	1 cut(s)	96
BsaJI	CCNNGG	5 cut(s)	83, 84, 848, 986, 1545
Bsc4I	CCNNNNNNNGG	6 cut(s)	84, 207, 424, 935, 1066, 1165
Bse118I	RCCGGY	4 cut(s)	56, 68, 200, 239
Bse1I	ACTGG	4 cut(s)	219, 940, 1266, 1530
Bse8I	GATNNNNATC	1 cut(s)	96
BseBI	CCWGG	3 cut(s)	52, 85, 1348
BseDI	CCNNGG	5 cut(s)	83, 84, 848, 986, 1545
BseGI	GGATG	7 cut(s)	730, 828, 1075, 1356, 1378, 1462, 2018
BseJI	GATNNNNATC	1 cut(s)	96
BseLI	CCNNNNNNNGG	6 cut(s)	84, 207, 424, 935, 1066, 1165
BseMII	CTCAG	6 cut(s)	909, 1350, 1487, 1710, 1908, 2037
BseNI	ACTGG	4 cut(s)	219, 940, 1266, 1530
BseRI	GAGGAG	2 cut(s)	296, 494
BseSI	GKGCMC	2 cut(s)	1613, 1939
BseXI	GCAGC	3 cut(s)	697, 949, 1219
BshFI	GGCC	4 cut(s)	60, 1611, 1703, 1929
BsiHKCI	CYCGRG	1 cut(s)	512
BsiSI	CCGG	7 cut(s)	57, 69, 201, 240, 265, 986, 1596
BslFI	GGGAC	2 cut(s)	224, 960
BslI	CCNNNNNNNGG	6 cut(s)	84, 207, 424, 935, 1066, 1165
BsmAI	GTCTC	2 cut(s)	96, 457
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	2 cut(s)	224, 960
BsmI	GAATGC	1 cut(s)	1814
BsnI	GGCC	4 cut(s)	60, 1611, 1703, 1929
BsoBI	CYCGRG	1 cut(s)	512
Bsp120I	GGGCCC	1 cut(s)	1609
Bsp1286I	GDGCHC	3 cut(s)	669, 1613, 1939
Bsp1407I	TGTACA	2 cut(s)	901, 1185
Bsp143I	GATC	6 cut(s)	13, 321, 409, 508, 729, 1660
Bsp1720I	GCTNAGC	1 cut(s)	1473
Bsp19I	CCATGG	1 cut(s)	848
BspACI	CCGC	3 cut(s)	5, 237, 2020
BspANI	GGCC	4 cut(s)	60, 1611, 1703, 1929
BspCNI	CTCAG	6 cut(s)	908, 1349, 1486, 1709, 1907, 2036
BspLI	GGNNCC	1 cut(s)	1611
BspMAI	CTGCAG	2 cut(s)	744, 892
BspMI	ACCTGC	3 cut(s)	733, 747, 1244
BspPI	GGATC	3 cut(s)	8, 404, 503
BspQI	GCTCTTC	1 cut(s)	1967
BspTI	CTTAAG	2 cut(s)	1685, 2039
BsrBI	CCGCTC	1 cut(s)	2022
BsrFI	RCCGGY	4 cut(s)	56, 68, 200, 239
BsrGI	TGTACA	2 cut(s)	901, 1185
BsrI	ACTGG	4 cut(s)	219, 940, 1266, 1530
BssAI	RCCGGY	4 cut(s)	56, 68, 200, 239
BssECI	CCNNGG	5 cut(s)	83, 84, 848, 986, 1545
BssMI	GATC	6 cut(s)	13, 321, 409, 508, 729, 1660
BssNAI	GTATAC	1 cut(s)	391
BssT1I	CCWWGG	2 cut(s)	848, 1545
Bst1107I	GTATAC	1 cut(s)	391
Bst2UI	CCWGG	3 cut(s)	52, 85, 1348
Bst4CI	ACNGT	7 cut(s)	755, 906, 1054, 1106, 1413, 1621, 1867
Bst6I	CTCTTC	5 cut(s)	273, 441, 1034, 1277, 1967
BstAFI	CTTAAG	2 cut(s)	1685, 2039
BstAPI	GCANNNNNTGC	1 cut(s)	160
BstAUI	TGTACA	2 cut(s)	901, 1185
BstBAI	YACGTR	1 cut(s)	520
BstC8I	GCNNGC	4 cut(s)	152, 202, 241, 789
BstDEI	CTNAG	8 cut(s)	767, 895, 1336, 1365, 1473, 1696, 1894, 2023
BstDSI	CCRYGG	1 cut(s)	848
BstF5I	GGATG	7 cut(s)	730, 828, 1075, 1356, 1378, 1462, 2018
BstHHI	GCGC	1 cut(s)	1650
BstKTI	GATC	6 cut(s)	16, 324, 412, 511, 732, 1663
BstMAI	GTCTC	2 cut(s)	96, 457
BstMBI	GATC	6 cut(s)	13, 321, 409, 508, 729, 1660
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 896, 1809
BstNI	CCWGG	3 cut(s)	52, 85, 1348
BstNSI	RCATGY	1 cut(s)	791
BstSCI	CCNGG	5 cut(s)	50, 83, 263, 985, 1346
BstSFI	CTRYAG	6 cut(s)	591, 740, 888, 1380, 1728, 1863
BstSLI	GKGCMC	2 cut(s)	1613, 1939
BstSNI	TACGTA	1 cut(s)	520
BstV1I	GCAGC	3 cut(s)	697, 949, 1219
BstV2I	GAAGAC	1 cut(s)	71
BstX2I	RGATCY	3 cut(s)	409, 508, 729
BstYI	RGATCY	3 cut(s)	409, 508, 729
BstZ17I	GTATAC	1 cut(s)	391
BsuRI	GGCC	4 cut(s)	60, 1611, 1703, 1929
BtgI	CCRYGG	1 cut(s)	848
BtgZI	GCGATG	1 cut(s)	1320
BtsCI	GGATG	7 cut(s)	730, 828, 1075, 1356, 1378, 1462, 2018
BtsI	GCAGTG	2 cut(s)	258, 608
BtsIMutI	CAGTG	9 cut(s)	226, 258, 608, 1059, 1111, 1409, 1523, 1872, 1937
BveI	ACCTGC	3 cut(s)	733, 747, 1244
Cac8I	GCNNGC	4 cut(s)	152, 202, 241, 789
CfoI	GCGC	1 cut(s)	1650
Cfr10I	RCCGGY	4 cut(s)	56, 68, 200, 239
Cfr13I	GGNCC	6 cut(s)	54, 1057, 1385, 1609, 1610, 1826
Csp6I	GTAC	6 cut(s)	517, 521, 577, 751, 902, 1186
CviQI	GTAC	6 cut(s)	517, 521, 577, 751, 902, 1186
DdeI	CTNAG	8 cut(s)	767, 895, 1336, 1365, 1473, 1696, 1894, 2023
DpnI	GATC	6 cut(s)	15, 323, 411, 510, 731, 1662
DpnII	GATC	6 cut(s)	13, 321, 409, 508, 729, 1660
DraI	TTTAAA	1 cut(s)	1131
EaeI	YGGCCR	1 cut(s)	58
Eam1104I	CTCTTC	5 cut(s)	273, 441, 1034, 1277, 1967
EarI	CTCTTC	5 cut(s)	273, 441, 1034, 1277, 1967
EciI	GGCGGA	2 cut(s)	20, 226
Eco105I	TACGTA	1 cut(s)	520
Eco130I	CCWWGG	2 cut(s)	848, 1545
Eco24I	GRGCYC	2 cut(s)	669, 1613
Eco47I	GGWCC	4 cut(s)	54, 1057, 1385, 1826
Eco57I	CTGAAG	2 cut(s)	422, 936
Eco88I	CYCGRG	1 cut(s)	512
EcoO109I	RGGNCCY	2 cut(s)	1609, 1610
EcoRI	GAATTC	1 cut(s)	377
EcoRII	CCWGG	3 cut(s)	50, 83, 1346
EcoT14I	CCWWGG	2 cut(s)	848, 1545
EcoT22I	ATGCAT	2 cut(s)	313, 799
EcoT38I	GRGCYC	2 cut(s)	669, 1613
ErhI	CCWWGG	2 cut(s)	848, 1545
Esp3I	CGTCTC	1 cut(s)	96
FalI	AAGNNNNNCTT	4 cut(s)	147, 179, 179, 211
FaqI	GGGAC	2 cut(s)	224, 960
FauNDI	CATATG	1 cut(s)	1399
FblI	GTMKAC	3 cut(s)	390, 1536, 1862
Fnu4HI	GCNGC	3 cut(s)	711, 963, 1233
FokI	GGATG	7 cut(s)	737, 835, 1082, 1363, 1385, 1469, 2025
FriOI	GRGCYC	2 cut(s)	669, 1613
Fsp4HI	GCNGC	3 cut(s)	711, 963, 1233
FspBI	CTAG	6 cut(s)	287, 407, 497, 1113, 1118, 1275
GlaI	GCGC	1 cut(s)	1649
GluI	GCNGC	3 cut(s)	711, 963, 1233
GsuI	CTGGAG	3 cut(s)	202, 443, 990
HaeIII	GGCC	4 cut(s)	60, 1611, 1703, 1929
HapII	CCGG	7 cut(s)	57, 69, 201, 240, 265, 986, 1596
HhaI	GCGC	1 cut(s)	1650
Hin6I	GCGC	1 cut(s)	1648
HinP1I	GCGC	1 cut(s)	1648
HincII	GTYRAC	1 cut(s)	660
HindII	GTYRAC	1 cut(s)	660
HindIII	AAGCTT	1 cut(s)	490
HpaII	CCGG	7 cut(s)	57, 69, 201, 240, 265, 986, 1596
HphI	GGTGA	5 cut(s)	40, 728, 1263, 1268, 1502
Hpy166II	GTNNAC	7 cut(s)	391, 660, 1057, 1188, 1271, 1537, 1863
Hpy188I	TCNGA	2 cut(s)	1339, 1699
Hpy8I	GTNNAC	7 cut(s)	391, 660, 1057, 1188, 1271, 1537, 1863
Hpy99I	CGWCG	2 cut(s)	44, 253
HpyAV	CCTTC	3 cut(s)	775, 937, 1792
HpyCH4III	ACNGT	7 cut(s)	755, 906, 1054, 1106, 1413, 1621, 1867
HpyCH4IV	ACGT	4 cut(s)	42, 175, 519, 628
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 896, 1809
HpyF3I	CTNAG	8 cut(s)	767, 895, 1336, 1365, 1473, 1696, 1894, 2023
HpySE526I	ACGT	4 cut(s)	42, 175, 519, 628
HspAI	GCGC	1 cut(s)	1648
KroI	GCCGGC	2 cut(s)	200, 239
KroNI	GCCGGC	2 cut(s)	202, 241
Kzo9I	GATC	6 cut(s)	13, 321, 409, 508, 729, 1660
LguI	GCTCTTC	1 cut(s)	1967
LmnI	GCTCC	7 cut(s)	271, 283, 640, 784, 1510, 1567, 1971
Lsp1109I	GCAGC	3 cut(s)	697, 949, 1219
LweI	GCATC	8 cut(s)	298, 664, 784, 806, 1060, 1297, 1396, 2003
MaeI	CTAG	6 cut(s)	287, 407, 497, 1113, 1118, 1275
MaeII	ACGT	4 cut(s)	42, 175, 519, 628
MaeIII	GTNAC	6 cut(s)	397, 606, 640, 931, 1256, 1375
MalI	GATC	6 cut(s)	15, 323, 411, 510, 731, 1662
MbiI	CCGCTC	1 cut(s)	2022
MboI	GATC	6 cut(s)	13, 321, 409, 508, 729, 1660
MfeI	CAATTG	1 cut(s)	551
MflI	RGATCY	3 cut(s)	409, 508, 729
MhlI	GDGCHC	3 cut(s)	669, 1613, 1939
MlyI	GAGTC	5 cut(s)	853, 887, 1168, 1328, 1355
MmeI	TCCRAC	3 cut(s)	649, 920, 1338
Mph1103I	ATGCAT	2 cut(s)	313, 799
MreI	CGCCGGCG	1 cut(s)	239
MroNI	GCCGGC	2 cut(s)	200, 239
MseI	TTAA	8 cut(s)	462, 705, 833, 837, 1095, 1130, 1686, 2040
MslI	CAYNNNNRTG	3 cut(s)	24, 792, 853
MspA1I	CMGCKG	1 cut(s)	899
MspCI	CTTAAG	2 cut(s)	1685, 2039
MspI	CCGG	7 cut(s)	57, 69, 201, 240, 265, 986, 1596
MspR9I	CCNGG	5 cut(s)	52, 85, 265, 987, 1348
MunI	CAATTG	1 cut(s)	551
Mva1269I	GAATGC	1 cut(s)	1814
MvaI	CCWGG	3 cut(s)	52, 85, 1348
MwoI	GCNNNNNNNGC	3 cut(s)	160, 896, 1809
NaeI	GCCGGC	2 cut(s)	202, 241
NciI	CCSGG	2 cut(s)	265, 987
NcoI	CCATGG	1 cut(s)	848
NdeI	CATATG	1 cut(s)	1399
NdeII	GATC	6 cut(s)	13, 321, 409, 508, 729, 1660
NgoMIV	GCCGGC	2 cut(s)	200, 239
NlaIV	GGNNCC	1 cut(s)	1611
NmuCI	GTSAC	3 cut(s)	606, 1256, 1375
NsiI	ATGCAT	2 cut(s)	313, 799
NspI	RCATGY	1 cut(s)	791
PacI	TTAATTAA	1 cut(s)	837
PaeI	GCATGC	1 cut(s)	791
PaqCI	CACCTGC	3 cut(s)	733, 747, 1244
PasI	CCCWGGG	1 cut(s)	84
PciSI	GCTCTTC	1 cut(s)	1967
PctI	GAATGC	1 cut(s)	1814
PdiI	GCCGGC	2 cut(s)	202, 241
PfeI	GAWTC	5 cut(s)	191, 245, 1109, 1121, 1778
PflFI	GACNNNGTC	1 cut(s)	1532
PflMI	CCANNNNNTGG	1 cut(s)	1165
PkrI	GCNGC	3 cut(s)	712, 964, 1234
PleI	GAGTC	5 cut(s)	852, 887, 1168, 1328, 1355
PpsI	GAGTC	5 cut(s)	852, 887, 1168, 1328, 1355
Ppu21I	YACGTR	1 cut(s)	520
PshBI	ATTAAT	1 cut(s)	837
Psp1406I	AACGTT	1 cut(s)	628
Psp6I	CCWGG	3 cut(s)	50, 83, 1346
PspGI	CCWGG	3 cut(s)	50, 83, 1346
PspN4I	GGNNCC	1 cut(s)	1611
PspOMI	GGGCCC	1 cut(s)	1609
PspPI	GGNCC	6 cut(s)	54, 1057, 1385, 1609, 1610, 1826
PstI	CTGCAG	2 cut(s)	744, 892
PsuI	RGATCY	3 cut(s)	409, 508, 729
PsyI	GACNNNGTC	1 cut(s)	1532
PvuII	CAGCTG	1 cut(s)	899
RsaI	GTAC	6 cut(s)	518, 522, 578, 752, 903, 1187
RsaNI	GTAC	6 cut(s)	517, 521, 577, 751, 902, 1186
RseI	CAYNNNNRTG	3 cut(s)	24, 792, 853
SapI	GCTCTTC	1 cut(s)	1967
SaqAI	TTAA	8 cut(s)	462, 705, 833, 837, 1095, 1130, 1686, 2040
SatI	GCNGC	3 cut(s)	711, 963, 1233
Sau3AI	GATC	6 cut(s)	13, 321, 409, 508, 729, 1660
Sau96I	GGNCC	6 cut(s)	54, 1057, 1385, 1609, 1610, 1826
SbfI	CCTGCAGG	1 cut(s)	744
SchI	GAGTC	5 cut(s)	853, 887, 1168, 1328, 1355
ScrFI	CCNGG	5 cut(s)	52, 85, 265, 987, 1348
SdaI	CCTGCAGG	1 cut(s)	744
SduI	GDGCHC	3 cut(s)	669, 1613, 1939
SfaNI	GCATC	8 cut(s)	298, 664, 784, 806, 1060, 1297, 1396, 2003
SfcI	CTRYAG	6 cut(s)	591, 740, 888, 1380, 1728, 1863
SgrAI	CRCCGGYG	1 cut(s)	239
SinI	GGWCC	4 cut(s)	54, 1057, 1385, 1826
SmiMI	CAYNNNNRTG	3 cut(s)	24, 792, 853
SmlI	CTYRAG	2 cut(s)	1685, 2039
SmoI	CTYRAG	2 cut(s)	1685, 2039
SnaBI	TACGTA	1 cut(s)	520
SphI	GCATGC	1 cut(s)	791
Sse8387I	CCTGCAGG	1 cut(s)	744
SsiI	CCGC	3 cut(s)	5, 237, 2020
SspMI	CTAG	6 cut(s)	287, 407, 497, 1113, 1118, 1275
StyD4I	CCNGG	5 cut(s)	50, 83, 263, 985, 1346
StyI	CCWWGG	2 cut(s)	848, 1545
TaaI	ACNGT	7 cut(s)	755, 906, 1054, 1106, 1413, 1621, 1867
TaiI	ACGT	4 cut(s)	45, 178, 522, 631
TaqI	TCGA	8 cut(s)	12, 39, 100, 598, 1172, 1570, 1578, 1663
TaqII	GACCGA	1 cut(s)	2024
TatI	WGTACW	2 cut(s)	901, 1185
TfiI	GAWTC	5 cut(s)	191, 245, 1109, 1121, 1778
Tru1I	TTAA	8 cut(s)	462, 705, 833, 837, 1095, 1130, 1686, 2040
Tru9I	TTAA	8 cut(s)	462, 705, 833, 837, 1095, 1130, 1686, 2040
TscAI	CASTG	9 cut(s)	226, 265, 615, 1059, 1111, 1416, 1530, 1872, 1944
TseFI	GTSAC	3 cut(s)	606, 1256, 1375
TseI	GCWGC	3 cut(s)	710, 962, 1232
Tsp45I	GTSAC	3 cut(s)	606, 1256, 1375
TspDTI	ATGAA	7 cut(s)	42, 116, 355, 390, 879, 1416, 1821
TspGWI	ACGGA	2 cut(s)	586, 1037
TspRI	CASTG	9 cut(s)	226, 265, 615, 1059, 1111, 1416, 1530, 1872, 1944
Tth111I	GACNNNGTC	1 cut(s)	1532
Van91I	CCANNNNNTGG	1 cut(s)	1165
Vha464I	CTTAAG	2 cut(s)	1685, 2039
VpaK11BI	GGWCC	4 cut(s)	54, 1057, 1385, 1826
VspI	ATTAAT	1 cut(s)	837
XapI	RAATTY	5 cut(s)	362, 377, 1025, 1031, 1943
XbaI	TCTAGA	2 cut(s)	406, 1117
XceI	RCATGY	1 cut(s)	791
XmiI	GTMKAC	3 cut(s)	390, 1536, 1862
XspI	CTAG	6 cut(s)	287, 407, 497, 1113, 1118, 1275
Zsp2I	ATGCAT	2 cut(s)	313, 799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.