Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0014849

Physical Location & Seq

Genomic Coordinates Forward (+)

11321330 .. 11325266

Gene Structure 3937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022748

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAATGGTAGCAATCATAATAGTTTTGCAAGCTGTGAGCTCATTCTATCAAGGGAGGAGTATAATTTGGCTGTTAACAGAATTCAAGATGAATCTGTGCCAGCAGTTTTGTGCTTCACTACCTATTCTGAGTTCTCCAGTACCTTGGTATATGAGTTTCTTCACGAGGATTTGAGTGAGCGATTCCCACATGTAGCAATCTACGAGTTCCTCCTTGATCCTAAGGAAGACGACTACGAAACAACACTGAAAAGTCTAAATATTTCCTCTACGGTCAATGCGCCGACATTCCATTTCTTTAAAAATGGGAAACAGGTAGAAGAGCTAGCCTGTGAGAGATTTGAATTTTATCAGTATGCCAGAGACTTGGAAAAGATTCTTGAGAAACTGTACAACACTCAACCTGCAATAAGTTCATCTGGAACTGGGAGAAAAACTACTCAAGAATTACAACTTGTGAAAGATAAGGATAGCAAAGGAGTTAGAGGGCAGCGAGGGAGGAAAGTGAGGGGTGCCGCAATGATTCCAAACACACACAGAGTGGGGGCAATCATCAGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

188

Amino Acids

21.33

Weight (kDa)

5.77

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014849)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0492811
rosa_laevigata	RLG00000022744 RLG00000022745 RLG00000022746 RLG00000022748
rosa_multiflora	Rmu_sc0002343.1_g000012
rosa_roxburghii	Rroxscaffold_6G00392030
rosa_rugosa	Rorug03G0257500 Rorug03G0257600 Rorug03G0257600 Rorug03G0257900 Rorug03G0258100
rosa_samantha	Rh3AG306600 Rh3DG346700 Rh3DG347200
rosa_wichuraiana	Rw3G026990 Rw3G027010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	412
AccB1I	GGYRCC	1 cut(s)	512
AciI	CCGC	1 cut(s)	516
AclWI	GGATC	1 cut(s)	212
AcsI	RAATTY	2 cut(s)	81, 344
AdeI	CACNNNGTG	1 cut(s)	541
AfaI	GTAC	2 cut(s)	142, 392
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	2 cut(s)	86, 344
AluBI	AGCT	3 cut(s)	33, 40, 325
AluI	AGCT	3 cut(s)	33, 40, 325
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	490
ApoI	RAATTY	2 cut(s)	81, 344
Asp700I	GAANNNNTTC	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	283
AsuNHI	GCTAGC	1 cut(s)	325
AxyI	CCTNAGG	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	512
BanII	GRGCYC	1 cut(s)	42
BauI	CACGAG	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	502
BcoDI	GTCTC	1 cut(s)	357
BfaI	CTAG	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	412
BisI	GCNGC	2 cut(s)	491, 516
BlsI	GCNGC	2 cut(s)	492, 517
BmiI	GGNNCC	1 cut(s)	514
BmrI	ACTGGG	1 cut(s)	435
BmtI	GCTAGC	1 cut(s)	329
BmuI	ACTGGG	1 cut(s)	435
BpiI	GAAGAC	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	121
BpuEI	CTTGAG	2 cut(s)	401, 426
BsaJI	CCNNGG	1 cut(s)	144
Bse1I	ACTGG	2 cut(s)	138, 430
Bse21I	CCTNAGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	525
BseDI	CCNNGG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	2 cut(s)	138, 430
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	502
BshNI	GGYRCC	1 cut(s)	512
BsiHKAI	GWGCWC	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	1 cut(s)	516
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	514
BspMI	ACCTGC	1 cut(s)	412
BspOI	GCTAGC	1 cut(s)	329
BspPI	GGATC	1 cut(s)	212
BspQI	GCTCTTC	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	512
BsrDI	GCAATG	1 cut(s)	525
BsrGI	TGTACA	1 cut(s)	390
BsrI	ACTGG	2 cut(s)	138, 430
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	1 cut(s)	217
BssSI	CACGAG	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	164
Bst4CI	ACNGT	2 cut(s)	274, 390
Bst6I	CTCTTC	1 cut(s)	315
BstAUI	TGTACA	1 cut(s)	390
BstC8I	GCNNGC	3 cut(s)	31, 102, 327
BstDEI	CTNAG	2 cut(s)	129, 222
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	502
BstV2I	GAAGAC	1 cut(s)	234
BstXI	CCANNNNNNTGG	2 cut(s)	145, 367
Bsu36I	CCTNAGG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	245
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	3 cut(s)	31, 102, 327
CfoI	GCGC	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	141, 391
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	5 cut(s)	33, 40, 71, 325, 329
CviKI_1	RGCY	5 cut(s)	33, 40, 71, 325, 329
CviQI	GTAC	2 cut(s)	141, 391
DdeI	CTNAG	2 cut(s)	129, 222
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
DraI	TTTAAA	1 cut(s)	301
DraIII	CACNNNGTG	1 cut(s)	541
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	42
Eco53kI	GAGCTC	1 cut(s)	40
Eco81I	CCTNAGG	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	1 cut(s)	194
FaiI	YATR	6 cut(s)	18, 63, 151, 153, 192, 357
FatI	CATG	1 cut(s)	190
Fnu4HI	GCNGC	2 cut(s)	491, 516
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	2 cut(s)	491, 516
FspBI	CTAG	1 cut(s)	326
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	2 cut(s)	491, 516
GsuI	CTGGAG	1 cut(s)	121
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	1 cut(s)	194
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	4 cut(s)	92, 183, 376, 523
HpaI	GTTAAC	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	5 cut(s)	86, 164, 380, 420, 443
Hpy8I	GTNNAC	1 cut(s)	76
HpyCH4III	ACNGT	2 cut(s)	274, 390
HpyCH4V	TGCA	2 cut(s)	29, 407
HpyF3I	CTNAG	2 cut(s)	129, 222
Hsp92II	CATG	1 cut(s)	194
HspAI	GCGC	1 cut(s)	281
KspAI	GTTAAC	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	217
LguI	GCTCTTC	1 cut(s)	315
LpnPI	CCDG	8 cut(s)	114, 151, 299, 343, 373, 405, 411, 417
Lsp1109I	GCAGC	1 cut(s)	502
MaeI	CTAG	1 cut(s)	326
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	3 cut(s)	152, 239, 332
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	4 cut(s)	64, 81, 344, 446
MnlI	CCTC	8 cut(s)	49, 160, 221, 277, 479, 488, 492, 501
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	2 cut(s)	75, 300
NdeII	GATC	1 cut(s)	217
NheI	GCTAGC	1 cut(s)	325
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	1 cut(s)	514
NspI	RCATGY	1 cut(s)	194
PciI	ACATGT	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	4 cut(s)	92, 183, 376, 523
PkrI	GCNGC	2 cut(s)	492, 517
PscI	ACATGT	1 cut(s)	190
Psp124BI	GAGCTC	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	514
RsaI	GTAC	2 cut(s)	142, 392
RsaNI	GTAC	2 cut(s)	141, 391
SacI	GAGCTC	1 cut(s)	42
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	75, 300
SatI	GCNGC	2 cut(s)	491, 516
Sau3AI	GATC	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	7 cut(s)	35, 42, 125, 146, 318, 327, 406
SmlI	CTYRAG	2 cut(s)	380, 441
SmoI	CTYRAG	2 cut(s)	380, 441
Sse9I	AATT	4 cut(s)	64, 81, 344, 446
SsiI	CCGC	1 cut(s)	516
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	1 cut(s)	326
SstI	GAGCTC	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	274, 390
TasI	AATT	4 cut(s)	64, 81, 344, 446
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	1 cut(s)	518
TfiI	GAWTC	4 cut(s)	92, 183, 376, 523
Tru1I	TTAA	2 cut(s)	75, 300
Tru9I	TTAA	2 cut(s)	75, 300
TscAI	CASTG	1 cut(s)	252
TseI	GCWGC	1 cut(s)	490
TspDTI	ATGAA	3 cut(s)	17, 105, 405
TspRI	CASTG	1 cut(s)	252
XapI	RAATTY	2 cut(s)	81, 344
XceI	RCATGY	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.