RLG00000022744

cell redox homeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0014849
Physical Location & Seq
Reverse (-)
11221610 .. 11223455
1846 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022744

Sequence Viewer

Length: 525 bp
ATGGAAATGCCAATCCCTTTCCTACAGTCCTACCCCACTCGTTATGAATCTGTGCCAGCAGTTTTGTACTTCGCTACCTATTCTGAGTTCACCAGTACCATGGTATATGAGTTTCTTCACGAGGATTTGAGTGAGCGATTCCCACATGTAGCAATCTACGAGTTCCTCCTTGATCCTAAGGAAGACGACTACGAAACAACACTGAAAAGTCTAAATGTTTCCTCTACTGTCAATGCGCCGGCATTCCATTTCTTTAAAAATGGGAAAAAGGTAGATGAGCTAGCCCGTGAGAGATTTGAATTTTATCAGTATGGCCGAGACTTGGAAAAGATTCTTGAGAAACTATACAACACTCAACCTGCAATAAGTTCATCTGGAACTGGGAGAAAAACTACTCAAGAATTACAACCTGTGAAAGATAAGGATAGCAAAGGAGTTAGAGGGCAGCGAGGGAGGAAAGTAGGGGATGCCGCAATGATTTCGAAACAGACACAGAGTGGGGGCAATCATCAGTTTGTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
TPR_1 TPR_11 TPR_16 TPR_8 Thioredoxin

Protein Analysis

175

Amino Acids

20.02

Weight (kDa)

6.11

Isoelectric Point (pI)

33.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 367
AciI CCGC 1 cut(s) 471
AclWI GGATC 1 cut(s) 167
AcoI YGGCCR 1 cut(s) 313
AcsI RAATTY 1 cut(s) 299
AdeI CACNNNGTG 1 cut(s) 497
AfaI GTAC 2 cut(s) 68, 97
AfiI CCNNNNNNNGG 1 cut(s) 322
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 1 cut(s) 299
AluBI AGCT 1 cut(s) 280
AluI AGCT 1 cut(s) 280
Alw26I GTCTC 1 cut(s) 312
AlwI GGATC 1 cut(s) 167
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 1 cut(s) 445
ApoI RAATTY 1 cut(s) 299
Asp700I GAANNNNTTC 1 cut(s) 330
AspLEI GCGC 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 82
AsuII TTCGAA 1 cut(s) 482
AsuNHI GCTAGC 1 cut(s) 280
AxyI CCTNAGG 1 cut(s) 177
BauI CACGAG 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 457
BcgI CGANNNNNNTGC 2 cut(s) 462, 496
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 367
BisI GCNGC 2 cut(s) 446, 471
BlsI GCNGC 2 cut(s) 447, 472
BmrI ACTGGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 457
BmtI GCTAGC 1 cut(s) 284
BmuI ACTGGG 1 cut(s) 390
BpiI GAAGAC 1 cut(s) 189
Bpu14I TTCGAA 1 cut(s) 482
BpuEI CTTGAG 2 cut(s) 356, 381
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse118I RCCGGY 1 cut(s) 238
Bse1I ACTGG 2 cut(s) 93, 385
Bse21I CCTNAGG 1 cut(s) 177
Bse3DI GCAATG 1 cut(s) 480
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 472
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 2 cut(s) 93, 385
BseXI GCAGC 1 cut(s) 457
BshFI GGCC 1 cut(s) 315
BsiSI CCGG 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 1 cut(s) 312
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 1 cut(s) 315
Bsp119I TTCGAA 1 cut(s) 482
Bsp143I GATC 1 cut(s) 172
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 1 cut(s) 471
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 1 cut(s) 76
BspMI ACCTGC 1 cut(s) 367
BspOI GCTAGC 1 cut(s) 284
BspPI GGATC 1 cut(s) 167
BspT104I TTCGAA 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 480
BsrFI RCCGGY 1 cut(s) 238
BsrI ACTGG 2 cut(s) 93, 385
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 1 cut(s) 172
BssSI CACGAG 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 99
Bst2BI CACGAG 1 cut(s) 119
Bst4CI ACNGT 2 cut(s) 27, 229
BstBI TTCGAA 1 cut(s) 482
BstC8I GCNNGC 3 cut(s) 57, 240, 282
BstDEI CTNAG 2 cut(s) 84, 177
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 472
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 1 cut(s) 172
BstNSI RCATGY 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 457
BstV2I GAAGAC 1 cut(s) 189
BstXI CCANNNNNNTGG 1 cut(s) 100
Bsu36I CCTNAGG 1 cut(s) 177
BsuRI GGCC 1 cut(s) 315
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 472
BtsIMutI CAGTG 1 cut(s) 200
BveI ACCTGC 1 cut(s) 367
Cac8I GCNNGC 3 cut(s) 57, 240, 282
CfoI GCGC 1 cut(s) 238
Cfr10I RCCGGY 1 cut(s) 238
Csp6I GTAC 2 cut(s) 67, 96
CviAII CATG 2 cut(s) 100, 146
CviJI RGCY 3 cut(s) 280, 284, 315
CviKI_1 RGCY 3 cut(s) 280, 284, 315
CviQI GTAC 2 cut(s) 67, 96
DdeI CTNAG 2 cut(s) 84, 177
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
DraI TTTAAA 1 cut(s) 256
DraIII CACNNNGTG 1 cut(s) 497
EaeI YGGCCR 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 99
Eco81I CCTNAGG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 2 cut(s) 103, 149
FaiI YATR 7 cut(s) 45, 101, 106, 108, 147, 312, 346
FatI CATG 2 cut(s) 99, 145
Fnu4HI GCNGC 2 cut(s) 446, 471
FokI GGATG 1 cut(s) 479
Fsp4HI GCNGC 2 cut(s) 446, 471
FspBI CTAG 1 cut(s) 281
GlaI GCGC 1 cut(s) 237
GluI GCNGC 2 cut(s) 446, 471
HaeIII GGCC 1 cut(s) 315
HapII CCGG 1 cut(s) 239
HhaI GCGC 1 cut(s) 238
Hin1II CATG 2 cut(s) 103, 149
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HinfI GANTC 3 cut(s) 47, 138, 331
HpaII CCGG 1 cut(s) 239
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 4 cut(s) 119, 335, 375, 398
Hpy8I GTNNAC 1 cut(s) 90
HpyCH4III ACNGT 2 cut(s) 27, 229
HpyCH4V TGCA 1 cut(s) 362
HpyF3I CTNAG 2 cut(s) 84, 177
Hsp92II CATG 2 cut(s) 103, 149
HspAI GCGC 1 cut(s) 236
KroI GCCGGC 1 cut(s) 238
KroNI GCCGGC 1 cut(s) 240
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 7 cut(s) 69, 106, 252, 360, 366, 372, 423
Lsp1109I GCAGC 1 cut(s) 457
LweI GCATC 1 cut(s) 457
MaeI CTAG 1 cut(s) 281
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 2 cut(s) 107, 194
MluCI AATT 3 cut(s) 299, 401, 520
MnlI CCTC 6 cut(s) 115, 176, 232, 434, 443, 447
MroNI GCCGGC 1 cut(s) 238
MroXI GAANNNNTTC 1 cut(s) 330
MseI TTAA 2 cut(s) 255, 523
MspI CCGG 1 cut(s) 239
Mva1269I GAATGC 1 cut(s) 242
NaeI GCCGGC 1 cut(s) 240
NcoI CCATGG 1 cut(s) 99
NdeII GATC 1 cut(s) 172
NgoMIV GCCGGC 1 cut(s) 238
NheI GCTAGC 1 cut(s) 280
NlaIII CATG 2 cut(s) 103, 149
NmeAIII GCCGAG 1 cut(s) 341
NspI RCATGY 1 cut(s) 149
NspV TTCGAA 1 cut(s) 482
PciI ACATGT 1 cut(s) 145
PctI GAATGC 1 cut(s) 242
PdiI GCCGGC 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 330
PfeI GAWTC 3 cut(s) 47, 138, 331
PkrI GCNGC 2 cut(s) 447, 472
PscI ACATGT 1 cut(s) 145
RsaI GTAC 2 cut(s) 68, 97
RsaNI GTAC 2 cut(s) 67, 96
SaqAI TTAA 2 cut(s) 255, 523
SatI GCNGC 2 cut(s) 446, 471
Sau3AI GATC 1 cut(s) 172
SetI ASST 5 cut(s) 80, 273, 282, 361, 412
SfaNI GCATC 1 cut(s) 457
SfcI CTRYAG 1 cut(s) 23
SfuI TTCGAA 1 cut(s) 482
SmlI CTYRAG 2 cut(s) 335, 396
SmoI CTYRAG 2 cut(s) 335, 396
Sse9I AATT 3 cut(s) 299, 401, 520
SsiI CCGC 1 cut(s) 471
SspMI CTAG 1 cut(s) 281
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 2 cut(s) 27, 229
TaqI TCGA 1 cut(s) 482
TasI AATT 3 cut(s) 299, 401, 520
TatI WGTACW 1 cut(s) 66
TauI GCSGC 1 cut(s) 473
TfiI GAWTC 3 cut(s) 47, 138, 331
Tru1I TTAA 2 cut(s) 255, 523
Tru9I TTAA 2 cut(s) 255, 523
TscAI CASTG 1 cut(s) 207
TseI GCWGC 1 cut(s) 445
TspDTI ATGAA 2 cut(s) 60, 360
TspRI CASTG 1 cut(s) 207
XapI RAATTY 1 cut(s) 299
XceI RCATGY 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 330
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.