Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0017789

Physical Location & Seq

Genomic Coordinates Reverse (-)

57540895 .. 57545682

Gene Structure 4788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G034930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCGGTGCTAGTGAAGATGATCGTGCTCCTCGTCTTCGTGCTCCTCTTCGCTGAATCTTTTGGATCGTGTGTGGATAATGAGGTGATTGGTATCCATCTCGGAACCACTTATTCGTCGGTGGCCGTGTACAAGAATGGTCAGGTCAAGATGATACCAAATGACAGAGGCAGTAAGATCACACCCTCATGGGTTTCATTCACTGATGATGGCAAGTGCTTGGTTGGAGAGGAGGCAAGGAACTTAGCCCCCTTCAACCCAGAGCGTACGGTGTTTGATGTAAAGCTGCTCATGGGAAGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016592 GO:0019538 GO:0019941 GO:0030054 GO:0030163 GO:0030312 GO:0030433 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034976 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046686 GO:0050896 GO:0051603 GO:0051716 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

101

Amino Acids

11.12

Weight (kDa)

7.77

Isoelectric Point (pI)

25.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	29 - 101	1.9e-22	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017789)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0142581
rosa_laevigata	RLG00000019972
rosa_multiflora	Rmu_co8304105.1_g000001 Rmu_sc0004937.1_g000006
rosa_roxburghii	Rroxscaffold_2G00102470
rosa_rugosa	Rorug02G0374500
rosa_samantha	Rh2AG426100 Rh2AG426200 Rh2BG435800 Rh2CG412700 Rh2DG445600
rosa_wichuraiana	Rw2G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	1 cut(s)	123
AfaI	GTAC	2 cut(s)	131, 268
AgsI	TTSAA	1 cut(s)	256
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw21I	GWGCWC	2 cut(s)	30, 45
AlwI	GGATC	1 cut(s)	73
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	28
Bbv12I	GWGCWC	2 cut(s)	30, 45
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	2 cut(s)	105, 203
BceAI	ACGGC	1 cut(s)	110
BciVI	GTATCC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	104
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
BmiI	GGNNCC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	28
BsaBI	GATNNNNATC	1 cut(s)	92
Bse8I	GATNNNNATC	1 cut(s)	92
BseJI	GATNNNNATC	1 cut(s)	92
BseRI	GAGGAG	3 cut(s)	20, 35, 245
BseXI	GCAGC	1 cut(s)	273
BshFI	GGCC	1 cut(s)	125
BsiHKAI	GWGCWC	2 cut(s)	30, 45
BsiWI	CGTACG	1 cut(s)	266
BsnI	GGCC	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	30, 45
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	21, 65, 177
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	106
BspPI	GGATC	1 cut(s)	73
BsrGI	TGTACA	1 cut(s)	129
BssMI	GATC	3 cut(s)	21, 65, 177
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	53
BstAUI	TGTACA	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	244
BstKTI	GATC	3 cut(s)	24, 68, 180
BstMBI	GATC	3 cut(s)	21, 65, 177
BstV1I	GCAGC	1 cut(s)	273
BstV2I	GAAGAC	1 cut(s)	28
BsuI	GTATCC	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	125
BtsIMutI	CAGTG	1 cut(s)	201
Csp6I	GTAC	2 cut(s)	130, 267
CviAII	CATG	2 cut(s)	189, 292
CviJI	RGCY	3 cut(s)	125, 248, 286
CviKI_1	RGCY	3 cut(s)	125, 248, 286
CviQI	GTAC	2 cut(s)	130, 267
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	3 cut(s)	23, 67, 179
DpnII	GATC	3 cut(s)	21, 65, 177
EaeI	YGGCCR	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
FaeI	CATG	2 cut(s)	192, 295
FaiI	YATR	2 cut(s)	190, 293
FatI	CATG	2 cut(s)	188, 291
Fnu4HI	GCNGC	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	287
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	192, 295
HinfI	GANTC	1 cut(s)	56
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	271
HpyF3I	CTNAG	1 cut(s)	244
Hsp92II	CATG	2 cut(s)	192, 295
Kzo9I	GATC	3 cut(s)	21, 65, 177
LmnI	GCTCC	2 cut(s)	33, 48
LpnPI	CCDG	2 cut(s)	128, 273
Lsp1109I	GCAGC	1 cut(s)	273
MaeI	CTAG	1 cut(s)	11
MalI	GATC	3 cut(s)	23, 67, 179
MboI	GATC	3 cut(s)	21, 65, 177
MboII	GAAGA	3 cut(s)	28, 28, 40
MhlI	GDGCHC	2 cut(s)	30, 45
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	7 cut(s)	41, 56, 76, 161, 196, 223, 226
MslI	CAYNNNNRTG	1 cut(s)	187
NdeII	GATC	3 cut(s)	21, 65, 177
NlaIII	CATG	2 cut(s)	192, 295
NlaIV	GGNNCC	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	56
Pfl23II	CGTACG	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	288
PspLI	CGTACG	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	106
RsaI	GTAC	2 cut(s)	131, 268
RsaNI	GTAC	2 cut(s)	130, 267
RseI	CAYNNNNRTG	1 cut(s)	187
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	3 cut(s)	21, 65, 177
SduI	GDGCHC	2 cut(s)	30, 45
SetI	ASST	3 cut(s)	87, 147, 288
SmiMI	CAYNNNNRTG	1 cut(s)	187
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	271
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	56
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	208
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.