Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0014849

Physical Location & Seq

Genomic Coordinates Forward (+)

11297299 .. 11308150

Gene Structure 10852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022746

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGATGAATTCCAGGGGTTTGTTTGTTGCTCTTATTCATCACCATGGTAAGCTTTCGACGTCCAATTTCTTTGCCGCCCCAAACCATCATTATCATTTTCTGCAACACCGCCTTCTCCACTCATCACCATCCCCAAACCTACTCGTGAAAGCCTTCACGACAAAGGAAGACTATGATTTGGAAGTCAAAAGAGTTCAAGATCAATCGTTGCCAGCAATTTTCTGTGTCACTACATACTCTGAGCCCTTGTGTTTTTATGTAGCTAGACACCTTAGGAACATGAATCACCGATTCCCAAATGTAGCAATATCTGAATTCGTTCTTGATGCTAAGGCCGACAACTATAAAAGCACACTGAAATCTCTTGGTATTTCCTATACGCCAAGCTTCCATTTTTTTAAGAATGGAAAAAAGGTAAATAAGGTAGGTCTTAAGAGGCTCAGAACGGATGCTGAGGCTTATGTCGAATGCTTGAAAAGGATTGTTGAACAACTCTATAACTTTCAACCTACAAAGAGTTCATCTAGCAGGGAGAACAAGAGAACTACTAAAGGAAGTGATGTAGAACGTCCTAAAAAAGTTTCAGGTTTTGCAAGCTGTGAGCTCATTCTATCAACGGAGGAATATAATTTGGCTGTTAACAGAATTCAAGATGAATCTGTGCCAGCAGTTTTGTACTTCGCTACCTATTCTGAGTTCACCAGTACCATGGTATATGAGTTTCTTCACGAGGATTTGAGTGAGCGATTCCCACATGTAGCAATCTACGAGTTCCTCCTTGATCCTAAGGAAGACGACTACGAAACAACACTGAAAAGTCTAAATATTTCCTCTATCGTCAATGCGCCGATATTCCATTTCTTTAAAAATGGGAAAAAGGTAGATGAGCTAGCCTATGAGAGATTTGTTGAACTTTATCAGTATGGCAGAGACTTGGAAAAGATTCTTGAGAAACTATACAACACTCAACCTGCAATAAGTTCATCTGGAACTGGGAGAAAAACTACTCAAGAATTACAACCTGTGAAAGATAAGGATAGCAAAGGAGTTAGAGGGCAGCGAGGGAGGAAAGTGAGGGGTGCCGCAATGATTTCCAAACAGACACAGAGTGGGGGCAATCATCAGTTTGTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

379

Amino Acids

43.37

Weight (kDa)

9.19

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014849)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0492811
rosa_laevigata	RLG00000022744 RLG00000022745 RLG00000022746 RLG00000022748
rosa_multiflora	Rmu_sc0002343.1_g000012
rosa_roxburghii	Rroxscaffold_6G00392030
rosa_rugosa	Rorug03G0257500 Rorug03G0257600 Rorug03G0257600 Rorug03G0257900 Rorug03G0258100
rosa_samantha	Rh3AG306600 Rh3DG346700 Rh3DG347200
rosa_wichuraiana	Rw3G026990 Rw3G027010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	62
Acc36I	ACCTGC	1 cut(s)	979
AccB1I	GGYRCC	1 cut(s)	1079
AciI	CCGC	3 cut(s)	75, 109, 1083
AclWI	GGATC	1 cut(s)	776
AcsI	RAATTY	3 cut(s)	7, 314, 645
AcyI	GRCGYC	1 cut(s)	59
AdeI	CACNNNGTG	1 cut(s)	1109
AfaI	GTAC	2 cut(s)	677, 706
AflII	CTTAAG	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	754
AgsI	TTSAA	6 cut(s)	197, 475, 488, 506, 650, 911
AjnI	CCWGG	1 cut(s)	11
AluBI	AGCT	6 cut(s)	52, 263, 387, 597, 604, 889
AluI	AGCT	6 cut(s)	52, 263, 387, 597, 604, 889
Alw21I	GWGCWC	1 cut(s)	606
Alw26I	GTCTC	1 cut(s)	924
AlwI	GGATC	1 cut(s)	776
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	1 cut(s)	1057
ApoI	RAATTY	3 cut(s)	7, 314, 645
Asp700I	GAANNNNTTC	3 cut(s)	152, 318, 942
AspLEI	GCGC	1 cut(s)	847
AsuHPI	GGTGA	4 cut(s)	32, 117, 278, 691
AsuNHI	GCTAGC	1 cut(s)	889
AxyI	CCTNAGG	2 cut(s)	272, 786
BanI	GGYRCC	1 cut(s)	1079
BanII	GRGCYC	2 cut(s)	246, 606
BauI	CACGAG	2 cut(s)	143, 728
BbsI	GAAGAC	2 cut(s)	174, 798
Bbv12I	GWGCWC	1 cut(s)	606
BbvCI	CCTCAGC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	1069
BccI	CCATC	2 cut(s)	93, 136
BciT130I	CCWGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	924
BfaI	CTAG	3 cut(s)	264, 525, 890
BfrI	CTTAAG	1 cut(s)	431
BfuAI	ACCTGC	1 cut(s)	979
BisI	GCNGC	3 cut(s)	75, 1058, 1083
BlsI	GCNGC	3 cut(s)	76, 1059, 1084
Bme1390I	CCNGG	1 cut(s)	13
BmiI	GGNNCC	1 cut(s)	1081
BmrFI	CCNGG	1 cut(s)	13
BmrI	ACTGGG	1 cut(s)	1002
BmsI	GCATC	2 cut(s)	316, 439
BmtI	GCTAGC	1 cut(s)	893
BmuI	ACTGGG	1 cut(s)	1002
BpiI	GAAGAC	2 cut(s)	174, 798
Bpu10I	CCTNAGC	2 cut(s)	330, 453
BpuEI	CTTGAG	2 cut(s)	968, 993
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	3 cut(s)	12, 43, 708
Bse1I	ACTGG	2 cut(s)	702, 997
Bse21I	CCTNAGG	2 cut(s)	272, 786
Bse3DI	GCAATG	1 cut(s)	1092
BseBI	CCWGG	1 cut(s)	13
BseDI	CCNNGG	3 cut(s)	12, 43, 708
BseGI	GGATG	2 cut(s)	128, 454
BseMI	GCAATG	1 cut(s)	1092
BseMII	CTCAG	4 cut(s)	231, 444, 454, 684
BseNI	ACTGG	2 cut(s)	702, 997
BseXI	GCAGC	1 cut(s)	1069
BshFI	GGCC	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	1079
BsiHKAI	GWGCWC	1 cut(s)	606
BsmAI	GTCTC	1 cut(s)	924
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	1 cut(s)	335
Bsp1286I	GDGCHC	2 cut(s)	246, 606
Bsp143I	GATC	2 cut(s)	199, 781
Bsp19I	CCATGG	2 cut(s)	43, 708
BspACI	CCGC	3 cut(s)	75, 109, 1083
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	4 cut(s)	232, 445, 453, 685
BspLI	GGNNCC	1 cut(s)	1081
BspMI	ACCTGC	1 cut(s)	979
BspOI	GCTAGC	1 cut(s)	893
BspPI	GGATC	1 cut(s)	776
BspT107I	GGYRCC	1 cut(s)	1079
BspTI	CTTAAG	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	1092
BsrI	ACTGG	2 cut(s)	702, 997
BssECI	CCNNGG	3 cut(s)	12, 43, 708
BssMI	GATC	2 cut(s)	199, 781
BssNI	GRCGYC	1 cut(s)	59
BssSI	CACGAG	2 cut(s)	143, 728
BssT1I	CCWWGG	2 cut(s)	43, 708
Bst2BI	CACGAG	2 cut(s)	143, 728
Bst2UI	CCWGG	1 cut(s)	13
BstACI	GRCGYC	1 cut(s)	59
BstAFI	CTTAAG	1 cut(s)	431
BstC8I	GCNNGC	4 cut(s)	213, 595, 666, 891
BstDEI	CTNAG	7 cut(s)	240, 272, 330, 440, 453, 693, 786
BstDSI	CCRYGG	2 cut(s)	43, 708
BstF5I	GGATG	2 cut(s)	128, 454
BstHHI	GCGC	1 cut(s)	847
BstKTI	GATC	2 cut(s)	202, 784
BstMAI	GTCTC	1 cut(s)	924
BstMBI	GATC	2 cut(s)	199, 781
BstNI	CCWGG	1 cut(s)	13
BstNSI	RCATGY	1 cut(s)	758
BstSCI	CCNGG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	1069
BstV2I	GAAGAC	2 cut(s)	174, 798
BstXI	CCANNNNNNTGG	1 cut(s)	709
Bsu36I	CCTNAGG	2 cut(s)	272, 786
BsuRI	GGCC	1 cut(s)	335
BtgI	CCRYGG	2 cut(s)	43, 708
BtsCI	GGATG	2 cut(s)	128, 454
BtsIMutI	CAGTG	2 cut(s)	353, 809
BveI	ACCTGC	1 cut(s)	979
Cac8I	GCNNGC	4 cut(s)	213, 595, 666, 891
CfoI	GCGC	1 cut(s)	847
Csp6I	GTAC	2 cut(s)	676, 705
CviAII	CATG	4 cut(s)	44, 280, 709, 755
CviQI	GTAC	2 cut(s)	676, 705
DdeI	CTNAG	7 cut(s)	240, 272, 330, 440, 453, 693, 786
DpnI	GATC	2 cut(s)	201, 783
DpnII	GATC	2 cut(s)	199, 781
DraI	TTTAAA	1 cut(s)	865
DraIII	CACNNNGTG	1 cut(s)	1109
Ecl136II	GAGCTC	1 cut(s)	604
Eco130I	CCWWGG	2 cut(s)	43, 708
Eco24I	GRGCYC	2 cut(s)	246, 606
Eco53kI	GAGCTC	1 cut(s)	604
Eco81I	CCTNAGG	2 cut(s)	272, 786
EcoICRI	GAGCTC	1 cut(s)	604
EcoRI	GAATTC	3 cut(s)	7, 314, 645
EcoRII	CCWGG	1 cut(s)	11
EcoT14I	CCWWGG	2 cut(s)	43, 708
EcoT38I	GRGCYC	2 cut(s)	246, 606
ErhI	CCWWGG	2 cut(s)	43, 708
FaeI	CATG	4 cut(s)	47, 283, 712, 758
FatI	CATG	4 cut(s)	43, 279, 708, 754
Fnu4HI	GCNGC	3 cut(s)	75, 1058, 1083
FokI	GGATG	2 cut(s)	115, 461
FriOI	GRGCYC	2 cut(s)	246, 606
Fsp4HI	GCNGC	3 cut(s)	75, 1058, 1083
FspBI	CTAG	3 cut(s)	264, 525, 890
GlaI	GCGC	1 cut(s)	846
GluI	GCNGC	3 cut(s)	75, 1058, 1083
HaeIII	GGCC	1 cut(s)	335
HhaI	GCGC	1 cut(s)	847
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	4 cut(s)	47, 283, 712, 758
Hin6I	GCGC	1 cut(s)	845
HinP1I	GCGC	1 cut(s)	845
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HindIII	AAGCTT	2 cut(s)	50, 385
HinfI	GANTC	5 cut(s)	283, 291, 656, 747, 943
HpaI	GTTAAC	1 cut(s)	640
HphI	GGTGA	4 cut(s)	32, 117, 278, 691
Hpy166II	GTNNAC	2 cut(s)	640, 699
Hpy188I	TCNGA	4 cut(s)	241, 313, 443, 694
Hpy188III	TCNNGA	9 cut(s)	145, 157, 197, 323, 650, 728, 947, 987, 1010
Hpy8I	GTNNAC	2 cut(s)	640, 699
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	122, 163
HpyCH4IV	ACGT	2 cut(s)	59, 568
HpyCH4V	TGCA	3 cut(s)	103, 593, 974
HpyF3I	CTNAG	7 cut(s)	240, 272, 330, 440, 453, 693, 786
HpySE526I	ACGT	2 cut(s)	59, 568
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	4 cut(s)	47, 283, 712, 758
HspAI	GCGC	1 cut(s)	845
KspAI	GTTAAC	1 cut(s)	640
Kzo9I	GATC	2 cut(s)	199, 781
Lsp1109I	GCAGC	1 cut(s)	1069
LweI	GCATC	2 cut(s)	316, 439
MaeI	CTAG	3 cut(s)	264, 525, 890
MaeII	ACGT	2 cut(s)	59, 568
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	201, 783
MboI	GATC	2 cut(s)	199, 781
MboII	GAAGA	3 cut(s)	179, 716, 803
MhlI	GDGCHC	2 cut(s)	246, 606
MluCI	AATT	8 cut(s)	7, 64, 216, 314, 628, 645, 1013, 1132
MroXI	GAANNNNTTC	3 cut(s)	152, 318, 942
MseI	TTAA	5 cut(s)	399, 432, 639, 864, 1135
MslI	CAYNNNNRTG	1 cut(s)	42
MspCI	CTTAAG	1 cut(s)	431
MspR9I	CCNGG	1 cut(s)	13
Mva1269I	GAATGC	1 cut(s)	473
MvaI	CCWGG	1 cut(s)	13
NcoI	CCATGG	2 cut(s)	43, 708
NdeII	GATC	2 cut(s)	199, 781
NheI	GCTAGC	1 cut(s)	889
NlaIII	CATG	4 cut(s)	47, 283, 712, 758
NlaIV	GGNNCC	1 cut(s)	1081
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	758
PciI	ACATGT	1 cut(s)	754
PctI	GAATGC	1 cut(s)	473
PdmI	GAANNNNTTC	3 cut(s)	152, 318, 942
PfeI	GAWTC	5 cut(s)	283, 291, 656, 747, 943
PkrI	GCNGC	3 cut(s)	76, 1059, 1084
PscI	ACATGT	1 cut(s)	754
Psp124BI	GAGCTC	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	1081
RsaI	GTAC	2 cut(s)	677, 706
RsaNI	GTAC	2 cut(s)	676, 705
RseI	CAYNNNNRTG	1 cut(s)	42
SacI	GAGCTC	1 cut(s)	606
SaqAI	TTAA	5 cut(s)	399, 432, 639, 864, 1135
SatI	GCNGC	3 cut(s)	75, 1058, 1083
Sau3AI	GATC	2 cut(s)	199, 781
ScrFI	CCNGG	1 cut(s)	13
SduI	GDGCHC	2 cut(s)	246, 606
SfaNI	GCATC	2 cut(s)	316, 439
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	3 cut(s)	431, 947, 1008
SmoI	CTYRAG	3 cut(s)	431, 947, 1008
Sse9I	AATT	8 cut(s)	7, 64, 216, 314, 628, 645, 1013, 1132
SsiI	CCGC	3 cut(s)	75, 109, 1083
SspI	AATATT	1 cut(s)	826
SspMI	CTAG	3 cut(s)	264, 525, 890
SstI	GAGCTC	1 cut(s)	606
StyD4I	CCNGG	1 cut(s)	11
StyI	CCWWGG	2 cut(s)	43, 708
TaiI	ACGT	2 cut(s)	62, 571
TaqI	TCGA	2 cut(s)	56, 465
TasI	AATT	8 cut(s)	7, 64, 216, 314, 628, 645, 1013, 1132
TatI	WGTACW	1 cut(s)	675
TauI	GCSGC	2 cut(s)	77, 1085
TfiI	GAWTC	5 cut(s)	283, 291, 656, 747, 943
Tru1I	TTAA	5 cut(s)	399, 432, 639, 864, 1135
Tru9I	TTAA	5 cut(s)	399, 432, 639, 864, 1135
TscAI	CASTG	2 cut(s)	360, 816
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	1 cut(s)	1057
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	6 cut(s)	20, 26, 296, 510, 669, 972
TspGWI	ACGGA	2 cut(s)	461, 632
TspRI	CASTG	2 cut(s)	360, 816
Vha464I	CTTAAG	1 cut(s)	431
XapI	RAATTY	3 cut(s)	7, 314, 645
XceI	RCATGY	1 cut(s)	758
XmnI	GAANNNNTTC	3 cut(s)	152, 318, 942
XspI	CTAG	3 cut(s)	264, 525, 890
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.