Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002005.1

Orthogroup ID

OG0009385

Physical Location & Seq

Genomic Coordinates Forward (+)

20551 .. 21381

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002005.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atgtatgcttcttttcttgctggatgcttccactcagtttgtttcggtcttcaggaagctcatggaaaaggacaagcattgcagtttaactggttgtacaagcaaggagcctttattttgaatcctgatgaaacattttctgttgactttgataaggttgaaggtgcggttgagagcctgagtagggagatacttaccatacaagcaaaaggtgacaaagaggctgcaaaattgcttcttcagaaacactgcacaatgacagacccattaaaagttgccttgcaacgattagaaaaagttcaggtaccggtggatatagttcccagatttccggtggctgagaatatattgattcaaaataactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0016787 GO:0019538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX Peptidase_M49

Protein Analysis

121

Amino Acids

13.52

Weight (kDa)

5.87

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79690 AT1G79690
fragaria_vesca	FvH4_6g28160 FvH4_6g28160 FvH4_6g28160 FvH4_6g28160 FvH4_6g28160 FvH4_6g28160
malus_domestica	MD17G1227300.v1.1
prunus_persica	Prupe.3G104700_v2.0.a1
pyrus_communis	pycom17g23060
rosa_chinensis	RchiOBHm_Chr2g0132121
rosa_laevigata	RLG00000019229
rosa_multiflora	Rmu_sc0002005.1_g000003 Rmu_sc0009538.1_g000018 Rmu_sc0033552.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112380
rosa_rugosa	Rorug02G0302400
rosa_samantha	Rh2AG355500 Rh2BG361600 Rh2CG339000
rosa_wichuraiana	Rw2G028860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	304
AccB1I	GGYRCC	1 cut(s)	304
AciI	CCGC	1 cut(s)	167
AcuI	CTGAAG	2 cut(s)	35, 224
AfaI	GTAC	2 cut(s)	98, 306
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgeI	ACCGGT	1 cut(s)	307
AgsI	TTSAA	3 cut(s)	121, 161, 356
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	224
AsiGI	ACCGGT	1 cut(s)	307
Asp700I	GAANNNNTTC	1 cut(s)	297
Asp718I	GGTACC	1 cut(s)	304
AsuHPI	GGTGA	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	304
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	211
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	109, 306
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	41
BsaWI	WCCGGW	2 cut(s)	307, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse118I	RCCGGY	1 cut(s)	307
Bse1I	ACTGG	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	77
BseGI	GGATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	77
BseMII	CTCAG	3 cut(s)	48, 170, 330
BseNI	ACTGG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	235
BshNI	GGYRCC	1 cut(s)	304
BshTI	ACCGGT	1 cut(s)	307
BsiSI	CCGG	2 cut(s)	308, 332
BslI	CCNNNNNNNGG	1 cut(s)	184
Bsp1407I	TGTACA	1 cut(s)	96
BspACI	CCGC	1 cut(s)	167
BspCNI	CTCAG	3 cut(s)	47, 171, 331
BspLI	GGNNCC	2 cut(s)	109, 306
BspT107I	GGYRCC	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	307
BsrGI	TGTACA	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	95
BssAI	RCCGGY	1 cut(s)	307
BstAUI	TGTACA	1 cut(s)	96
BstDEI	CTNAG	3 cut(s)	34, 179, 339
BstF5I	GGATG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	29
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	307
Csp6I	GTAC	2 cut(s)	97, 305
CspAI	ACCGGT	1 cut(s)	307
CspCI	CAANNNNNGTGG	2 cut(s)	20, 55
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	5 cut(s)	59, 110, 177, 224, 338
CviKI_1	RGCY	5 cut(s)	59, 110, 177, 224, 338
CviQI	GTAC	2 cut(s)	97, 305
DdeI	CTNAG	3 cut(s)	34, 179, 339
Eco57I	CTGAAG	2 cut(s)	35, 224
FaeI	CATG	1 cut(s)	65
FaiI	YATR	5 cut(s)	6, 63, 200, 317, 347
FatI	CATG	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	225
HapII	CCGG	2 cut(s)	308, 332
Hin1II	CATG	1 cut(s)	65
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	2 cut(s)	121, 352
HpaII	CCGG	2 cut(s)	308, 332
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	2 cut(s)	53, 125
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	155
HpyCH4V	TGCA	4 cut(s)	82, 227, 252, 283
HpyF3I	CTNAG	3 cut(s)	34, 179, 339
Hsp92II	CATG	1 cut(s)	65
KpnI	GGTACC	1 cut(s)	308
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	9 cut(s)	6, 38, 76, 138, 191, 287, 321, 337, 345
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	212
MboII	GAAGA	2 cut(s)	41, 230
MluCI	AATT	1 cut(s)	230
MnlI	CCTC	1 cut(s)	214
MroXI	GAANNNNTTC	1 cut(s)	297
MseI	TTAA	2 cut(s)	87, 269
MspI	CCGG	2 cut(s)	308, 332
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	2 cut(s)	109, 306
NmuCI	GTSAC	1 cut(s)	212
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	121, 352
PinAI	ACCGGT	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	109, 306
RsaI	GTAC	2 cut(s)	98, 306
RsaNI	GTAC	2 cut(s)	97, 305
SaqAI	TTAA	2 cut(s)	87, 269
SatI	GCNGC	1 cut(s)	225
SetI	ASST	5 cut(s)	61, 159, 166, 214, 306
SfaNI	GCATC	1 cut(s)	14
Sse9I	AATT	1 cut(s)	230
SsiI	CCGC	1 cut(s)	167
TaqII	GACCGA	1 cut(s)	35
TasI	AATT	1 cut(s)	230
TatI	WGTACW	1 cut(s)	96
TfiI	GAWTC	2 cut(s)	121, 352
Tru1I	TTAA	2 cut(s)	87, 269
Tru9I	TTAA	2 cut(s)	87, 269
TscAI	CASTG	1 cut(s)	254
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
XmnI	GAANNNNTTC	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.