Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0017789

Physical Location & Seq

Genomic Coordinates Reverse (-)

63349426 .. 63351508

Gene Structure 2083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG426100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGGAAGAAAATTTGATGATGCTATGGTTCAGAGCAGAATTGATTTATTTCTTACCCTTCAAGGGAAGAAGATTCAATTTGCTGTCATAGCCGTTCCAGCTCACTTTACCCAATCCCAAAGGTTGGCTACATTGGATGCAGCCACCATTGCAGGCCTCAATGTGGCTCGGCTAATCAATGAGCCTACTGCTGCAGCTATTGCCTTCAGTATGGCAAAGAGAGGAGAAAGCATTTTTGTTTTTGACATGGGTGGCGGTTCATATCTTCTTAGCACATTAACCACTAATGATGGCATTGTTGAGTTAAAGCATAGTGGAGGTACTCATGTGCTTATTGGACACTTGGCGGATAGGCTAAATGATCATTTCATCAGTTTGATGAAGAGGATATACAGGAAGGATGTCAAAAAATCAAAGAAGCTTGTGAGGAAGCTTTTAATGCAATGTGAGCAGGCTCAAAAAGCCTTGAGAACCCAGCCCCAAGTGCATTTGGACATTAAATCCATTATTGATGACCTCCTATTTGTTGATGGCTCTCCTCTCAGCCTTGGCATCGATCAAAATGGTATAATGGCAGAGTTTATTCCAAAGAACACCCGTATCCCGACAAAGATGCTTATGCTTGTTGAGTTTGACACATGGAAGGATGGCAATAGGACTTTGGAGGTCTATGCCGGTGCACGACCATTGACAAAGGATTGCATTGCAATTGGAGTGATTCATCTAAAACGTGTAACTACTAGACCATCATGGGAACCTCCCAAAGCAAGTGTTACATTTAGAGTTGATGCCATTGGCATCTTAAATGTGAAAGTAAAGGCGGAGGACACCATGGAATCTGCCTCCATAATGATTGACATCAGGGCACATTTCAGCTTGGAAAAGGTTGACAAGATGGTGAAGGAGGCCCAGGAATTCGCAGAAGAGGACGACAAATTGTTGAGGAACGCAGTTGCAAAGAATGAATTTCTCACCTACCTGTCACGAAAGCGGTGGCATTGGTTTCATCAGAAAAAGTACCGAGTTGAGATGGACTCCATTGACGAAGGGGTGGTTTTTAGCACAGTGAAGGAGACTTTAAAATGGTTAATGGATAATGAAGATGCAGAGGCAGATGACTTTAATGCCAAGATGAAGGCAGTGAAAGAGGTACTGGATCCAATCAAGGTTCACTATTCCCCTACAACTTCTAGTCAATCCCATGATGAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

404

Amino Acids

45.63

Weight (kDa)

8.57

Isoelectric Point (pI)

28.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MreB_Mbl	PF06723	14 - 103	7.8e-06	MreB/Mbl protein
HSP70	PF00012	21 - 170	1e-39	Hsp70 protein
HSP70	PF00012	170 - 389	2.2e-27	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017789)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0142581
rosa_laevigata	RLG00000019972
rosa_multiflora	Rmu_co8304105.1_g000001 Rmu_sc0004937.1_g000006
rosa_roxburghii	Rroxscaffold_2G00102470
rosa_rugosa	Rorug02G0374500
rosa_samantha	Rh2AG426100 Rh2AG426200 Rh2BG435800 Rh2CG412700 Rh2DG445600
rosa_wichuraiana	Rw2G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	124
AciI	CCGC	4 cut(s)	255, 347, 821, 991
AclWI	GGATC	2 cut(s)	1151, 1164
AcsI	RAATTY	3 cut(s)	11, 914, 965
AcuI	CTGAAG	1 cut(s)	190
AfaI	GTAC	3 cut(s)	322, 1019, 1152
AfiI	CCNNNNNNNGG	3 cut(s)	63, 124, 163
AflIII	ACRYGT	1 cut(s)	730
AgsI	TTSAA	2 cut(s)	62, 77
AjnI	CCWGG	1 cut(s)	909
AluBI	AGCT	5 cut(s)	101, 197, 421, 433, 876
AluI	AGCT	5 cut(s)	101, 197, 421, 433, 876
Alw21I	GWGCWC	1 cut(s)	682
Alw26I	GTCTC	1 cut(s)	1067
Alw44I	GTGCAC	1 cut(s)	678
AlwI	GGATC	2 cut(s)	1151, 1164
AoxI	GGCC	2 cut(s)	154, 906
ApaLI	GTGCAC	1 cut(s)	678
ApeKI	GCWGC	3 cut(s)	140, 191, 194
ApoI	RAATTY	3 cut(s)	11, 914, 965
ArsI	GACNNNNNNTTYG	2 cut(s)	506, 538
AspS9I	GGNCC	1 cut(s)	907
AsuHPI	GGTGA	2 cut(s)	910, 964
BaeGI	GKGCMC	2 cut(s)	682, 868
BaeI	ACNNNNGTAYC	4 cut(s)	312, 345, 583, 616
BamHI	GGATCC	1 cut(s)	1156
BarI	GAAGNNNNNNTAC	2 cut(s)	374, 406
Bbv12I	GWGCWC	1 cut(s)	682
BbvI	GCAGC	3 cut(s)	152, 178, 206
BccI	CCATC	6 cut(s)	284, 524, 641, 754, 889, 1024
BceAI	ACGGC	1 cut(s)	77
BcgI	CGANNNNNNTGC	2 cut(s)	595, 629
BciT130I	CCWGG	1 cut(s)	911
BciVI	GTATCC	1 cut(s)	611
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	1067
BfaI	CTAG	2 cut(s)	741, 1191
BfmI	CTRYAG	1 cut(s)	192
BfuI	GTATCC	1 cut(s)	611
BisI	GCNGC	3 cut(s)	141, 192, 195
BlsI	GCNGC	3 cut(s)	142, 193, 196
Bme1390I	CCNGG	1 cut(s)	911
BmgT120I	GGNCC	1 cut(s)	907
BmiI	GGNNCC	2 cut(s)	756, 1158
BmrFI	CCNGG	1 cut(s)	911
BmsI	GCATC	7 cut(s)	10, 127, 561, 603, 778, 807, 1093
BplI	GAGNNNNNCTC	2 cut(s)	1019, 1051
BpuEI	CTTGAG	1 cut(s)	487
Bsa29I	ATCGAT	1 cut(s)	555
BsaBI	GATNNNNATC	1 cut(s)	857
BsaJI	CCNNGG	3 cut(s)	547, 831, 909
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 124, 163
Bse118I	RCCGGY	1 cut(s)	674
Bse1I	ACTGG	1 cut(s)	1158
Bse3DI	GCAATG	3 cut(s)	147, 449, 702
Bse8I	GATNNNNATC	1 cut(s)	857
BseBI	CCWGG	1 cut(s)	911
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	3 cut(s)	547, 831, 909
BseGI	GGATG	3 cut(s)	142, 406, 652
BseJI	GATNNNNATC	1 cut(s)	857
BseLI	CCNNNNNNNGG	3 cut(s)	63, 124, 163
BseMI	GCAATG	3 cut(s)	147, 449, 702
BseMII	CTCAG	1 cut(s)	556
BseNI	ACTGG	1 cut(s)	1158
BseRI	GAGGAG	2 cut(s)	237, 528
BseSI	GKGCMC	2 cut(s)	682, 868
BseXI	GCAGC	3 cut(s)	152, 178, 206
BseYI	CCCAGC	1 cut(s)	474
BshFI	GGCC	2 cut(s)	156, 908
BshVI	ATCGAT	1 cut(s)	555
BsiHKAI	GWGCWC	1 cut(s)	682
BsiSI	CCGG	1 cut(s)	675
BslI	CCNNNNNNNGG	3 cut(s)	63, 124, 163
BsmAI	GTCTC	1 cut(s)	1067
BsnI	GGCC	2 cut(s)	156, 908
Bsp1286I	GDGCHC	2 cut(s)	682, 868
Bsp143I	GATC	3 cut(s)	361, 556, 1156
Bsp19I	CCATGG	1 cut(s)	831
BspACI	CCGC	4 cut(s)	255, 347, 821, 991
BspANI	GGCC	2 cut(s)	156, 908
BspCNI	CTCAG	1 cut(s)	555
BspDI	ATCGAT	1 cut(s)	555
BspLI	GGNNCC	2 cut(s)	756, 1158
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	2 cut(s)	1151, 1164
BsrDI	GCAATG	3 cut(s)	147, 449, 702
BsrFI	RCCGGY	1 cut(s)	674
BsrI	ACTGG	1 cut(s)	1158
BssAI	RCCGGY	1 cut(s)	674
BssECI	CCNNGG	3 cut(s)	547, 831, 909
BssMI	GATC	3 cut(s)	361, 556, 1156
BssT1I	CCWWGG	2 cut(s)	547, 831
Bst2UI	CCWGG	1 cut(s)	911
Bst4CI	ACNGT	1 cut(s)	1066
Bst6I	CTCTTC	2 cut(s)	377, 918
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	154, 453
BstDEI	CTNAG	2 cut(s)	269, 542
BstDSI	CCRYGG	1 cut(s)	831
BstF5I	GGATG	3 cut(s)	142, 406, 652
BstKTI	GATC	3 cut(s)	364, 559, 1159
BstMAI	GTCTC	1 cut(s)	1067
BstMBI	GATC	3 cut(s)	361, 556, 1156
BstMWI	GCNNNNNNNGC	8 cut(s)	89, 98, 149, 200, 439, 448, 461, 484
BstNI	CCWGG	1 cut(s)	911
BstSCI	CCNGG	1 cut(s)	909
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	2 cut(s)	682, 868
BstV1I	GCAGC	3 cut(s)	152, 178, 206
BstX2I	RGATCY	1 cut(s)	1156
BstYI	RGATCY	1 cut(s)	1156
Bsu15I	ATCGAT	1 cut(s)	555
BsuI	GTATCC	1 cut(s)	611
BsuRI	GGCC	2 cut(s)	156, 908
BsuTUI	ATCGAT	1 cut(s)	555
BtgI	CCRYGG	1 cut(s)	831
BtsCI	GGATG	3 cut(s)	142, 406, 652
BtsI	GCAGTG	1 cut(s)	1146
BtsIMutI	CAGTG	2 cut(s)	1071, 1146
Cac8I	GCNNGC	2 cut(s)	154, 453
Cfr10I	RCCGGY	1 cut(s)	674
Cfr13I	GGNCC	1 cut(s)	907
ClaI	ATCGAT	1 cut(s)	555
Csp6I	GTAC	3 cut(s)	321, 1018, 1151
CviAII	CATG	6 cut(s)	247, 326, 639, 750, 832, 1202
CviQI	GTAC	3 cut(s)	321, 1018, 1151
DdeI	CTNAG	2 cut(s)	269, 542
DpnI	GATC	3 cut(s)	363, 558, 1158
DpnII	GATC	3 cut(s)	361, 556, 1156
DraI	TTTAAA	1 cut(s)	1080
Eam1104I	CTCTTC	2 cut(s)	377, 918
EarI	CTCTTC	2 cut(s)	377, 918
EciI	GGCGGA	2 cut(s)	362, 836
Eco130I	CCWWGG	2 cut(s)	547, 831
Eco147I	AGGCCT	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	914
EcoRII	CCWGG	1 cut(s)	909
EcoT14I	CCWWGG	2 cut(s)	547, 831
ErhI	CCWWGG	2 cut(s)	547, 831
FaeI	CATG	6 cut(s)	250, 329, 642, 753, 835, 1205
FatI	CATG	6 cut(s)	246, 325, 638, 749, 831, 1201
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	3 cut(s)	141, 192, 195
FokI	GGATG	3 cut(s)	149, 413, 659
Fsp4HI	GCNGC	3 cut(s)	141, 192, 195
FspBI	CTAG	2 cut(s)	741, 1191
GluI	GCNGC	3 cut(s)	141, 192, 195
GsaI	CCCAGC	1 cut(s)	478
HaeIII	GGCC	2 cut(s)	156, 908
HapII	CCGG	1 cut(s)	675
Hin1II	CATG	6 cut(s)	250, 329, 642, 753, 835, 1205
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HindIII	AAGCTT	2 cut(s)	419, 431
HinfI	GANTC	4 cut(s)	73, 718, 836, 1034
HpaII	CCGG	1 cut(s)	675
HphI	GGTGA	2 cut(s)	910, 964
Hpy166II	GTNNAC	3 cut(s)	680, 889, 1171
Hpy188I	TCNGA	2 cut(s)	33, 1011
Hpy188III	TCNNGA	2 cut(s)	604, 984
Hpy8I	GTNNAC	3 cut(s)	680, 889, 1171
HpyAV	CCTTC	8 cut(s)	68, 214, 391, 637, 895, 1040, 1063, 1129
HpyCH4III	ACNGT	1 cut(s)	1066
HpyCH4IV	ACGT	1 cut(s)	730
HpyF10VI	GCNNNNNNNGC	8 cut(s)	89, 98, 149, 200, 439, 448, 461, 484
HpyF3I	CTNAG	2 cut(s)	269, 542
HpySE526I	ACGT	1 cut(s)	730
Hsp92II	CATG	6 cut(s)	250, 329, 642, 753, 835, 1205
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	361, 556, 1156
Lsp1109I	GCAGC	3 cut(s)	152, 178, 206
LweI	GCATC	7 cut(s)	10, 127, 561, 603, 778, 807, 1093
MaeI	CTAG	2 cut(s)	741, 1191
MaeII	ACGT	1 cut(s)	730
MaeIII	GTNAC	3 cut(s)	733, 772, 981
MalI	GATC	3 cut(s)	363, 558, 1158
MboI	GATC	3 cut(s)	361, 556, 1156
MboII	GAAGA	7 cut(s)	18, 79, 82, 257, 394, 935, 1112
MfeI	CAATTG	1 cut(s)	708
MflI	RGATCY	1 cut(s)	1156
MhlI	GDGCHC	2 cut(s)	682, 868
MluCI	AATT	7 cut(s)	11, 39, 77, 708, 914, 935, 965
MlyI	GAGTC	1 cut(s)	1028
MseI	TTAA	8 cut(s)	278, 305, 437, 498, 803, 1079, 1088, 1122
MspI	CCGG	1 cut(s)	675
MspR9I	CCNGG	1 cut(s)	911
MunI	CAATTG	1 cut(s)	708
MvaI	CCWGG	1 cut(s)	911
MwoI	GCNNNNNNNGC	8 cut(s)	89, 98, 149, 200, 439, 448, 461, 484
NcoI	CCATGG	1 cut(s)	831
NdeII	GATC	3 cut(s)	361, 556, 1156
NlaIII	CATG	6 cut(s)	250, 329, 642, 753, 835, 1205
NlaIV	GGNNCC	2 cut(s)	756, 1158
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	981
PceI	AGGCCT	1 cut(s)	156
PfeI	GAWTC	3 cut(s)	73, 718, 836
PflMI	CCANNNNNTGG	1 cut(s)	124
PkrI	GCNGC	3 cut(s)	142, 193, 196
PleI	GAGTC	1 cut(s)	1028
PpsI	GAGTC	1 cut(s)	1028
Psp6I	CCWGG	1 cut(s)	909
PspFI	CCCAGC	1 cut(s)	474
PspGI	CCWGG	1 cut(s)	909
PspN4I	GGNNCC	2 cut(s)	756, 1158
PspPI	GGNCC	1 cut(s)	907
PstI	CTGCAG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	1156
RsaI	GTAC	3 cut(s)	322, 1019, 1152
RsaNI	GTAC	3 cut(s)	321, 1018, 1151
SaqAI	TTAA	8 cut(s)	278, 305, 437, 498, 803, 1079, 1088, 1122
SatI	GCNGC	3 cut(s)	141, 192, 195
Sau3AI	GATC	3 cut(s)	361, 556, 1156
Sau96I	GGNCC	1 cut(s)	907
SchI	GAGTC	1 cut(s)	1028
ScrFI	CCNGG	1 cut(s)	911
SduI	GDGCHC	2 cut(s)	682, 868
SfaNI	GCATC	7 cut(s)	10, 127, 561, 603, 778, 807, 1093
SfcI	CTRYAG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
Sse9I	AATT	7 cut(s)	11, 39, 77, 708, 914, 935, 965
SseBI	AGGCCT	1 cut(s)	156
SsiI	CCGC	4 cut(s)	255, 347, 821, 991
SspMI	CTAG	2 cut(s)	741, 1191
StuI	AGGCCT	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	909
StyI	CCWWGG	2 cut(s)	547, 831
TaaI	ACNGT	1 cut(s)	1066
TaiI	ACGT	1 cut(s)	733
TaqI	TCGA	1 cut(s)	555
TasI	AATT	7 cut(s)	11, 39, 77, 708, 914, 935, 965
TfiI	GAWTC	3 cut(s)	73, 718, 836
Tru1I	TTAA	8 cut(s)	278, 305, 437, 498, 803, 1079, 1088, 1122
Tru9I	TTAA	8 cut(s)	278, 305, 437, 498, 803, 1079, 1088, 1122
TscAI	CASTG	2 cut(s)	1071, 1146
TseFI	GTSAC	1 cut(s)	981
TseI	GCWGC	3 cut(s)	140, 191, 194
Tsp45I	GTSAC	1 cut(s)	981
TspDTI	ATGAA	8 cut(s)	249, 358, 395, 710, 978, 995, 1113, 1148
TspRI	CASTG	2 cut(s)	1071, 1146
Van91I	CCANNNNNTGG	1 cut(s)	124
VneI	GTGCAC	1 cut(s)	678
XapI	RAATTY	3 cut(s)	11, 914, 965
XspI	CTAG	2 cut(s)	741, 1191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.