Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004937.1

Orthogroup ID

OG0017789

Physical Location & Seq

Genomic Coordinates Forward (+)

27495 .. 28955

Gene Structure 1461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004937.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgacagaggcagtaagatcacaccatgatgatggcaagtgcttggttggagaggaggcaaggaacttagcccccttcaacccagagcgtacggtgtttgatgtaaagctgctcatgggaagaaaatttgatgatgctatggttcagagcagaattgatttcttacccttcaaggttgtcaacaaaaatggaaaggcttgtgttgagttgaagataagaggtgcaacgcatgtgtttacccctgaagagattagtgctagaatattaattaagatgaaagaatcagctcaatcgtatttggggaagaagattcaattcgctgtcatagccgttccagctcactttacccaatcccaaaggttggctacattggatgcagccaccattgcaggcctcaatgtggctcggctagtcaatgagcctactgctgcagctattgccttcagtatggcaaagagaggagaaagcatttttgtatttgacatgggtggcggttcatatcttcttagcacattaaccactaatgatggcattgctgagttaaagcatagtggaggtactcatgtgcttggacacttggcggataggctaaatgatcatttcatcagtttgatcaagaggatatacaagaaggatgtaaaaaaatcaaagaagcttgtgaggaagcttttaatgcaatgtgagcaggctcaaaaagccttgagaacccagccccaagtgcatttggacattaaatccattattgctgacctcctatttgttgatggctctcctctcagccttggcatcgatcaaaatggtataatggcagcgtttgttccaaagaacacccgtatcccgacaaagatgcttatgcttgttgaatttgacacatggaaggatggcaatagtgttaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

299

Amino Acids

33.07

Weight (kDa)

9.53

Isoelectric Point (pI)

29.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017789)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0142581
rosa_laevigata	RLG00000019972
rosa_multiflora	Rmu_co8304105.1_g000001 Rmu_sc0004937.1_g000006
rosa_roxburghii	Rroxscaffold_2G00102470
rosa_rugosa	Rorug02G0374500
rosa_samantha	Rh2AG426100 Rh2AG426200 Rh2BG435800 Rh2CG412700 Rh2DG445600
rosa_wichuraiana	Rw2G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	361
AciI	CCGC	2 cut(s)	492, 581
AcsI	RAATTY	2 cut(s)	125, 863
AcuI	CTGAAG	2 cut(s)	264, 427
AfaI	GTAC	2 cut(s)	91, 559
AfiI	CCNNNNNNNGG	2 cut(s)	361, 400
AgsI	TTSAA	5 cut(s)	79, 172, 211, 314, 863
AluBI	AGCT	6 cut(s)	109, 287, 338, 434, 655, 667
AluI	AGCT	6 cut(s)	109, 287, 338, 434, 655, 667
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	5 cut(s)	109, 377, 428, 431, 809
ApoI	RAATTY	2 cut(s)	125, 863
ArsI	GACNNNNNNTTYG	2 cut(s)	740, 772
AseI	ATTAAT	1 cut(s)	266
BaeI	ACNNNNGTAYC	4 cut(s)	549, 582, 817, 850
BbvI	GCAGC	5 cut(s)	96, 389, 415, 443, 821
BccI	CCATC	4 cut(s)	26, 521, 758, 875
BceAI	ACGGC	1 cut(s)	314
BcgI	CGANNNNNNTGC	2 cut(s)	829, 863
BciVI	GTATCC	1 cut(s)	845
BclI	TGATCA	2 cut(s)	595, 612
BfaI	CTAG	2 cut(s)	258, 410
BfmI	CTRYAG	1 cut(s)	429
BfuI	GTATCC	1 cut(s)	845
BisI	GCNGC	5 cut(s)	110, 378, 429, 432, 810
BlsI	GCNGC	5 cut(s)	111, 379, 430, 433, 811
BmsI	GCATC	4 cut(s)	124, 364, 795, 837
BpuEI	CTTGAG	1 cut(s)	721
Bsa29I	ATCGAT	1 cut(s)	789
BsaJI	CCNNGG	1 cut(s)	781
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 400
Bse3DI	GCAATG	3 cut(s)	384, 531, 683
BseCI	ATCGAT	1 cut(s)	789
BseDI	CCNNGG	1 cut(s)	781
BseGI	GGATG	3 cut(s)	379, 640, 886
BseLI	CCNNNNNNNGG	2 cut(s)	361, 400
BseMI	GCAATG	3 cut(s)	384, 531, 683
BseMII	CTCAG	2 cut(s)	528, 790
BseRI	GAGGAG	3 cut(s)	68, 474, 762
BseXI	GCAGC	5 cut(s)	96, 389, 415, 443, 821
BseYI	CCCAGC	1 cut(s)	708
BshFI	GGCC	1 cut(s)	393
BshVI	ATCGAT	1 cut(s)	789
BsiWI	CGTACG	1 cut(s)	89
BslI	CCNNNNNNNGG	2 cut(s)	361, 400
BsnI	GGCC	1 cut(s)	393
Bsp143I	GATC	4 cut(s)	17, 595, 612, 790
BspACI	CCGC	2 cut(s)	492, 581
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	2 cut(s)	529, 789
BspDI	ATCGAT	1 cut(s)	789
BspMAI	CTGCAG	1 cut(s)	433
BsrDI	GCAATG	3 cut(s)	384, 531, 683
BssECI	CCNNGG	1 cut(s)	781
BssMI	GATC	4 cut(s)	17, 595, 612, 790
BssT1I	CCWWGG	1 cut(s)	781
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	1 cut(s)	240
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstC8I	GCNNGC	2 cut(s)	391, 687
BstDEI	CTNAG	4 cut(s)	67, 506, 537, 776
BstF5I	GGATG	3 cut(s)	379, 640, 886
BstKTI	GATC	4 cut(s)	20, 598, 615, 793
BstMBI	GATC	4 cut(s)	17, 595, 612, 790
BstMWI	GCNNNNNNNGC	8 cut(s)	326, 335, 386, 437, 673, 682, 695, 718
BstNSI	RCATGY	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	5 cut(s)	96, 389, 415, 443, 821
BstXI	CCANNNNNNTGG	1 cut(s)	32
Bsu15I	ATCGAT	1 cut(s)	789
BsuI	GTATCC	1 cut(s)	845
BsuRI	GGCC	1 cut(s)	393
BsuTUI	ATCGAT	1 cut(s)	789
BtsCI	GGATG	3 cut(s)	379, 640, 886
Cac8I	GCNNGC	2 cut(s)	391, 687
ClaI	ATCGAT	1 cut(s)	789
Csp6I	GTAC	2 cut(s)	90, 558
CviAII	CATG	6 cut(s)	26, 115, 230, 484, 563, 873
CviQI	GTAC	2 cut(s)	90, 558
DdeI	CTNAG	4 cut(s)	67, 506, 537, 776
DpnI	GATC	4 cut(s)	19, 597, 614, 792
DpnII	GATC	4 cut(s)	17, 595, 612, 790
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
EciI	GGCGGA	1 cut(s)	596
Eco130I	CCWWGG	1 cut(s)	781
Eco147I	AGGCCT	1 cut(s)	393
Eco57I	CTGAAG	2 cut(s)	264, 427
EcoT14I	CCWWGG	1 cut(s)	781
ErhI	CCWWGG	1 cut(s)	781
FaeI	CATG	6 cut(s)	29, 118, 233, 487, 566, 876
FatI	CATG	6 cut(s)	25, 114, 229, 483, 562, 872
FbaI	TGATCA	2 cut(s)	595, 612
Fnu4HI	GCNGC	5 cut(s)	110, 378, 429, 432, 810
FokI	GGATG	3 cut(s)	386, 647, 893
Fsp4HI	GCNGC	5 cut(s)	110, 378, 429, 432, 810
FspBI	CTAG	2 cut(s)	258, 410
GluI	GCNGC	5 cut(s)	110, 378, 429, 432, 810
GsaI	CCCAGC	1 cut(s)	712
HaeIII	GGCC	1 cut(s)	393
Hin1II	CATG	6 cut(s)	29, 118, 233, 487, 566, 876
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	2 cut(s)	653, 665
HinfI	GANTC	2 cut(s)	281, 310
Hpy166II	GTNNAC	2 cut(s)	181, 237
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	2 cut(s)	616, 838
Hpy8I	GTNNAC	2 cut(s)	181, 237
HpyAV	CCTTC	5 cut(s)	85, 178, 451, 625, 871
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	6 cut(s)	224, 377, 389, 431, 676, 721
HpyF10VI	GCNNNNNNNGC	8 cut(s)	326, 335, 386, 437, 673, 682, 695, 718
HpyF3I	CTNAG	4 cut(s)	67, 506, 537, 776
Hsp92II	CATG	6 cut(s)	29, 118, 233, 487, 566, 876
Ksp22I	TGATCA	2 cut(s)	595, 612
Kzo9I	GATC	4 cut(s)	17, 595, 612, 790
LpnPI	CCDG	6 cut(s)	96, 255, 348, 375, 671, 722
Lsp1109I	GCAGC	5 cut(s)	96, 389, 415, 443, 821
LweI	GCATC	4 cut(s)	124, 364, 795, 837
MaeI	CTAG	2 cut(s)	258, 410
MalI	GATC	4 cut(s)	19, 597, 614, 792
MboI	GATC	4 cut(s)	17, 595, 612, 790
MboII	GAAGA	6 cut(s)	132, 223, 257, 316, 319, 494
MluCI	AATT	5 cut(s)	125, 153, 267, 314, 863
MmeI	TCCRAC	1 cut(s)	28
MseI	TTAA	7 cut(s)	266, 270, 515, 542, 671, 732, 894
MslI	CAYNNNNRTG	2 cut(s)	27, 30
MwoI	GCNNNNNNNGC	8 cut(s)	326, 335, 386, 437, 673, 682, 695, 718
NdeII	GATC	4 cut(s)	17, 595, 612, 790
NlaIII	CATG	6 cut(s)	29, 118, 233, 487, 566, 876
NmeAIII	GCCGAG	1 cut(s)	385
NspI	RCATGY	1 cut(s)	233
PacI	TTAATTAA	1 cut(s)	270
PceI	AGGCCT	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	281, 310
Pfl23II	CGTACG	1 cut(s)	89
PflMI	CCANNNNNTGG	1 cut(s)	361
PkrI	GCNGC	5 cut(s)	111, 379, 430, 433, 811
PshBI	ATTAAT	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	708
PspLI	CGTACG	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	433
RsaI	GTAC	2 cut(s)	91, 559
RsaNI	GTAC	2 cut(s)	90, 558
RseI	CAYNNNNRTG	2 cut(s)	27, 30
SaqAI	TTAA	7 cut(s)	266, 270, 515, 542, 671, 732, 894
SatI	GCNGC	5 cut(s)	110, 378, 429, 432, 810
Sau3AI	GATC	4 cut(s)	17, 595, 612, 790
SfaNI	GCATC	4 cut(s)	124, 364, 795, 837
SfcI	CTRYAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	2 cut(s)	27, 30
SmlI	CTYRAG	1 cut(s)	700
SmoI	CTYRAG	1 cut(s)	700
Sse9I	AATT	5 cut(s)	125, 153, 267, 314, 863
SseBI	AGGCCT	1 cut(s)	393
SsiI	CCGC	2 cut(s)	492, 581
SspI	AATATT	1 cut(s)	264
SspMI	CTAG	2 cut(s)	258, 410
StuI	AGGCCT	1 cut(s)	393
StyI	CCWWGG	1 cut(s)	781
TaaI	ACNGT	1 cut(s)	94
TaqI	TCGA	1 cut(s)	789
TasI	AATT	5 cut(s)	125, 153, 267, 314, 863
TfiI	GAWTC	2 cut(s)	281, 310
Tru1I	TTAA	7 cut(s)	266, 270, 515, 542, 671, 732, 894
Tru9I	TTAA	7 cut(s)	266, 270, 515, 542, 671, 732, 894
TseI	GCWGC	5 cut(s)	109, 377, 428, 431, 809
TspDTI	ATGAA	3 cut(s)	290, 486, 592
Van91I	CCANNNNNTGG	1 cut(s)	361
VspI	ATTAAT	1 cut(s)	266
XapI	RAATTY	2 cut(s)	125, 863
XceI	RCATGY	1 cut(s)	233
XspI	CTAG	2 cut(s)	258, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.