Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009385

Physical Location & Seq

Genomic Coordinates Reverse (-)

33763380 .. 33763679

Gene Structure 300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0302400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGGTTTCCGGCTACCTGTAATTGTTAGCTCCAAGAGAAGTCTTGCCCGATCTTCATCTAATGCGAACAAGACAGCTTCAAAGACCTTAGATATCCCAAAAGGCTACTTTGCGGTCTATGTTGGAGAGAGCCAGAAGAAGCGATTTTTGATTCCAATATCATACTTGAACCAACCTTCATTTATGGTTTTGCTGAGTCAAGCTGAAGAAGAATTTGGATATGATCATCCCATGGGCGGTATCACAATCCCCTGCAGTGAAGACATCTTCCTTGATCTCACTTCCCGCTTAAGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0016787 GO:0019538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX Peptidase_M49

Protein Analysis

99

Amino Acids

10.99

Weight (kDa)

8.82

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	15 - 96	4.2e-24	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79690 AT1G79690
fragaria_vesca	FvH4_6g28160 FvH4_6g28160 FvH4_6g28160 FvH4_6g28160 FvH4_6g28160 FvH4_6g28160
malus_domestica	MD17G1227300.v1.1
prunus_persica	Prupe.3G104700_v2.0.a1
pyrus_communis	pycom17g23060
rosa_chinensis	RchiOBHm_Chr2g0132121
rosa_laevigata	RLG00000019229
rosa_multiflora	Rmu_sc0002005.1_g000003 Rmu_sc0009538.1_g000018 Rmu_sc0033552.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112380
rosa_rugosa	Rorug02G0302400
rosa_samantha	Rh2AG355500 Rh2BG361600 Rh2CG339000
rosa_wichuraiana	Rw2G028860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	113, 237, 286
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	236
AflII	CTTAAG	1 cut(s)	289
AgsI	TTSAA	2 cut(s)	81, 169
AjuI	GAANNNNNNNTTGG	2 cut(s)	198, 230
AluBI	AGCT	3 cut(s)	30, 77, 203
AluI	AGCT	3 cut(s)	30, 77, 203
ApoI	RAATTY	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	267
BclI	TGATCA	1 cut(s)	223
BfmI	CTRYAG	1 cut(s)	253
BfrI	CTTAAG	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse8I	GATNNNNATC	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	226
BseJI	GATNNNNATC	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	10
BslI	CCNNNNNNNGG	1 cut(s)	236
Bsp143I	GATC	3 cut(s)	50, 223, 274
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	3 cut(s)	113, 237, 286
BspCNI	CTCAG	1 cut(s)	186
BspMAI	CTGCAG	1 cut(s)	257
BspTI	CTTAAG	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	3 cut(s)	50, 223, 274
BssT1I	CCWWGG	1 cut(s)	231
BstAFI	CTTAAG	1 cut(s)	289
BstDEI	CTNAG	2 cut(s)	88, 194
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	3 cut(s)	53, 226, 277
BstMBI	GATC	3 cut(s)	50, 223, 274
BstSFI	CTRYAG	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	262
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	6 cut(s)	13, 30, 77, 105, 132, 203
CviKI_1	RGCY	6 cut(s)	13, 30, 77, 105, 132, 203
DdeI	CTNAG	2 cut(s)	88, 194
DpnI	GATC	3 cut(s)	52, 225, 276
DpnII	GATC	3 cut(s)	50, 223, 274
Eco130I	CCWWGG	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	225
EcoRV	GATATC	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	1 cut(s)	235
FaiI	YATR	5 cut(s)	120, 163, 185, 222, 233
FatI	CATG	1 cut(s)	231
FauI	CCCGC	1 cut(s)	293
FbaI	TGATCA	1 cut(s)	223
FokI	GGATG	1 cut(s)	213
HapII	CCGG	1 cut(s)	10
Hin1II	CATG	1 cut(s)	235
HinfI	GANTC	2 cut(s)	151, 196
HpaII	CCGG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	186
HpyCH4V	TGCA	1 cut(s)	255
HpyF3I	CTNAG	2 cut(s)	88, 194
Hsp92II	CATG	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	50, 223, 274
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	4 cut(s)	23, 30, 146, 265
MalI	GATC	3 cut(s)	52, 225, 276
MboI	GATC	3 cut(s)	50, 223, 274
MboII	GAAGA	6 cut(s)	45, 148, 218, 221, 259, 272
MluCI	AATT	2 cut(s)	21, 212
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	1 cut(s)	103
MseI	TTAA	1 cut(s)	290
MspCI	CTTAAG	1 cut(s)	289
MspI	CCGG	1 cut(s)	10
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	3 cut(s)	50, 223, 274
NlaIII	CATG	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	151
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
PstI	CTGCAG	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	290
Sau3AI	GATC	3 cut(s)	50, 223, 274
SchI	GAGTC	1 cut(s)	205
SetI	ASST	6 cut(s)	19, 32, 79, 89, 178, 205
SfcI	CTRYAG	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	2 cut(s)	21, 212
SsiI	CCGC	3 cut(s)	113, 237, 286
StyI	CCWWGG	1 cut(s)	231
TasI	AATT	2 cut(s)	21, 212
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	45, 168
TspRI	CASTG	1 cut(s)	262
Vha464I	CTTAAG	1 cut(s)	289
XapI	RAATTY	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.