Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0017789

Physical Location & Seq

Genomic Coordinates Forward (+)

24607259 .. 24609892

Gene Structure 2634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00102470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGCGGTGCTAGTGAAGATGATAGTGCTCCTCGTCTTCGTGCTCCTCTTCGCTGAATCTTTTGGATCGTGTGTGGATGATGAGGTGATTGGTATCCATCTCGGAACCACTTATTCGTCGGTGGCCGTGTACAAGAATGGTCAGGTCGAGATGATACCAAATGACAGAGGCAGTAAGATCACACCCTCATGGGTTTCATTCACTGATGATGGCAAGTGCTTGGTTGGAGAGGAGGCAAGGAACTTGGCCCCCTTCAACCCAGAGCGTACGGTGTTTGATGTAAAGCTGCTCATGGGAAGAAAGTTTAATTATTGCTTTCAATTTGGTGGGAATAGATTTGATGATGCTATGGTTCAGAGCAGAATTGATTTCTTACCCTTCAAGGTTGTCAACAAAAATGGAAAGCCTTGTGTTGAGTTGAAGATAAGAGGTGCAACGCATGTGTTTACCCCTGAAGAGATTAGTGCTAGAATATTAATTAAGATGAAAGAATCAGCTGAATCTTATTTGGGGAAGAAGATTCATTTTGCTGTCATAGCCGTTCCAGAGTTAAAGCATAGTGGAGACCTCCTATTTGTTGATGGCTCTCCTCTCAGCCTTGGCATCGATCAAAATGGTATAATGGCAAAGTTTATTCCAAAGAACACCCATATCCCGACAAAGATGCTTATGCTTGTTGAGTTTGACACATGGAAGGATGGCAATAGGACTTTGGAGGTCTATGCCGGTGCACGACCATTGACAAAGGATTGCATTGCAATTGGAGTGATTCATCTAAAACGTGTAACTACTAGACCATCATGGGAACCTCCCAAAGCAAGTGTTACATTTAGAGTTGATGCCATTGGCATCTTAAATGTGAAAGTAAAGGCGGAGGACACCATGGAATCTGCCTCCTTAATGATTGACATCAGGGCACATTTCAGCTTGGAAAAGGTTGACAAGATGGTGAAGGAGGCCCAGGAATTCGCAGAAGAGGACGACAAATTGTTGAGGAATGCAGTTGCAAAGAATGAATTTCTCACCTACCTGGCACGAAAGCGGTGGCGTTGGTTTCATCAGAAAAAGTACCGAGTTAAGATGGACTCCATTGACGAAAGGGTGGTTTTTACCACAATAAAGGAGACTGTAGAATGGTTAGTGGATAATGAAGATGCAGAGGCAGATGACTTTGATGCCAAGATGAAGGAAGTGAAAGAGGTACTGGATTCAATCAAAGTTCACTATTCCCCTACAACTTCTAGTCAATCCCATGATGAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

421

Amino Acids

47.75

Weight (kDa)

6.4

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	29 - 182	1.4e-41	Hsp70 protein
HSP70	PF00012	187 - 406	4e-27	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017789)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0142581
rosa_laevigata	RLG00000019972
rosa_multiflora	Rmu_co8304105.1_g000001 Rmu_sc0004937.1_g000006
rosa_roxburghii	Rroxscaffold_2G00102470
rosa_rugosa	Rorug02G0374500
rosa_samantha	Rh2AG426100 Rh2AG426200 Rh2BG435800 Rh2CG412700 Rh2DG445600
rosa_wichuraiana	Rw2G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 872, 1042
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	2 cut(s)	965, 1016
AcuI	CTGAAG	1 cut(s)	474
AfaI	GTAC	4 cut(s)	131, 268, 1070, 1203
AflIII	ACRYGT	1 cut(s)	781
AgsI	TTSAA	5 cut(s)	256, 320, 382, 421, 1212
AjnI	CCWGG	2 cut(s)	960, 1029
AluBI	AGCT	3 cut(s)	286, 497, 927
AluI	AGCT	3 cut(s)	286, 497, 927
Alw21I	GWGCWC	3 cut(s)	30, 45, 733
Alw26I	GTCTC	2 cut(s)	558, 1118
Alw44I	GTGCAC	1 cut(s)	729
AlwI	GGATC	1 cut(s)	73
AoxI	GGCC	3 cut(s)	123, 246, 957
ApaLI	GTGCAC	1 cut(s)	729
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	2 cut(s)	965, 1016
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
AseI	ATTAAT	1 cut(s)	476
AspS9I	GGNCC	2 cut(s)	247, 958
AsuHPI	GGTGA	3 cut(s)	97, 961, 1015
BaeGI	GKGCMC	2 cut(s)	733, 919
BbsI	GAAGAC	1 cut(s)	28
Bbv12I	GWGCWC	3 cut(s)	30, 45, 733
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	7 cut(s)	105, 203, 575, 692, 805, 940, 1075
BceAI	ACGGC	2 cut(s)	110, 524
BcgI	CGANNNNNNTGC	2 cut(s)	646, 680
BciT130I	CCWGG	2 cut(s)	962, 1031
BciVI	GTATCC	1 cut(s)	104
BcoDI	GTCTC	2 cut(s)	558, 1118
BfaI	CTAG	4 cut(s)	11, 468, 792, 1242
BfmI	CTRYAG	1 cut(s)	1128
BfuI	GTATCC	1 cut(s)	104
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
Bme1390I	CCNGG	2 cut(s)	962, 1031
BmgT120I	GGNCC	2 cut(s)	247, 958
BmiI	GGNNCC	3 cut(s)	106, 249, 807
BmrFI	CCNGG	2 cut(s)	962, 1031
BmsI	GCATC	7 cut(s)	334, 612, 654, 829, 858, 1144, 1165
BpiI	GAAGAC	1 cut(s)	28
Bsa29I	ATCGAT	1 cut(s)	606
BsaBI	GATNNNNATC	2 cut(s)	92, 908
BsaI	GGTCTC	1 cut(s)	558
BsaJI	CCNNGG	3 cut(s)	598, 882, 960
Bse118I	RCCGGY	1 cut(s)	725
Bse1I	ACTGG	1 cut(s)	1209
Bse3DI	GCAATG	1 cut(s)	753
Bse8I	GATNNNNATC	2 cut(s)	92, 908
BseBI	CCWGG	2 cut(s)	962, 1031
BseCI	ATCGAT	1 cut(s)	606
BseDI	CCNNGG	3 cut(s)	598, 882, 960
BseGI	GGATG	2 cut(s)	82, 703
BseJI	GATNNNNATC	2 cut(s)	92, 908
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	1 cut(s)	607
BseNI	ACTGG	1 cut(s)	1209
BseRI	GAGGAG	4 cut(s)	20, 35, 245, 579
BseSI	GKGCMC	2 cut(s)	733, 919
BseXI	GCAGC	1 cut(s)	273
BshFI	GGCC	3 cut(s)	125, 248, 959
BshVI	ATCGAT	1 cut(s)	606
BsiHKAI	GWGCWC	3 cut(s)	30, 45, 733
BsiSI	CCGG	1 cut(s)	726
BsiWI	CGTACG	1 cut(s)	266
BsmAI	GTCTC	2 cut(s)	558, 1118
BsmI	GAATGC	1 cut(s)	1003
BsnI	GGCC	3 cut(s)	125, 248, 959
Bso31I	GGTCTC	1 cut(s)	558
Bsp1286I	GDGCHC	4 cut(s)	30, 45, 733, 919
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	65, 177, 607
Bsp19I	CCATGG	1 cut(s)	882
BspACI	CCGC	3 cut(s)	5, 872, 1042
BspANI	GGCC	3 cut(s)	125, 248, 959
BspCNI	CTCAG	1 cut(s)	606
BspDI	ATCGAT	1 cut(s)	606
BspLI	GGNNCC	3 cut(s)	106, 249, 807
BspPI	GGATC	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	558
BsrDI	GCAATG	1 cut(s)	753
BsrFI	RCCGGY	1 cut(s)	725
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	1209
BssAI	RCCGGY	1 cut(s)	725
BssECI	CCNNGG	3 cut(s)	598, 882, 960
BssMI	GATC	3 cut(s)	65, 177, 607
BssT1I	CCWWGG	2 cut(s)	598, 882
Bst2UI	CCWGG	2 cut(s)	962, 1031
Bst4CI	ACNGT	2 cut(s)	271, 1129
Bst6I	CTCTTC	3 cut(s)	53, 450, 969
BstAUI	TGTACA	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	593
BstDSI	CCRYGG	1 cut(s)	882
BstF5I	GGATG	2 cut(s)	82, 703
BstKTI	GATC	3 cut(s)	68, 180, 610
BstMAI	GTCTC	2 cut(s)	558, 1118
BstMBI	GATC	3 cut(s)	65, 177, 607
BstMWI	GCNNNNNNNGC	1 cut(s)	536
BstNI	CCWGG	2 cut(s)	962, 1031
BstNSI	RCATGY	1 cut(s)	443
BstSCI	CCNGG	2 cut(s)	960, 1029
BstSFI	CTRYAG	1 cut(s)	1128
BstSLI	GKGCMC	2 cut(s)	733, 919
BstV1I	GCAGC	1 cut(s)	273
BstV2I	GAAGAC	1 cut(s)	28
Bsu15I	ATCGAT	1 cut(s)	606
BsuI	GTATCC	1 cut(s)	104
BsuRI	GGCC	3 cut(s)	125, 248, 959
BsuTUI	ATCGAT	1 cut(s)	606
BtgI	CCRYGG	1 cut(s)	882
BtsCI	GGATG	2 cut(s)	82, 703
BtsIMutI	CAGTG	1 cut(s)	201
Cfr10I	RCCGGY	1 cut(s)	725
Cfr13I	GGNCC	2 cut(s)	247, 958
ClaI	ATCGAT	1 cut(s)	606
Csp6I	GTAC	4 cut(s)	130, 267, 1069, 1202
CviAII	CATG	7 cut(s)	189, 292, 440, 690, 801, 883, 1253
CviQI	GTAC	4 cut(s)	130, 267, 1069, 1202
DdeI	CTNAG	1 cut(s)	593
DpnI	GATC	3 cut(s)	67, 179, 609
DpnII	GATC	3 cut(s)	65, 177, 607
EaeI	YGGCCR	1 cut(s)	123
Eam1104I	CTCTTC	3 cut(s)	53, 450, 969
EarI	CTCTTC	3 cut(s)	53, 450, 969
EciI	GGCGGA	1 cut(s)	887
Eco130I	CCWWGG	2 cut(s)	598, 882
Eco31I	GGTCTC	1 cut(s)	558
Eco57I	CTGAAG	1 cut(s)	474
EcoRI	GAATTC	1 cut(s)	965
EcoRII	CCWGG	2 cut(s)	960, 1029
EcoT14I	CCWWGG	2 cut(s)	598, 882
ErhI	CCWWGG	2 cut(s)	598, 882
FaeI	CATG	7 cut(s)	192, 295, 443, 693, 804, 886, 1256
FatI	CATG	7 cut(s)	188, 291, 439, 689, 800, 882, 1252
Fnu4HI	GCNGC	1 cut(s)	287
FokI	GGATG	2 cut(s)	89, 710
Fsp4HI	GCNGC	1 cut(s)	287
FspBI	CTAG	4 cut(s)	11, 468, 792, 1242
GluI	GCNGC	1 cut(s)	287
HaeIII	GGCC	3 cut(s)	125, 248, 959
HapII	CCGG	1 cut(s)	726
Hin1II	CATG	7 cut(s)	192, 295, 443, 693, 804, 886, 1256
HincII	GTYRAC	2 cut(s)	391, 940
HindII	GTYRAC	2 cut(s)	391, 940
HinfI	GANTC	8 cut(s)	56, 491, 500, 520, 769, 887, 1085, 1208
HpaII	CCGG	1 cut(s)	726
HphI	GGTGA	3 cut(s)	97, 961, 1015
Hpy166II	GTNNAC	6 cut(s)	130, 391, 447, 731, 940, 1222
Hpy188I	TCNGA	3 cut(s)	104, 357, 1062
Hpy188III	TCNNGA	3 cut(s)	148, 545, 655
Hpy8I	GTNNAC	6 cut(s)	130, 391, 447, 731, 940, 1222
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	5 cut(s)	262, 388, 688, 946, 1180
HpyCH4III	ACNGT	2 cut(s)	271, 1129
HpyCH4IV	ACGT	1 cut(s)	781
HpyCH4V	TGCA	7 cut(s)	434, 731, 753, 758, 1001, 1007, 1157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	536
HpyF3I	CTNAG	1 cut(s)	593
HpySE526I	ACGT	1 cut(s)	781
Hsp92II	CATG	7 cut(s)	192, 295, 443, 693, 804, 886, 1256
Kzo9I	GATC	3 cut(s)	65, 177, 607
LmnI	GCTCC	2 cut(s)	33, 48
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	7 cut(s)	334, 612, 654, 829, 858, 1144, 1165
MaeI	CTAG	4 cut(s)	11, 468, 792, 1242
MaeII	ACGT	1 cut(s)	781
MaeIII	GTNAC	2 cut(s)	784, 823
MalI	GATC	3 cut(s)	67, 179, 609
MboI	GATC	3 cut(s)	65, 177, 607
MfeI	CAATTG	1 cut(s)	759
MhlI	GDGCHC	4 cut(s)	30, 45, 733, 919
MluCI	AATT	8 cut(s)	307, 320, 363, 477, 759, 965, 986, 1016
MlyI	GAGTC	1 cut(s)	1079
MmeI	TCCRAC	1 cut(s)	205
MseI	TTAA	7 cut(s)	306, 476, 480, 551, 854, 899, 1077
MslI	CAYNNNNRTG	1 cut(s)	187
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	1 cut(s)	726
MspR9I	CCNGG	2 cut(s)	962, 1031
MunI	CAATTG	1 cut(s)	759
Mva1269I	GAATGC	1 cut(s)	1003
MvaI	CCWGG	2 cut(s)	962, 1031
MwoI	GCNNNNNNNGC	1 cut(s)	536
NcoI	CCATGG	1 cut(s)	882
NdeII	GATC	3 cut(s)	65, 177, 607
NlaIII	CATG	7 cut(s)	192, 295, 443, 693, 804, 886, 1256
NlaIV	GGNNCC	3 cut(s)	106, 249, 807
NspI	RCATGY	1 cut(s)	443
PacI	TTAATTAA	1 cut(s)	480
PctI	GAATGC	1 cut(s)	1003
PfeI	GAWTC	7 cut(s)	56, 491, 500, 520, 769, 887, 1208
Pfl23II	CGTACG	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	288
PleI	GAGTC	1 cut(s)	1079
PpsI	GAGTC	1 cut(s)	1079
PshBI	ATTAAT	1 cut(s)	476
Psp6I	CCWGG	2 cut(s)	960, 1029
PspGI	CCWGG	2 cut(s)	960, 1029
PspLI	CGTACG	1 cut(s)	266
PspN4I	GGNNCC	3 cut(s)	106, 249, 807
PspPI	GGNCC	2 cut(s)	247, 958
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	4 cut(s)	131, 268, 1070, 1203
RsaNI	GTAC	4 cut(s)	130, 267, 1069, 1202
RseI	CAYNNNNRTG	1 cut(s)	187
SaqAI	TTAA	7 cut(s)	306, 476, 480, 551, 854, 899, 1077
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	3 cut(s)	65, 177, 607
Sau96I	GGNCC	2 cut(s)	247, 958
SchI	GAGTC	1 cut(s)	1079
ScrFI	CCNGG	2 cut(s)	962, 1031
SduI	GDGCHC	4 cut(s)	30, 45, 733, 919
SfaNI	GCATC	7 cut(s)	334, 612, 654, 829, 858, 1144, 1165
SfcI	CTRYAG	1 cut(s)	1128
SmiMI	CAYNNNNRTG	1 cut(s)	187
Sse9I	AATT	8 cut(s)	307, 320, 363, 477, 759, 965, 986, 1016
SsiI	CCGC	3 cut(s)	5, 872, 1042
SspI	AATATT	1 cut(s)	474
SspMI	CTAG	4 cut(s)	11, 468, 792, 1242
StyD4I	CCNGG	2 cut(s)	960, 1029
StyI	CCWWGG	2 cut(s)	598, 882
TaaI	ACNGT	2 cut(s)	271, 1129
TaiI	ACGT	1 cut(s)	784
TaqI	TCGA	2 cut(s)	147, 606
TasI	AATT	8 cut(s)	307, 320, 363, 477, 759, 965, 986, 1016
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	7 cut(s)	56, 491, 500, 520, 769, 887, 1208
Tru1I	TTAA	7 cut(s)	306, 476, 480, 551, 854, 899, 1077
Tru9I	TTAA	7 cut(s)	306, 476, 480, 551, 854, 899, 1077
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	1 cut(s)	286
TspDTI	ATGAA	8 cut(s)	186, 500, 512, 761, 1029, 1046, 1164, 1199
TspRI	CASTG	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	729
VspI	ATTAAT	1 cut(s)	476
XapI	RAATTY	2 cut(s)	965, 1016
XceI	RCATGY	1 cut(s)	443
XspI	CTAG	4 cut(s)	11, 468, 792, 1242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.