Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8304105.1

Orthogroup ID

OG0017789

Physical Location & Seq

Genomic Coordinates Reverse (-)

173 .. 845

Gene Structure 673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8304105.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgtccatatttgatcttacaaataggactttggaggtctatgccggtgcacgaccattgacaaaggattgcattgcaattggagtgattcatctaaaacgtgtaactactagaccatcatgggaacctcccaaagcaagtgttacatttagagttgatgccattggcatcttaaatgtgaaagtaaaggcagaggacaccatggaatctgcctccataatgattgacatcagggcacatttcagcttggaaaaggttgacaagatggtgaaggaggcccaggaattcgcagaagaggacgacaaattgttgaggaatgcagttgcaaagaatgaatttctcacctacttgtcacgaaagcggtggcgttggtttcatcagaaaaagtaccgagttgagatggactccattgaccaaagggtgatttttaccacaataaaggagactgtagaatggttagtagataatgaagatgcagaggcagatgactttgatgccaagatgaaggaagtgaaagaggtactggatccaatcaaggttcactattcccctacaactactagtcaatcccatagtgagttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

194

Amino Acids

22.51

Weight (kDa)

5.8

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017789)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0142581
rosa_laevigata	RLG00000019972
rosa_multiflora	Rmu_co8304105.1_g000001 Rmu_sc0004937.1_g000006
rosa_roxburghii	Rroxscaffold_2G00102470
rosa_rugosa	Rorug02G0374500
rosa_samantha	Rh2AG426100 Rh2AG426200 Rh2BG435800 Rh2CG412700 Rh2DG445600
rosa_wichuraiana	Rw2G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	361
AclWI	GGATC	2 cut(s)	521, 534
AcsI	RAATTY	2 cut(s)	284, 335
AfaI	GTAC	2 cut(s)	389, 522
AflIII	ACRYGT	1 cut(s)	100
AhlI	ACTAGT	1 cut(s)	560
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	1 cut(s)	246
AluI	AGCT	1 cut(s)	246
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	437
Alw44I	GTGCAC	1 cut(s)	48
AlwI	GGATC	2 cut(s)	521, 534
AoxI	GGCC	1 cut(s)	276
ApaLI	GTGCAC	1 cut(s)	48
ApoI	RAATTY	2 cut(s)	284, 335
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	3 cut(s)	280, 334, 433
BaeGI	GKGCMC	2 cut(s)	52, 238
BamHI	GGATCC	1 cut(s)	526
Bbv12I	GWGCWC	1 cut(s)	52
BccI	CCATC	3 cut(s)	124, 259, 394
BciT130I	CCWGG	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	437
BcuI	ACTAGT	1 cut(s)	560
BfaI	CTAG	2 cut(s)	111, 561
BfmI	CTRYAG	1 cut(s)	447
Bme1390I	CCNGG	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	2 cut(s)	126, 528
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	4 cut(s)	148, 177, 463, 484
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
BsaBI	GATNNNNATC	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	201, 279
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	528
Bse3DI	GCAATG	1 cut(s)	72
Bse8I	GATNNNNATC	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	201, 279
BseJI	GATNNNNATC	1 cut(s)	227
BseMI	GCAATG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	528
BseSI	GKGCMC	2 cut(s)	52, 238
BshFI	GGCC	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	437
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	52, 238
Bsp143I	GATC	2 cut(s)	13, 526
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	1 cut(s)	361
BspANI	GGCC	1 cut(s)	278
BspLI	GGNNCC	2 cut(s)	126, 528
BspPI	GGATC	2 cut(s)	521, 534
BsrDI	GCAATG	1 cut(s)	72
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	528
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	201, 279
BssMI	GATC	2 cut(s)	13, 526
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	1 cut(s)	288
BstDSI	CCRYGG	1 cut(s)	201
BstKTI	GATC	2 cut(s)	16, 529
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	2 cut(s)	13, 526
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	447
BstSLI	GKGCMC	2 cut(s)	52, 238
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BsuRI	GGCC	1 cut(s)	278
BtgI	CCRYGG	1 cut(s)	201
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	388, 521
CviAII	CATG	2 cut(s)	120, 202
CviJI	RGCY	2 cut(s)	246, 278
CviKI_1	RGCY	2 cut(s)	246, 278
CviQI	GTAC	2 cut(s)	388, 521
DpnI	GATC	2 cut(s)	15, 528
DpnII	GATC	2 cut(s)	13, 526
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	201
EcoRI	GAATTC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	2 cut(s)	123, 205
FaiI	YATR	6 cut(s)	8, 42, 121, 203, 218, 573
FatI	CATG	2 cut(s)	119, 201
FspBI	CTAG	2 cut(s)	111, 561
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	1 cut(s)	45
Hin1II	CATG	2 cut(s)	123, 205
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	3 cut(s)	88, 206, 404
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	3 cut(s)	280, 334, 433
Hpy166II	GTNNAC	3 cut(s)	50, 259, 541
Hpy188I	TCNGA	1 cut(s)	381
Hpy188III	TCNNGA	1 cut(s)	354
Hpy8I	GTNNAC	3 cut(s)	50, 259, 541
HpyAV	CCTTC	2 cut(s)	265, 499
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	6 cut(s)	50, 72, 77, 320, 326, 476
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	2 cut(s)	123, 205
Kzo9I	GATC	2 cut(s)	13, 526
LpnPI	CCDG	5 cut(s)	58, 217, 266, 293, 509
LweI	GCATC	4 cut(s)	148, 177, 463, 484
MaeI	CTAG	2 cut(s)	111, 561
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	3 cut(s)	103, 142, 351
MalI	GATC	2 cut(s)	15, 528
MboI	GATC	2 cut(s)	13, 526
MboII	GAAGA	2 cut(s)	305, 482
MfeI	CAATTG	1 cut(s)	78
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	2 cut(s)	52, 238
MluCI	AATT	4 cut(s)	78, 284, 305, 335
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	9 cut(s)	28, 138, 187, 223, 268, 289, 306, 472, 511
MseI	TTAA	1 cut(s)	173
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	281
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	322
MvaI	CCWGG	1 cut(s)	281
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	2 cut(s)	13, 526
NlaIII	CATG	2 cut(s)	123, 205
NlaIV	GGNNCC	2 cut(s)	126, 528
NmuCI	GTSAC	1 cut(s)	351
PctI	GAATGC	1 cut(s)	322
PfeI	GAWTC	2 cut(s)	88, 206
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	126, 528
PspPI	GGNCC	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	526
RsaI	GTAC	2 cut(s)	389, 522
RsaNI	GTAC	2 cut(s)	388, 521
SaqAI	TTAA	1 cut(s)	173
Sau3AI	GATC	2 cut(s)	13, 526
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	2 cut(s)	52, 238
SetI	ASST	8 cut(s)	39, 103, 130, 248, 258, 347, 522, 540
SfaNI	GCATC	4 cut(s)	148, 177, 463, 484
SfcI	CTRYAG	1 cut(s)	447
SpeI	ACTAGT	1 cut(s)	560
Sse9I	AATT	4 cut(s)	78, 284, 305, 335
SsiI	CCGC	1 cut(s)	361
SspMI	CTAG	2 cut(s)	111, 561
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	1 cut(s)	103
TasI	AATT	4 cut(s)	78, 284, 305, 335
TfiI	GAWTC	2 cut(s)	88, 206
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	351
Tsp45I	GTSAC	1 cut(s)	351
TspDTI	ATGAA	5 cut(s)	80, 348, 365, 483, 518
VneI	GTGCAC	1 cut(s)	48
XapI	RAATTY	2 cut(s)	284, 335
XspI	CTAG	2 cut(s)	111, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.