Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033552.1

Orthogroup ID

OG0009385

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 837

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033552.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 469 bp

ctgcaagaactccactcagctttggaagaagcaaaagctgatatagttggcctttgggcactgaaattcctaatccacaaggaactgctcccgaagagcttattgaaatccatgtatgtttcttttcttgctggatgcttccgctcagttcgtttcggtcttaaggaagctcatggaatctcattgaaatccatgtatgtttcttttcttgctggatgcttccgctcagttcgtttcggtcttaaggaagctcatggaaaaggacaagcattgcagtttaactggttgtacaagcaaggagcctttattttgaatcctgatgaaacattttctgttgactttgataaggttgaaggtgcggttgagagcctgagtagggagatacttaccatacaagcaaaaggtgacaaagaggctgcaaaattgcttcttcagaaacactgcacaatgacagacccattaaaagttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0016787 GO:0019538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX Peptidase_M49

Protein Analysis

156

Amino Acids

17.48

Weight (kDa)

8.96

Isoelectric Point (pI)

27.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79690 AT1G79690
fragaria_vesca	FvH4_6g28160 FvH4_6g28160 FvH4_6g28160 FvH4_6g28160 FvH4_6g28160 FvH4_6g28160
malus_domestica	MD17G1227300.v1.1
prunus_persica	Prupe.3G104700_v2.0.a1
pyrus_communis	pycom17g23060
rosa_chinensis	RchiOBHm_Chr2g0132121
rosa_laevigata	RLG00000019229
rosa_multiflora	Rmu_sc0002005.1_g000003 Rmu_sc0009538.1_g000018 Rmu_sc0033552.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112380
rosa_rugosa	Rorug02G0302400
rosa_samantha	Rh2AG355500 Rh2BG361600 Rh2CG339000
rosa_wichuraiana	Rw2G028860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	144, 225
AciI	CCGC	3 cut(s)	142, 223, 359
AcsI	RAATTY	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	416
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	376
AflII	CTTAAG	2 cut(s)	161, 242
AgsI	TTSAA	4 cut(s)	106, 187, 313, 353
AluBI	AGCT	5 cut(s)	20, 38, 99, 170, 251
AluI	AGCT	5 cut(s)	20, 38, 99, 170, 251
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	416
BaeGI	GKGCMC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	403
BfrI	CTTAAG	2 cut(s)	161, 242
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
BmiI	GGNNCC	1 cut(s)	301
BmsI	GCATC	2 cut(s)	125, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse1I	ACTGG	1 cut(s)	287
Bse3DI	GCAATG	1 cut(s)	269
BseGI	GGATG	2 cut(s)	140, 221
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMI	GCAATG	1 cut(s)	269
BseMII	CTCAG	4 cut(s)	30, 159, 240, 362
BseNI	ACTGG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	403
BsgI	GTGCAG	1 cut(s)	427
BshFI	GGCC	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	376
BsnI	GGCC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp1407I	TGTACA	1 cut(s)	288
BspACI	CCGC	3 cut(s)	142, 223, 359
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	4 cut(s)	29, 158, 239, 363
BspLI	GGNNCC	1 cut(s)	301
BspQI	GCTCTTC	1 cut(s)	89
BspTI	CTTAAG	2 cut(s)	161, 242
BsrBI	CCGCTC	2 cut(s)	144, 225
BsrDI	GCAATG	1 cut(s)	269
BsrGI	TGTACA	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	287
Bst6I	CTCTTC	1 cut(s)	89
BstAFI	CTTAAG	2 cut(s)	161, 242
BstAUI	TGTACA	1 cut(s)	288
BstDEI	CTNAG	4 cut(s)	16, 145, 226, 371
BstF5I	GGATG	2 cut(s)	140, 221
BstSLI	GKGCMC	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	140, 221
BtsI	GCAGTG	1 cut(s)	439
BtsIMutI	CAGTG	2 cut(s)	59, 439
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	4 cut(s)	112, 173, 193, 254
CviJI	RGCY	9 cut(s)	20, 38, 51, 99, 170, 251, 302, 369, 416
CviKI_1	RGCY	9 cut(s)	20, 38, 51, 99, 170, 251, 302, 369, 416
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	4 cut(s)	16, 145, 226, 371
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	416
FaeI	CATG	4 cut(s)	115, 176, 196, 257
FaiI	YATR	8 cut(s)	44, 113, 117, 174, 194, 198, 255, 392
FatI	CATG	4 cut(s)	111, 172, 192, 253
Fnu4HI	GCNGC	1 cut(s)	417
FokI	GGATG	2 cut(s)	147, 228
Fsp4HI	GCNGC	1 cut(s)	417
GluI	GCNGC	1 cut(s)	417
HaeIII	GGCC	1 cut(s)	51
Hin1II	CATG	4 cut(s)	115, 176, 196, 257
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	2 cut(s)	177, 313
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	1 cut(s)	435
Hpy188III	TCNNGA	2 cut(s)	91, 317
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	1 cut(s)	347
HpyCH4V	TGCA	4 cut(s)	4, 274, 419, 444
HpyF3I	CTNAG	4 cut(s)	16, 145, 226, 371
Hsp92II	CATG	4 cut(s)	115, 176, 196, 257
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	2 cut(s)	93, 299
LpnPI	CCDG	5 cut(s)	117, 198, 268, 330, 383
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	2 cut(s)	125, 206
MaeIII	GTNAC	1 cut(s)	404
MbiI	CCGCTC	2 cut(s)	144, 225
MboII	GAAGA	3 cut(s)	38, 106, 422
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	2 cut(s)	65, 422
MnlI	CCTC	1 cut(s)	406
MseI	TTAA	4 cut(s)	162, 243, 279, 461
MspCI	CTTAAG	2 cut(s)	161, 242
NlaIII	CATG	4 cut(s)	115, 176, 196, 257
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	404
PciSI	GCTCTTC	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	177, 313
PkrI	GCNGC	1 cut(s)	418
PspN4I	GGNNCC	1 cut(s)	301
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	4 cut(s)	162, 243, 279, 461
SatI	GCNGC	1 cut(s)	417
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	8 cut(s)	22, 40, 101, 172, 253, 351, 358, 406
SfaNI	GCATC	2 cut(s)	125, 206
SmlI	CTYRAG	2 cut(s)	161, 242
SmoI	CTYRAG	2 cut(s)	161, 242
Sse9I	AATT	2 cut(s)	65, 422
SsiI	CCGC	3 cut(s)	142, 223, 359
TaqII	GACCGA	2 cut(s)	146, 227
TasI	AATT	2 cut(s)	65, 422
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	2 cut(s)	177, 313
Tru1I	TTAA	4 cut(s)	162, 243, 279, 461
Tru9I	TTAA	4 cut(s)	162, 243, 279, 461
TscAI	CASTG	2 cut(s)	66, 446
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	1 cut(s)	336
TspRI	CASTG	2 cut(s)	66, 446
Vha464I	CTTAAG	2 cut(s)	161, 242
XapI	RAATTY	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.