Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0017789

Physical Location & Seq

Genomic Coordinates Reverse (-)

59438692 .. 59440484

Gene Structure 1793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019972

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGAAAGAATCAGCTGAATCTTATTTGGGGAAGAAGATTCAATTTGCTGTCATAGCCGTTCCAGAGTACTGCAACCTTTTTGTACACTTGACTATATACTTGTTATCTGTATCTCACTTTACCCAATCCCAAAGGTTGGCTACATTGGATGCAGCCACCATTGCAGGCCCCAATGTGGCTCGGCTAATCAATGAGCCTACTGCTGCAACTATTGCCTATAGTATGGCAAAGAGAGAAGAGAGCATTTTTGTTTTTGACATGGGTGGCGGTTCATATCTTCTTAGCACATTAACCACTAATGATGGCATTGCCGAGTTCAAGCATACTGGAGGTACTCATGTGCCAGGACACTTGGCAGATAGGCTAAATGATCATTTCATCACTTTGATGAAGAGGATATACAAGAAGGATATCAGAAAATCAAAGAAGCTTGTTAGGAAGCTTTTAATGCTATGTGAGGAGGCTCAAAAAGCCTTGAGAACCCAGCACCAAGTGCATTTGGACATTAAATCCATTATTGATGACCTTCTCTTTGTTGATGGCTCTCCTCTCAGCCTTGGCATTGATCAAAATGGTATAATGGCAGAGTTTAACAAATGGAAGGATGGCAATAGGACTTTGGAGGTCTATGCCGGTGCACGACCATTGACAAAGGATTACATTGCAATTGGAGTGATTCATCTAAGACGTGTAACTACTGGACCATCATGGGAACCTCCCAAAGCAAGTGTTACATTTAAAGTTGATGCCATTGGCATCTTAAATGTGAAAGTAAAGGCGGAGGATACCATGGAATCTGCCTCCATAATGATTGACATCAGGGCACATTTCAGCTTGGAAAAGGTTGAAAAGATGGTGAAGGAGGCACAGGAATTCGCAGAAGAGGACGACAAATTGTTGAGGAAAGCAGCTGCAAAGAATGAATTTGTCAGCTACCTGTCACAGATGTATTGGCGTTGGTTTCGTCAGGAAAAGTACCGAGTTGAGATGGATTCCATTGACATAAGGGTGGCTTTTACCACGATGAAGGAGACTGCAAAATGGTTAATAGATAATGAAAATGCAGAGGCAGATGAGCTTGATGCCAAGATGAAGGCAGTGAAAGCGGTACTGGATTCAATCAACGTTCACTATTCCCCTACAACTTCTAGTCAATCCCATGATGAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

391

Amino Acids

44.08

Weight (kDa)

6.65

Isoelectric Point (pI)

31.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	1 - 174	1.8e-36	Hsp70 protein
HSP70	PF00012	206 - 375	8e-18	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017789)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0142581
rosa_laevigata	RLG00000019972
rosa_multiflora	Rmu_co8304105.1_g000001 Rmu_sc0004937.1_g000006
rosa_roxburghii	Rroxscaffold_2G00102470
rosa_rugosa	Rorug02G0374500
rosa_samantha	Rh2AG426100 Rh2AG426200 Rh2BG435800 Rh2CG412700 Rh2DG445600
rosa_wichuraiana	Rw2G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	136
AciI	CCGC	3 cut(s)	267, 779, 1106
AclI	AACGTT	1 cut(s)	1125
AcsI	RAATTY	2 cut(s)	872, 923
AdeI	CACNNNGTG	1 cut(s)	493
AfaI	GTAC	5 cut(s)	68, 84, 334, 977, 1110
AfiI	CCNNNNNNNGG	2 cut(s)	136, 175
AflIII	ACRYGT	1 cut(s)	688
AgsI	TTSAA	4 cut(s)	41, 319, 848, 1119
AjiI	CACGTC	1 cut(s)	689
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	7 cut(s)	14, 430, 442, 834, 911, 933, 1078
AluI	AGCT	7 cut(s)	14, 430, 442, 834, 911, 933, 1078
Alw21I	GWGCWC	1 cut(s)	640
Alw26I	GTCTC	1 cut(s)	1025
Alw44I	GTGCAC	1 cut(s)	636
AoxI	GGCC	1 cut(s)	166
ApaLI	GTGCAC	1 cut(s)	636
ApeKI	GCWGC	4 cut(s)	152, 203, 908, 911
ApoI	RAATTY	2 cut(s)	872, 923
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
AspS9I	GGNCC	2 cut(s)	167, 701
AsuHPI	GGTGA	1 cut(s)	868
AvaII	GGWCC	1 cut(s)	701
BaeGI	GKGCMC	2 cut(s)	640, 826
BaeI	ACNNNNGTAYC	2 cut(s)	324, 357
BarI	GAAGNNNNNNTAC	2 cut(s)	383, 415
Bbv12I	GWGCWC	1 cut(s)	640
BbvI	GCAGC	4 cut(s)	164, 190, 898, 920
BccI	CCATC	6 cut(s)	296, 533, 599, 712, 847, 982
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	345
BciVI	GTATCC	1 cut(s)	778
BclI	TGATCA	2 cut(s)	370, 565
BcoDI	GTCTC	1 cut(s)	1025
BfaI	CTAG	1 cut(s)	1149
BfmI	CTRYAG	1 cut(s)	217
BfuI	GTATCC	1 cut(s)	778
BisI	GCNGC	4 cut(s)	153, 204, 909, 912
BlsI	GCNGC	4 cut(s)	154, 205, 910, 913
BmcAI	AGTACT	1 cut(s)	68
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	1 cut(s)	701
BmgBI	CACGTC	1 cut(s)	689
BmgT120I	GGNCC	2 cut(s)	167, 701
BmiI	GGNNCC	2 cut(s)	169, 714
BmrFI	CCNGG	1 cut(s)	345
BmsI	GCATC	4 cut(s)	139, 736, 765, 1072
BpmI	CTGGAG	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	496
BsaBI	GATNNNNATC	1 cut(s)	815
BsaJI	CCNNGG	2 cut(s)	556, 789
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 175
Bse118I	RCCGGY	1 cut(s)	632
Bse1I	ACTGG	3 cut(s)	331, 703, 1116
Bse3DI	GCAATG	3 cut(s)	159, 306, 660
Bse8I	GATNNNNATC	1 cut(s)	815
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	556, 789
BseGI	GGATG	2 cut(s)	154, 610
BseJI	GATNNNNATC	1 cut(s)	815
BseLI	CCNNNNNNNGG	2 cut(s)	136, 175
BseMI	GCAATG	3 cut(s)	159, 306, 660
BseMII	CTCAG	1 cut(s)	565
BseNI	ACTGG	3 cut(s)	331, 703, 1116
BseRI	GAGGAG	2 cut(s)	473, 537
BseSI	GKGCMC	2 cut(s)	640, 826
BseXI	GCAGC	4 cut(s)	164, 190, 898, 920
BseYI	CCCAGC	1 cut(s)	483
BshFI	GGCC	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	640
BsiSI	CCGG	1 cut(s)	633
BslI	CCNNNNNNNGG	2 cut(s)	136, 175
BsmAI	GTCTC	1 cut(s)	1025
BsnI	GGCC	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	640, 826
Bsp1407I	TGTACA	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	370, 565
Bsp19I	CCATGG	1 cut(s)	789
BspACI	CCGC	3 cut(s)	267, 779, 1106
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	564
BspLI	GGNNCC	2 cut(s)	169, 714
BsrDI	GCAATG	3 cut(s)	159, 306, 660
BsrFI	RCCGGY	1 cut(s)	632
BsrGI	TGTACA	1 cut(s)	82
BsrI	ACTGG	3 cut(s)	331, 703, 1116
BssAI	RCCGGY	1 cut(s)	632
BssECI	CCNNGG	2 cut(s)	556, 789
BssMI	GATC	2 cut(s)	370, 565
BssT1I	CCWWGG	2 cut(s)	556, 789
Bst2UI	CCWGG	1 cut(s)	345
Bst6I	CTCTTC	3 cut(s)	231, 386, 876
BstAPI	GCANNNNNTGC	2 cut(s)	212, 493
BstAUI	TGTACA	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	3 cut(s)	281, 551, 683
BstDSI	CCRYGG	1 cut(s)	789
BstF5I	GGATG	2 cut(s)	154, 610
BstKTI	GATC	2 cut(s)	373, 568
BstMAI	GTCTC	1 cut(s)	1025
BstMBI	GATC	2 cut(s)	370, 565
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 161, 212, 448, 470, 493, 1103
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	343
BstSFI	CTRYAG	1 cut(s)	217
BstSLI	GKGCMC	2 cut(s)	640, 826
BstV1I	GCAGC	4 cut(s)	164, 190, 898, 920
BsuI	GTATCC	1 cut(s)	778
BsuRI	GGCC	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	789
BtrI	CACGTC	1 cut(s)	689
BtsCI	GGATG	2 cut(s)	154, 610
BtsI	GCAGTG	1 cut(s)	1104
BtsIMutI	CAGTG	1 cut(s)	1104
Cac8I	GCNNGC	1 cut(s)	166
Cfr10I	RCCGGY	1 cut(s)	632
Cfr13I	GGNCC	2 cut(s)	167, 701
Csp6I	GTAC	5 cut(s)	67, 83, 333, 976, 1109
CviAII	CATG	5 cut(s)	259, 338, 708, 790, 1160
CviQI	GTAC	5 cut(s)	67, 83, 333, 976, 1109
DdeI	CTNAG	3 cut(s)	281, 551, 683
DpnI	GATC	2 cut(s)	372, 567
DpnII	GATC	2 cut(s)	370, 565
DraI	TTTAAA	1 cut(s)	739
DraIII	CACNNNGTG	1 cut(s)	493
Eam1104I	CTCTTC	3 cut(s)	231, 386, 876
EarI	CTCTTC	3 cut(s)	231, 386, 876
EciI	GGCGGA	1 cut(s)	794
Eco130I	CCWWGG	2 cut(s)	556, 789
Eco32I	GATATC	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	701
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	872
EcoRII	CCWGG	1 cut(s)	343
EcoRV	GATATC	1 cut(s)	412
EcoT14I	CCWWGG	2 cut(s)	556, 789
ErhI	CCWWGG	2 cut(s)	556, 789
FaeI	CATG	5 cut(s)	262, 341, 711, 793, 1163
FalI	AAGNNNNNCTT	2 cut(s)	997, 1029
FatI	CATG	5 cut(s)	258, 337, 707, 789, 1159
FbaI	TGATCA	2 cut(s)	370, 565
Fnu4HI	GCNGC	4 cut(s)	153, 204, 909, 912
FokI	GGATG	2 cut(s)	161, 617
Fsp4HI	GCNGC	4 cut(s)	153, 204, 909, 912
FspBI	CTAG	1 cut(s)	1149
GluI	GCNGC	4 cut(s)	153, 204, 909, 912
GsaI	CCCAGC	1 cut(s)	487
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	1 cut(s)	633
Hin1II	CATG	5 cut(s)	262, 341, 711, 793, 1163
HindIII	AAGCTT	2 cut(s)	428, 440
HinfI	GANTC	7 cut(s)	8, 17, 37, 676, 794, 992, 1115
HpaII	CCGG	1 cut(s)	633
HphI	GGTGA	1 cut(s)	868
Hpy166II	GTNNAC	3 cut(s)	85, 638, 1129
Hpy188I	TCNGA	1 cut(s)	416
Hpy188III	TCNNGA	2 cut(s)	62, 968
Hpy8I	GTNNAC	3 cut(s)	85, 638, 1129
HpyAV	CCTTC	6 cut(s)	400, 536, 595, 853, 1021, 1087
HpyCH4IV	ACGT	2 cut(s)	688, 1125
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 161, 212, 448, 470, 493, 1103
HpyF3I	CTNAG	3 cut(s)	281, 551, 683
HpySE526I	ACGT	2 cut(s)	688, 1125
Hsp92II	CATG	5 cut(s)	262, 341, 711, 793, 1163
Ksp22I	TGATCA	2 cut(s)	370, 565
Kzo9I	GATC	2 cut(s)	370, 565
Lsp1109I	GCAGC	4 cut(s)	164, 190, 898, 920
LweI	GCATC	4 cut(s)	139, 736, 765, 1072
MaeI	CTAG	1 cut(s)	1149
MaeII	ACGT	2 cut(s)	688, 1125
MaeIII	GTNAC	3 cut(s)	691, 730, 939
MalI	GATC	2 cut(s)	372, 567
MboI	GATC	2 cut(s)	370, 565
MboII	GAAGA	6 cut(s)	43, 46, 248, 269, 403, 893
MfeI	CAATTG	1 cut(s)	666
MhlI	GDGCHC	2 cut(s)	640, 826
MluCI	AATT	5 cut(s)	41, 666, 872, 893, 923
MseI	TTAA	7 cut(s)	290, 446, 507, 591, 738, 761, 1046
MslI	CAYNNNNRTG	2 cut(s)	386, 1007
MspA1I	CMGCKG	2 cut(s)	14, 911
MspI	CCGG	1 cut(s)	633
MspR9I	CCNGG	1 cut(s)	345
MunI	CAATTG	1 cut(s)	666
MvaI	CCWGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	7 cut(s)	53, 161, 212, 448, 470, 493, 1103
NcoI	CCATGG	1 cut(s)	789
NdeII	GATC	2 cut(s)	370, 565
NlaIII	CATG	5 cut(s)	262, 341, 711, 793, 1163
NlaIV	GGNNCC	2 cut(s)	169, 714
NmeAIII	GCCGAG	2 cut(s)	160, 337
NmuCI	GTSAC	1 cut(s)	939
PfeI	GAWTC	7 cut(s)	8, 17, 37, 676, 794, 992, 1115
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	4 cut(s)	154, 205, 910, 913
Psp1406I	AACGTT	1 cut(s)	1125
Psp6I	CCWGG	1 cut(s)	343
PspFI	CCCAGC	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	2 cut(s)	169, 714
PspPI	GGNCC	2 cut(s)	167, 701
PvuII	CAGCTG	2 cut(s)	14, 911
RsaI	GTAC	5 cut(s)	68, 84, 334, 977, 1110
RsaNI	GTAC	5 cut(s)	67, 83, 333, 976, 1109
RseI	CAYNNNNRTG	2 cut(s)	386, 1007
SaqAI	TTAA	7 cut(s)	290, 446, 507, 591, 738, 761, 1046
SatI	GCNGC	4 cut(s)	153, 204, 909, 912
Sau3AI	GATC	2 cut(s)	370, 565
Sau96I	GGNCC	2 cut(s)	167, 701
ScaI	AGTACT	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	2 cut(s)	640, 826
SfaNI	GCATC	4 cut(s)	139, 736, 765, 1072
SfcI	CTRYAG	1 cut(s)	217
SinI	GGWCC	1 cut(s)	701
SmiMI	CAYNNNNRTG	2 cut(s)	386, 1007
SmlI	CTYRAG	1 cut(s)	475
SmoI	CTYRAG	1 cut(s)	475
Sse9I	AATT	5 cut(s)	41, 666, 872, 893, 923
SsiI	CCGC	3 cut(s)	267, 779, 1106
SspMI	CTAG	1 cut(s)	1149
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	2 cut(s)	556, 789
TaiI	ACGT	2 cut(s)	691, 1128
TasI	AATT	5 cut(s)	41, 666, 872, 893, 923
TatI	WGTACW	2 cut(s)	66, 82
TfiI	GAWTC	7 cut(s)	8, 17, 37, 676, 794, 992, 1115
Tru1I	TTAA	7 cut(s)	290, 446, 507, 591, 738, 761, 1046
Tru9I	TTAA	7 cut(s)	290, 446, 507, 591, 738, 761, 1046
TscAI	CASTG	1 cut(s)	1104
TseFI	GTSAC	1 cut(s)	939
TseI	GCWGC	4 cut(s)	152, 203, 908, 911
Tsp45I	GTSAC	1 cut(s)	939
TspDTI	ATGAA	9 cut(s)	17, 261, 367, 404, 668, 936, 1040, 1071, 1106
TspRI	CASTG	1 cut(s)	1104
Van91I	CCANNNNNTGG	1 cut(s)	136
VneI	GTGCAC	1 cut(s)	636
VpaK11BI	GGWCC	1 cut(s)	701
XapI	RAATTY	2 cut(s)	872, 923
XspI	CTAG	1 cut(s)	1149
ZrmI	AGTACT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.