Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0017789

Physical Location & Seq

Genomic Coordinates Reverse (-)

61790334 .. 61792518

Gene Structure 2185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG435800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGACAGAGGCAGTAAGATCACACCCTGATGATGGCAAGTGCTTGGTTGGAGAGGAGGCAAGGAACTTAGCCCCCTTCAACCCAGAGCGTACGGTGTTTGATGTAAAGCTGCTCATGGGAAGAAAATTTGATGATGCTATGGTTCAGAGCAGAATTGATTTCTTACCCTTCAACGTTGTCAACAAAAATGGAAAGGCTTGTGTTGAGTTGAAGATAAGAGGTGCAACGCATGTGTTTACCCCTGAAGAGATTAGTGCTAGAATATTAATTAAGATGAAAGAATCAGCTCAATCTTATTTGGGGAAGAAGATTCAATTCGCTGTCATAGCCGTTCCAGCTCACTTTACCCAATCCCAAAGGTTGGCTACATTGGATGCAGCCACCATTGCAGGCCTCAATGTGGCTCGGCTAATCAATGAGCCTACTGCTGCAGCTATTGCCTTCAGTATGGCAAAGAGAGGAGAAAACATTTTTGTATTTGACATGGGTGGCGGTTCATATCTTCTTAGCACATTAACCACTAATGATGGCATTGCTGAGTTAAAGCATAGTGGAGGTACTCATGTGCTTGGACACTTGGCGGATAGGCTAAATGATCATTTCATCAGTTTGATCAAGAGGATATACAAGAAGGATGTAAAAAAATCAAAGAAGCTTGTGAGGAAGCTTTTAATGCAATGTGAGCAGGCTCAAAAAGCCTTGAGAACCCAGCCCCAAGTGCATTTGGACATTAAATCCATTATTGATGACCTCCTATTTGTTGATGGCTCTCCTCTCAGCCTTGGCATCAATCAAAATGGTATAATGGCAGCGTTTATTCCAAAGAACACCCGTATCCCGACAAAGATGCTTATGCTTGTTGAATTTGACACATGGAAGGATGGCAATAGGACTTTGGAGGTCTATGCCGGTGCACGACCATTGACAAAGGATTGCATTGCAATTGGAGTGATTCATCTAAAACGTGTAACTACTAGACCATCATGGGAACCTCCCAAAGCAAGTGTTACATTTAGAGTTGATGCCATTGGCATCTTAAATGTGAAAGTAAAGGCAGAGGACACCATGGAATTTGCCTCCATAATGATTGACATCAGGGCACATTTCAGCTTGGAAAAGGTTGACAAGATGGTGAAGGAGGCCCAGGAATTCGCAGAAGAGGACGACAAATTGTTGAGGAATGCAGTTGCAAAGAATGAATTTCTCACCTACTTGTCACGAAAGCGGTGGCGTTGGTTTCATCAGAAAAAGTACCGAGTTGAGATGGACTCCATTGACCAAAGGGTGATTTTTACCACAATAAAGGAGACTGTAGAATGGTTAGTAGATAATGAAGATGCAGAGGCAGATGACTTTGATGCCAAGATGAAGGAAGTGAAAGAGGTACTGGATCCAATCAAGGTTCACTATTCCCCTACAACTTCTAGTCAATCCCATAGTGAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

482

Amino Acids

54.41

Weight (kDa)

8.86

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	11 - 248	7.2e-70	Hsp70 protein
MreB_Mbl	PF06723	92 - 212	1e-05	MreB/Mbl protein
HSP70	PF00012	248 - 467	1.6e-26	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017789)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0142581
rosa_laevigata	RLG00000019972
rosa_multiflora	Rmu_co8304105.1_g000001 Rmu_sc0004937.1_g000006
rosa_roxburghii	Rroxscaffold_2G00102470
rosa_rugosa	Rorug02G0374500
rosa_samantha	Rh2AG426100 Rh2AG426200 Rh2BG435800 Rh2CG412700 Rh2DG445600
rosa_wichuraiana	Rw2G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	361
AciI	CCGC	3 cut(s)	492, 581, 1225
AclI	AACGTT	1 cut(s)	174
AclWI	GGATC	2 cut(s)	1385, 1398
AcsI	RAATTY	5 cut(s)	125, 863, 1070, 1148, 1199
AcuI	CTGAAG	2 cut(s)	264, 427
AfaI	GTAC	4 cut(s)	91, 559, 1253, 1386
AfiI	CCNNNNNNNGG	3 cut(s)	32, 361, 400
AflIII	ACRYGT	1 cut(s)	964
AgsI	TTSAA	5 cut(s)	79, 172, 211, 314, 863
AjnI	CCWGG	1 cut(s)	1143
AluBI	AGCT	7 cut(s)	109, 287, 338, 434, 655, 667, 1110
AluI	AGCT	7 cut(s)	109, 287, 338, 434, 655, 667, 1110
Alw21I	GWGCWC	1 cut(s)	916
Alw26I	GTCTC	1 cut(s)	1301
Alw44I	GTGCAC	1 cut(s)	912
AlwI	GGATC	2 cut(s)	1385, 1398
AoxI	GGCC	2 cut(s)	391, 1140
ApaLI	GTGCAC	1 cut(s)	912
ApeKI	GCWGC	5 cut(s)	109, 377, 428, 431, 809
ApoI	RAATTY	5 cut(s)	125, 863, 1070, 1148, 1199
ArsI	GACNNNNNNTTYG	2 cut(s)	740, 772
AseI	ATTAAT	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	1141
AsuHPI	GGTGA	3 cut(s)	1144, 1198, 1297
BaeGI	GKGCMC	2 cut(s)	916, 1102
BaeI	ACNNNNGTAYC	4 cut(s)	549, 582, 817, 850
BamHI	GGATCC	1 cut(s)	1390
Bbv12I	GWGCWC	1 cut(s)	916
BbvI	GCAGC	5 cut(s)	96, 389, 415, 443, 821
BccI	CCATC	7 cut(s)	26, 521, 758, 875, 988, 1123, 1258
BceAI	ACGGC	1 cut(s)	314
BcgI	CGANNNNNNTGC	2 cut(s)	829, 863
BciT130I	CCWGG	1 cut(s)	1145
BciVI	GTATCC	1 cut(s)	845
BclI	TGATCA	2 cut(s)	595, 612
BcoDI	GTCTC	1 cut(s)	1301
BfaI	CTAG	3 cut(s)	258, 975, 1425
BfmI	CTRYAG	2 cut(s)	429, 1311
BfuI	GTATCC	1 cut(s)	845
BisI	GCNGC	5 cut(s)	110, 378, 429, 432, 810
BlsI	GCNGC	5 cut(s)	111, 379, 430, 433, 811
Bme1390I	CCNGG	1 cut(s)	1145
BmgT120I	GGNCC	1 cut(s)	1141
BmiI	GGNNCC	2 cut(s)	990, 1392
BmrFI	CCNGG	1 cut(s)	1145
BmsI	GCATC	8 cut(s)	124, 364, 795, 837, 1012, 1041, 1327, 1348
BplI	GAGNNNNNCTC	2 cut(s)	1253, 1285
BpuEI	CTTGAG	1 cut(s)	721
BsaBI	GATNNNNATC	1 cut(s)	1091
BsaJI	CCNNGG	3 cut(s)	781, 1065, 1143
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 361, 400
Bse118I	RCCGGY	1 cut(s)	908
Bse1I	ACTGG	1 cut(s)	1392
Bse3DI	GCAATG	4 cut(s)	384, 531, 683, 936
Bse8I	GATNNNNATC	1 cut(s)	1091
BseBI	CCWGG	1 cut(s)	1145
BseDI	CCNNGG	3 cut(s)	781, 1065, 1143
BseGI	GGATG	3 cut(s)	379, 640, 886
BseJI	GATNNNNATC	1 cut(s)	1091
BseLI	CCNNNNNNNGG	3 cut(s)	32, 361, 400
BseMI	GCAATG	4 cut(s)	384, 531, 683, 936
BseMII	CTCAG	2 cut(s)	528, 790
BseNI	ACTGG	1 cut(s)	1392
BseRI	GAGGAG	3 cut(s)	68, 474, 762
BseSI	GKGCMC	2 cut(s)	916, 1102
BseXI	GCAGC	5 cut(s)	96, 389, 415, 443, 821
BseYI	CCCAGC	1 cut(s)	708
BshFI	GGCC	2 cut(s)	393, 1142
BsiHKAI	GWGCWC	1 cut(s)	916
BsiSI	CCGG	1 cut(s)	909
BsiWI	CGTACG	1 cut(s)	89
BslI	CCNNNNNNNGG	3 cut(s)	32, 361, 400
BsmAI	GTCTC	1 cut(s)	1301
BsmI	GAATGC	1 cut(s)	1186
BsnI	GGCC	2 cut(s)	393, 1142
Bsp1286I	GDGCHC	2 cut(s)	916, 1102
Bsp143I	GATC	4 cut(s)	17, 595, 612, 1390
Bsp19I	CCATGG	1 cut(s)	1065
BspACI	CCGC	3 cut(s)	492, 581, 1225
BspANI	GGCC	2 cut(s)	393, 1142
BspCNI	CTCAG	2 cut(s)	529, 789
BspLI	GGNNCC	2 cut(s)	990, 1392
BspMAI	CTGCAG	1 cut(s)	433
BspPI	GGATC	2 cut(s)	1385, 1398
BsrDI	GCAATG	4 cut(s)	384, 531, 683, 936
BsrFI	RCCGGY	1 cut(s)	908
BsrI	ACTGG	1 cut(s)	1392
BssAI	RCCGGY	1 cut(s)	908
BssECI	CCNNGG	3 cut(s)	781, 1065, 1143
BssMI	GATC	4 cut(s)	17, 595, 612, 1390
BssT1I	CCWWGG	2 cut(s)	781, 1065
Bst2UI	CCWGG	1 cut(s)	1145
Bst4CI	ACNGT	2 cut(s)	94, 1312
Bst6I	CTCTTC	2 cut(s)	240, 1152
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstC8I	GCNNGC	2 cut(s)	391, 687
BstDEI	CTNAG	4 cut(s)	67, 506, 537, 776
BstDSI	CCRYGG	1 cut(s)	1065
BstF5I	GGATG	3 cut(s)	379, 640, 886
BstKTI	GATC	4 cut(s)	20, 598, 615, 1393
BstMAI	GTCTC	1 cut(s)	1301
BstMBI	GATC	4 cut(s)	17, 595, 612, 1390
BstMWI	GCNNNNNNNGC	8 cut(s)	326, 335, 386, 437, 673, 682, 695, 718
BstNI	CCWGG	1 cut(s)	1145
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	1143
BstSFI	CTRYAG	2 cut(s)	429, 1311
BstSLI	GKGCMC	2 cut(s)	916, 1102
BstV1I	GCAGC	5 cut(s)	96, 389, 415, 443, 821
BstX2I	RGATCY	1 cut(s)	1390
BstYI	RGATCY	1 cut(s)	1390
BsuI	GTATCC	1 cut(s)	845
BsuRI	GGCC	2 cut(s)	393, 1142
BtgI	CCRYGG	1 cut(s)	1065
BtsCI	GGATG	3 cut(s)	379, 640, 886
Cac8I	GCNNGC	2 cut(s)	391, 687
Cfr10I	RCCGGY	1 cut(s)	908
Cfr13I	GGNCC	1 cut(s)	1141
Csp6I	GTAC	4 cut(s)	90, 558, 1252, 1385
CviAII	CATG	7 cut(s)	115, 230, 484, 563, 873, 984, 1066
CviQI	GTAC	4 cut(s)	90, 558, 1252, 1385
DdeI	CTNAG	4 cut(s)	67, 506, 537, 776
DpnI	GATC	4 cut(s)	19, 597, 614, 1392
DpnII	GATC	4 cut(s)	17, 595, 612, 1390
Eam1104I	CTCTTC	2 cut(s)	240, 1152
EarI	CTCTTC	2 cut(s)	240, 1152
EciI	GGCGGA	1 cut(s)	596
Eco130I	CCWWGG	2 cut(s)	781, 1065
Eco147I	AGGCCT	1 cut(s)	393
Eco57I	CTGAAG	2 cut(s)	264, 427
EcoRI	GAATTC	1 cut(s)	1148
EcoRII	CCWGG	1 cut(s)	1143
EcoT14I	CCWWGG	2 cut(s)	781, 1065
ErhI	CCWWGG	2 cut(s)	781, 1065
FaeI	CATG	7 cut(s)	118, 233, 487, 566, 876, 987, 1069
FatI	CATG	7 cut(s)	114, 229, 483, 562, 872, 983, 1065
FbaI	TGATCA	2 cut(s)	595, 612
Fnu4HI	GCNGC	5 cut(s)	110, 378, 429, 432, 810
FokI	GGATG	3 cut(s)	386, 647, 893
Fsp4HI	GCNGC	5 cut(s)	110, 378, 429, 432, 810
FspBI	CTAG	3 cut(s)	258, 975, 1425
GluI	GCNGC	5 cut(s)	110, 378, 429, 432, 810
GsaI	CCCAGC	1 cut(s)	712
HaeIII	GGCC	2 cut(s)	393, 1142
HapII	CCGG	1 cut(s)	909
Hin1II	CATG	7 cut(s)	118, 233, 487, 566, 876, 987, 1069
HincII	GTYRAC	2 cut(s)	181, 1123
HindII	GTYRAC	2 cut(s)	181, 1123
HindIII	AAGCTT	2 cut(s)	653, 665
HinfI	GANTC	4 cut(s)	281, 310, 952, 1268
HpaII	CCGG	1 cut(s)	909
HphI	GGTGA	3 cut(s)	1144, 1198, 1297
Hpy166II	GTNNAC	5 cut(s)	181, 237, 914, 1123, 1405
Hpy188I	TCNGA	2 cut(s)	147, 1245
Hpy188III	TCNNGA	3 cut(s)	616, 838, 1218
Hpy8I	GTNNAC	5 cut(s)	181, 237, 914, 1123, 1405
HpyAV	CCTTC	7 cut(s)	85, 178, 451, 625, 871, 1129, 1363
HpyCH4III	ACNGT	2 cut(s)	94, 1312
HpyCH4IV	ACGT	2 cut(s)	174, 964
HpyF10VI	GCNNNNNNNGC	8 cut(s)	326, 335, 386, 437, 673, 682, 695, 718
HpyF3I	CTNAG	4 cut(s)	67, 506, 537, 776
HpySE526I	ACGT	2 cut(s)	174, 964
Hsp92II	CATG	7 cut(s)	118, 233, 487, 566, 876, 987, 1069
Ksp22I	TGATCA	2 cut(s)	595, 612
Kzo9I	GATC	4 cut(s)	17, 595, 612, 1390
Lsp1109I	GCAGC	5 cut(s)	96, 389, 415, 443, 821
LweI	GCATC	8 cut(s)	124, 364, 795, 837, 1012, 1041, 1327, 1348
MaeI	CTAG	3 cut(s)	258, 975, 1425
MaeII	ACGT	2 cut(s)	174, 964
MaeIII	GTNAC	3 cut(s)	967, 1006, 1215
MalI	GATC	4 cut(s)	19, 597, 614, 1392
MboI	GATC	4 cut(s)	17, 595, 612, 1390
MboII	GAAGA	8 cut(s)	132, 223, 257, 316, 319, 494, 1169, 1346
MfeI	CAATTG	1 cut(s)	942
MflI	RGATCY	1 cut(s)	1390
MhlI	GDGCHC	2 cut(s)	916, 1102
MlyI	GAGTC	1 cut(s)	1262
MmeI	TCCRAC	1 cut(s)	28
MseI	TTAA	7 cut(s)	266, 270, 515, 542, 671, 732, 1037
MslI	CAYNNNNRTG	1 cut(s)	27
MspI	CCGG	1 cut(s)	909
MspR9I	CCNGG	1 cut(s)	1145
MunI	CAATTG	1 cut(s)	942
Mva1269I	GAATGC	1 cut(s)	1186
MvaI	CCWGG	1 cut(s)	1145
MwoI	GCNNNNNNNGC	8 cut(s)	326, 335, 386, 437, 673, 682, 695, 718
NcoI	CCATGG	1 cut(s)	1065
NdeII	GATC	4 cut(s)	17, 595, 612, 1390
NlaIII	CATG	7 cut(s)	118, 233, 487, 566, 876, 987, 1069
NlaIV	GGNNCC	2 cut(s)	990, 1392
NmeAIII	GCCGAG	1 cut(s)	385
NmuCI	GTSAC	1 cut(s)	1215
NspI	RCATGY	1 cut(s)	233
PacI	TTAATTAA	1 cut(s)	270
PceI	AGGCCT	1 cut(s)	393
PctI	GAATGC	1 cut(s)	1186
PfeI	GAWTC	3 cut(s)	281, 310, 952
Pfl23II	CGTACG	1 cut(s)	89
PflMI	CCANNNNNTGG	1 cut(s)	361
PkrI	GCNGC	5 cut(s)	111, 379, 430, 433, 811
PleI	GAGTC	1 cut(s)	1262
PpsI	GAGTC	1 cut(s)	1262
PshBI	ATTAAT	1 cut(s)	266
Psp1406I	AACGTT	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	1143
PspFI	CCCAGC	1 cut(s)	708
PspGI	CCWGG	1 cut(s)	1143
PspLI	CGTACG	1 cut(s)	89
PspN4I	GGNNCC	2 cut(s)	990, 1392
PspPI	GGNCC	1 cut(s)	1141
PstI	CTGCAG	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	1390
RsaI	GTAC	4 cut(s)	91, 559, 1253, 1386
RsaNI	GTAC	4 cut(s)	90, 558, 1252, 1385
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	7 cut(s)	266, 270, 515, 542, 671, 732, 1037
SatI	GCNGC	5 cut(s)	110, 378, 429, 432, 810
Sau3AI	GATC	4 cut(s)	17, 595, 612, 1390
Sau96I	GGNCC	1 cut(s)	1141
SchI	GAGTC	1 cut(s)	1262
ScrFI	CCNGG	1 cut(s)	1145
SduI	GDGCHC	2 cut(s)	916, 1102
SfaNI	GCATC	8 cut(s)	124, 364, 795, 837, 1012, 1041, 1327, 1348
SfcI	CTRYAG	2 cut(s)	429, 1311
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	700
SmoI	CTYRAG	1 cut(s)	700
SseBI	AGGCCT	1 cut(s)	393
SsiI	CCGC	3 cut(s)	492, 581, 1225
SspI	AATATT	1 cut(s)	264
SspMI	CTAG	3 cut(s)	258, 975, 1425
StuI	AGGCCT	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	1143
StyI	CCWWGG	2 cut(s)	781, 1065
TaaI	ACNGT	2 cut(s)	94, 1312
TaiI	ACGT	2 cut(s)	177, 967
TfiI	GAWTC	3 cut(s)	281, 310, 952
Tru1I	TTAA	7 cut(s)	266, 270, 515, 542, 671, 732, 1037
Tru9I	TTAA	7 cut(s)	266, 270, 515, 542, 671, 732, 1037
TseFI	GTSAC	1 cut(s)	1215
TseI	GCWGC	5 cut(s)	109, 377, 428, 431, 809
Tsp45I	GTSAC	1 cut(s)	1215
TspDTI	ATGAA	8 cut(s)	290, 486, 592, 944, 1212, 1229, 1347, 1382
Van91I	CCANNNNNTGG	1 cut(s)	361
VneI	GTGCAC	1 cut(s)	912
VspI	ATTAAT	1 cut(s)	266
XapI	RAATTY	5 cut(s)	125, 863, 1070, 1148, 1199
XceI	RCATGY	1 cut(s)	233
XspI	CTAG	3 cut(s)	258, 975, 1425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.