Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0017789

Physical Location & Seq

Genomic Coordinates Reverse (-)

56323204 .. 56325796

Gene Structure 2593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG412700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGGCGGTGCTAGTGAATATGATAGTGTTCGTCTTCTTCGTGCTCCTCTTCGCTGAATCTTTTGGATCGTGTGTGGATGATGACGTGATTGGTATCCATCTCGGAACCACTTATTCGTCGGTGGCCGTGTACAAGAAGAATGGTCAGGTCGAGATGATACCAAATGATGATGGCAACTGCTCATGGGAAGAAAATTTGATGATGCTATGGTTCAGAGCAGAATTGATTTATTTCTTACCCTTCAAGGTTGTCAACAAAAATGGAAAGGCTTGTGTTGAGTTGAAGATAAGAGGTGCAACGCATGTGTTTACCCCTGAAGAGATTAGTGCTACTAGAATATTAATTAAGATGAAAGAATCAGCTGAATCTTATTTAGGGAAGAAGATTCAATTTGCTGTCATAGCCGTTCCAGCTCACTTTACCCAATCCCAAAGGTTGGCTACATTGGATGCAGCCACCATTGCAGGCCTCAATGTGGCTCGGCTAATCAATGAGCCTACTGCTGCAGCTATTGCCTTCAGTATGGCAAAGAGAGGAGAAAGCATTTTTGTTTTTGACATGGGTGGCGGTTCATATCTTCTTAGCACATTAACCACTAATGATGGCATTGTTGAGTTAAAGCATAGTGGAGGTACTCATGTGCTTATTGGACACTTGGCGGATAGGCTAAATGATCATTTCATCAGTTTGATGAAGAGGATATACAGGAAGGATGTCAAAAAATCAAAGAAGCTTGTGAGGAAGCTTTTAATGCAATGTGAGCAGGCTCAAAAAGCCTTGAGAACCCAGCCCCAAGTGCATTTGGACATTAAATCCATTATTGATGACCTCCTATTTGTTGATGGCTCTCCTCTCAGCCTTGGCATCGATCAAAATGGTATAATGGCAGAGTTTATTCCAAAGAACACCCGTATCCCGACAAAGATGCTTATGCTTGTTGAGTTTGACACATGGAAGGATGGCAATAGGACTTTGGAGGTCTATGCCGGTGCACGACCATTGACAAAGGATTGCATTGCAATTGGAGTGATTCATCTAAAACGTGTAACTACTAGACCATCATGGGAACCTCCCAAAGCAAGTGTTACATTTAGAGTTGATGCCATTGGCATCTTAAATGTGAAAGTAAAGGCGGAGGACACCATGGAATCTGCCTCCATAATGATTGACATCAGGGCACATTTCAGCTTGGAAAAGGTTGACAAGATGGTGAAGGAGGCCCAGGAATTCGCAGAAGAGGACGACAAATTGTTGAGGAACGCAGTTGCAAAGAATGAATTTCTCACCTACCTGTCACGAAAGCGGTGGCATTGGTTTCATCAGAAAAAGTACCGAGTTGAGATGGACTCCATTGACGAAGGGGTGGTTTTTAGCACAGTGAAGGAGACTTTAAAATGGTTAATGGATAATGAAGATGCAGAGGCAGATGACTTTAATGCCAAGATGAAGGCAGTGAAAGAGGTACTGGATCCAATCAAGGTTCACTATTCCCCTACAACTTCTAGTCAATCCCATGATGAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

508

Amino Acids

57.28

Weight (kDa)

6.93

Isoelectric Point (pI)

27.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	76 - 275	6.9e-54	Hsp70 protein
MreB_Mbl	PF06723	126 - 207	9.4e-06	MreB/Mbl protein
HSP70	PF00012	274 - 493	3.8e-27	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017789)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0142581
rosa_laevigata	RLG00000019972
rosa_multiflora	Rmu_co8304105.1_g000001 Rmu_sc0004937.1_g000006
rosa_roxburghii	Rroxscaffold_2G00102470
rosa_rugosa	Rorug02G0374500
rosa_samantha	Rh2AG426100 Rh2AG426200 Rh2BG435800 Rh2CG412700 Rh2DG445600
rosa_wichuraiana	Rw2G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	436
AciI	CCGC	5 cut(s)	5, 567, 659, 1133, 1303
AclWI	GGATC	3 cut(s)	73, 1463, 1476
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	3 cut(s)	193, 1226, 1277
AcuI	CTGAAG	2 cut(s)	336, 502
AfaI	GTAC	4 cut(s)	131, 634, 1331, 1464
AfiI	CCNNNNNNNGG	2 cut(s)	436, 475
AflIII	ACRYGT	1 cut(s)	1042
AgsI	TTSAA	3 cut(s)	244, 283, 389
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	1221
AluBI	AGCT	6 cut(s)	362, 413, 509, 733, 745, 1188
AluI	AGCT	6 cut(s)	362, 413, 509, 733, 745, 1188
Alw21I	GWGCWC	2 cut(s)	45, 994
Alw26I	GTCTC	1 cut(s)	1379
Alw44I	GTGCAC	1 cut(s)	990
AlwI	GGATC	3 cut(s)	73, 1463, 1476
AoxI	GGCC	3 cut(s)	123, 466, 1218
ApaLI	GTGCAC	1 cut(s)	990
ApeKI	GCWGC	3 cut(s)	452, 503, 506
ApoI	RAATTY	3 cut(s)	193, 1226, 1277
ArsI	GACNNNNNNTTYG	2 cut(s)	818, 850
AseI	ATTAAT	1 cut(s)	341
AspS9I	GGNCC	1 cut(s)	1219
AsuHPI	GGTGA	2 cut(s)	1222, 1276
BaeGI	GKGCMC	2 cut(s)	994, 1180
BaeI	ACNNNNGTAYC	4 cut(s)	624, 657, 895, 928
BamHI	GGATCC	1 cut(s)	1468
BarI	GAAGNNNNNNTAC	2 cut(s)	686, 718
BbsI	GAAGAC	1 cut(s)	25
Bbv12I	GWGCWC	2 cut(s)	45, 994
BbvI	GCAGC	3 cut(s)	464, 490, 518
BccI	CCATC	8 cut(s)	105, 164, 596, 836, 953, 1066, 1201, 1336
BceAI	ACGGC	2 cut(s)	110, 389
BcgI	CGANNNNNNTGC	2 cut(s)	907, 941
BciT130I	CCWGG	1 cut(s)	1223
BciVI	GTATCC	2 cut(s)	104, 923
BclI	TGATCA	1 cut(s)	673
BcoDI	GTCTC	1 cut(s)	1379
BfaI	CTAG	4 cut(s)	11, 333, 1053, 1503
BfmI	CTRYAG	1 cut(s)	504
BfuI	GTATCC	2 cut(s)	104, 923
BisI	GCNGC	3 cut(s)	453, 504, 507
BlsI	GCNGC	3 cut(s)	454, 505, 508
Bme1390I	CCNGG	1 cut(s)	1223
BmgBI	CACGTC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	1219
BmiI	GGNNCC	3 cut(s)	106, 1068, 1470
BmrFI	CCNGG	1 cut(s)	1223
BmsI	GCATC	7 cut(s)	192, 439, 873, 915, 1090, 1119, 1405
BpiI	GAAGAC	1 cut(s)	25
BplI	GAGNNNNNCTC	2 cut(s)	1331, 1363
BpuEI	CTTGAG	1 cut(s)	799
Bsa29I	ATCGAT	1 cut(s)	867
BsaBI	GATNNNNATC	2 cut(s)	92, 1169
BsaJI	CCNNGG	3 cut(s)	859, 1143, 1221
Bsc4I	CCNNNNNNNGG	2 cut(s)	436, 475
Bse118I	RCCGGY	1 cut(s)	986
Bse1I	ACTGG	1 cut(s)	1470
Bse3DI	GCAATG	3 cut(s)	459, 761, 1014
Bse8I	GATNNNNATC	2 cut(s)	92, 1169
BseBI	CCWGG	1 cut(s)	1223
BseCI	ATCGAT	1 cut(s)	867
BseDI	CCNNGG	3 cut(s)	859, 1143, 1221
BseGI	GGATG	4 cut(s)	82, 454, 718, 964
BseJI	GATNNNNATC	2 cut(s)	92, 1169
BseLI	CCNNNNNNNGG	2 cut(s)	436, 475
BseMI	GCAATG	3 cut(s)	459, 761, 1014
BseMII	CTCAG	1 cut(s)	868
BseNI	ACTGG	1 cut(s)	1470
BseRI	GAGGAG	3 cut(s)	35, 549, 840
BseSI	GKGCMC	2 cut(s)	994, 1180
BseXI	GCAGC	3 cut(s)	464, 490, 518
BseYI	CCCAGC	1 cut(s)	786
BshFI	GGCC	3 cut(s)	125, 468, 1220
BshVI	ATCGAT	1 cut(s)	867
BsiHKAI	GWGCWC	2 cut(s)	45, 994
BsiSI	CCGG	1 cut(s)	987
BslI	CCNNNNNNNGG	2 cut(s)	436, 475
BsmAI	GTCTC	1 cut(s)	1379
BsnI	GGCC	3 cut(s)	125, 468, 1220
Bsp1286I	GDGCHC	3 cut(s)	45, 994, 1180
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	4 cut(s)	65, 673, 868, 1468
Bsp19I	CCATGG	1 cut(s)	1143
BspACI	CCGC	5 cut(s)	5, 567, 659, 1133, 1303
BspANI	GGCC	3 cut(s)	125, 468, 1220
BspCNI	CTCAG	1 cut(s)	867
BspDI	ATCGAT	1 cut(s)	867
BspLI	GGNNCC	3 cut(s)	106, 1068, 1470
BspMAI	CTGCAG	1 cut(s)	508
BspPI	GGATC	3 cut(s)	73, 1463, 1476
BsrDI	GCAATG	3 cut(s)	459, 761, 1014
BsrFI	RCCGGY	1 cut(s)	986
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	1470
BssAI	RCCGGY	1 cut(s)	986
BssECI	CCNNGG	3 cut(s)	859, 1143, 1221
BssMI	GATC	4 cut(s)	65, 673, 868, 1468
BssT1I	CCWWGG	2 cut(s)	859, 1143
Bst2UI	CCWGG	1 cut(s)	1223
Bst4CI	ACNGT	1 cut(s)	1378
Bst6I	CTCTTC	4 cut(s)	53, 312, 689, 1230
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstAUI	TGTACA	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	466, 765
BstDEI	CTNAG	2 cut(s)	581, 854
BstDSI	CCRYGG	1 cut(s)	1143
BstF5I	GGATG	4 cut(s)	82, 454, 718, 964
BstKTI	GATC	4 cut(s)	68, 676, 871, 1471
BstMAI	GTCTC	1 cut(s)	1379
BstMBI	GATC	4 cut(s)	65, 673, 868, 1468
BstMWI	GCNNNNNNNGC	8 cut(s)	401, 410, 461, 512, 751, 760, 773, 796
BstNI	CCWGG	1 cut(s)	1223
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	1221
BstSFI	CTRYAG	1 cut(s)	504
BstSLI	GKGCMC	2 cut(s)	994, 1180
BstV1I	GCAGC	3 cut(s)	464, 490, 518
BstV2I	GAAGAC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	1468
BstYI	RGATCY	1 cut(s)	1468
Bsu15I	ATCGAT	1 cut(s)	867
BsuI	GTATCC	2 cut(s)	104, 923
BsuRI	GGCC	3 cut(s)	125, 468, 1220
BsuTUI	ATCGAT	1 cut(s)	867
BtgI	CCRYGG	1 cut(s)	1143
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	4 cut(s)	82, 454, 718, 964
BtsI	GCAGTG	1 cut(s)	1458
BtsIMutI	CAGTG	2 cut(s)	1383, 1458
Cac8I	GCNNGC	2 cut(s)	466, 765
Cfr10I	RCCGGY	1 cut(s)	986
Cfr13I	GGNCC	1 cut(s)	1219
ClaI	ATCGAT	1 cut(s)	867
Csp6I	GTAC	4 cut(s)	130, 633, 1330, 1463
CviAII	CATG	8 cut(s)	183, 302, 559, 638, 951, 1062, 1144, 1514
CviQI	GTAC	4 cut(s)	130, 633, 1330, 1463
DdeI	CTNAG	2 cut(s)	581, 854
DpnI	GATC	4 cut(s)	67, 675, 870, 1470
DpnII	GATC	4 cut(s)	65, 673, 868, 1468
DraI	TTTAAA	1 cut(s)	1392
EaeI	YGGCCR	1 cut(s)	123
Eam1104I	CTCTTC	4 cut(s)	53, 312, 689, 1230
EarI	CTCTTC	4 cut(s)	53, 312, 689, 1230
EciI	GGCGGA	2 cut(s)	674, 1148
Eco130I	CCWWGG	2 cut(s)	859, 1143
Eco147I	AGGCCT	1 cut(s)	468
Eco57I	CTGAAG	2 cut(s)	336, 502
EcoRI	GAATTC	1 cut(s)	1226
EcoRII	CCWGG	1 cut(s)	1221
EcoT14I	CCWWGG	2 cut(s)	859, 1143
ErhI	CCWWGG	2 cut(s)	859, 1143
FaeI	CATG	8 cut(s)	186, 305, 562, 641, 954, 1065, 1147, 1517
FatI	CATG	8 cut(s)	182, 301, 558, 637, 950, 1061, 1143, 1513
FbaI	TGATCA	1 cut(s)	673
Fnu4HI	GCNGC	3 cut(s)	453, 504, 507
FokI	GGATG	4 cut(s)	89, 461, 725, 971
Fsp4HI	GCNGC	3 cut(s)	453, 504, 507
FspBI	CTAG	4 cut(s)	11, 333, 1053, 1503
GluI	GCNGC	3 cut(s)	453, 504, 507
GsaI	CCCAGC	1 cut(s)	790
HaeIII	GGCC	3 cut(s)	125, 468, 1220
HapII	CCGG	1 cut(s)	987
Hin1II	CATG	8 cut(s)	186, 305, 562, 641, 954, 1065, 1147, 1517
HincII	GTYRAC	2 cut(s)	253, 1201
HindII	GTYRAC	2 cut(s)	253, 1201
HindIII	AAGCTT	2 cut(s)	731, 743
HinfI	GANTC	7 cut(s)	56, 356, 365, 385, 1030, 1148, 1346
HpaII	CCGG	1 cut(s)	987
HphI	GGTGA	2 cut(s)	1222, 1276
Hpy166II	GTNNAC	6 cut(s)	130, 253, 309, 992, 1201, 1483
Hpy188I	TCNGA	3 cut(s)	104, 215, 1323
Hpy188III	TCNNGA	3 cut(s)	151, 916, 1296
Hpy8I	GTNNAC	6 cut(s)	130, 253, 309, 992, 1201, 1483
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	8 cut(s)	250, 526, 703, 949, 1207, 1352, 1375, 1441
HpyCH4III	ACNGT	1 cut(s)	1378
HpyCH4IV	ACGT	2 cut(s)	84, 1042
HpyF10VI	GCNNNNNNNGC	8 cut(s)	401, 410, 461, 512, 751, 760, 773, 796
HpyF3I	CTNAG	2 cut(s)	581, 854
HpySE526I	ACGT	2 cut(s)	84, 1042
Hsp92II	CATG	8 cut(s)	186, 305, 562, 641, 954, 1065, 1147, 1517
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	4 cut(s)	65, 673, 868, 1468
LmnI	GCTCC	1 cut(s)	48
Lsp1109I	GCAGC	3 cut(s)	464, 490, 518
LweI	GCATC	7 cut(s)	192, 439, 873, 915, 1090, 1119, 1405
MaeI	CTAG	4 cut(s)	11, 333, 1053, 1503
MaeII	ACGT	2 cut(s)	84, 1042
MaeIII	GTNAC	3 cut(s)	1045, 1084, 1293
MalI	GATC	4 cut(s)	67, 675, 870, 1470
MboI	GATC	4 cut(s)	65, 673, 868, 1468
MfeI	CAATTG	1 cut(s)	1020
MflI	RGATCY	1 cut(s)	1468
MhlI	GDGCHC	3 cut(s)	45, 994, 1180
MluCI	AATT	8 cut(s)	193, 221, 342, 389, 1020, 1226, 1247, 1277
MlyI	GAGTC	1 cut(s)	1340
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	1 cut(s)	987
MspR9I	CCNGG	1 cut(s)	1223
MunI	CAATTG	1 cut(s)	1020
MvaI	CCWGG	1 cut(s)	1223
MwoI	GCNNNNNNNGC	8 cut(s)	401, 410, 461, 512, 751, 760, 773, 796
NcoI	CCATGG	1 cut(s)	1143
NdeII	GATC	4 cut(s)	65, 673, 868, 1468
NlaIII	CATG	8 cut(s)	186, 305, 562, 641, 954, 1065, 1147, 1517
NlaIV	GGNNCC	3 cut(s)	106, 1068, 1470
NmeAIII	GCCGAG	1 cut(s)	460
NmuCI	GTSAC	1 cut(s)	1293
NspI	RCATGY	1 cut(s)	305
PacI	TTAATTAA	1 cut(s)	345
PceI	AGGCCT	1 cut(s)	468
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PfeI	GAWTC	6 cut(s)	56, 356, 365, 385, 1030, 1148
PflMI	CCANNNNNTGG	1 cut(s)	436
PkrI	GCNGC	3 cut(s)	454, 505, 508
PleI	GAGTC	1 cut(s)	1340
PpsI	GAGTC	1 cut(s)	1340
PshBI	ATTAAT	1 cut(s)	341
Psp6I	CCWGG	1 cut(s)	1221
PspFI	CCCAGC	1 cut(s)	786
PspGI	CCWGG	1 cut(s)	1221
PspN4I	GGNNCC	3 cut(s)	106, 1068, 1470
PspPI	GGNCC	1 cut(s)	1219
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	1468
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	4 cut(s)	131, 634, 1331, 1464
RsaNI	GTAC	4 cut(s)	130, 633, 1330, 1463
SatI	GCNGC	3 cut(s)	453, 504, 507
Sau3AI	GATC	4 cut(s)	65, 673, 868, 1468
Sau96I	GGNCC	1 cut(s)	1219
SchI	GAGTC	1 cut(s)	1340
ScrFI	CCNGG	1 cut(s)	1223
SduI	GDGCHC	3 cut(s)	45, 994, 1180
SfaNI	GCATC	7 cut(s)	192, 439, 873, 915, 1090, 1119, 1405
SfcI	CTRYAG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	778
SmoI	CTYRAG	1 cut(s)	778
Sse9I	AATT	8 cut(s)	193, 221, 342, 389, 1020, 1226, 1247, 1277
SseBI	AGGCCT	1 cut(s)	468
SsiI	CCGC	5 cut(s)	5, 567, 659, 1133, 1303
SspI	AATATT	1 cut(s)	339
SspMI	CTAG	4 cut(s)	11, 333, 1053, 1503
StuI	AGGCCT	1 cut(s)	468
StyD4I	CCNGG	1 cut(s)	1221
StyI	CCWWGG	2 cut(s)	859, 1143
TaaI	ACNGT	1 cut(s)	1378
TaiI	ACGT	2 cut(s)	87, 1045
TaqI	TCGA	2 cut(s)	150, 867
TasI	AATT	8 cut(s)	193, 221, 342, 389, 1020, 1226, 1247, 1277
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	6 cut(s)	56, 356, 365, 385, 1030, 1148
TscAI	CASTG	2 cut(s)	1383, 1458
TseFI	GTSAC	1 cut(s)	1293
TseI	GCWGC	3 cut(s)	452, 503, 506
Tsp45I	GTSAC	1 cut(s)	1293
TspDTI	ATGAA	9 cut(s)	365, 561, 670, 707, 1022, 1290, 1307, 1425, 1460
TspRI	CASTG	2 cut(s)	1383, 1458
Van91I	CCANNNNNTGG	1 cut(s)	436
VneI	GTGCAC	1 cut(s)	990
VspI	ATTAAT	1 cut(s)	341
XapI	RAATTY	3 cut(s)	193, 1226, 1277
XceI	RCATGY	1 cut(s)	305
XspI	CTAG	4 cut(s)	11, 333, 1053, 1503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.