Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002343.1

Orthogroup ID

OG0014849

Physical Location & Seq

Genomic Coordinates Reverse (-)

71621 .. 85632

Gene Structure 14012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002343.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

atgatgaattccaggggtttgtttgttgctcttattcatcaccatcgtaagctttcgacgtccaatttctttgccgccccaaaccatcattatcattttctgcaacaccgccttctccactcatcaccatccccaaacctactcgttaaagccttcgcgacaaaggaagactatgatttggaagttaaaagagttcaagatcaatcgttgccagcaattttctgcgtcactacatactctgagcccttgtgtttttatgtagctagacaccttaggaacatgaatcaccgattcccaaatgtagcaatatctgaattcgttcttgatgctaaggccgacaactataaaagcacactgaaatctcttggtatttcctatacgccaagcttccatttttttaagaatggaaaaaaggtaaataaggtaggtcttaagaggctcagaacggatgctgaggcttatgtcgaatgcttgaaaaggattgttgaacaactctataactttcaacctacaaagagttcatctagcagggagaacaagagaactactgaaggaagtgatgtagaacgtcctaaaaaaggttttgcaagctgtgagctcattctatcaaaggaggaatataatttggctgttaacagaattcaagatgaatctgtgccagcagttttgtacttcgctacctattctgagttcaccagtaccttggtatatgagtttcttcacgaggatttgagtgagcgattcccacatgtagcaatctacgagttcctccttgatcctaaggaagaggactacgaaacaacactgaaaagtctaaatatttcctctattgtcaatgcgccgatattccatttctttaaaaatgggcaaaaggtggatgagctagcctgtgagatatttgaattttatcagtatggcagagacttggaaaagattcttgagaaactatacaacactcaacctgcaataagttcatctggaactgggagaaaaactactcaagaattacaacctgtgaaagataaggatagcaaaggagttagagggcagcgagggaggaaagtgagggatgccgcaatgatttccaaacagacacagagtgggggcaatcatcagcggcggacaacgctgaagagaaaggcggcggcgtcgagaccaatcatggcggtggacgtagttgcgattgtagaggctaaggaaattggagtagaggagactcaggtacctctgctttcgtctgtaggaggcgtcgcggcgggtagtggtcgatggaggaagatctcgacgacgatggccgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

433

Amino Acids

49.24

Weight (kDa)

9.2

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014849)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0492811
rosa_laevigata	RLG00000022744 RLG00000022745 RLG00000022746 RLG00000022748
rosa_multiflora	Rmu_sc0002343.1_g000012
rosa_roxburghii	Rroxscaffold_6G00392030
rosa_rugosa	Rorug03G0257500 Rorug03G0257600 Rorug03G0257600 Rorug03G0257900 Rorug03G0258100
rosa_samantha	Rh3AG306600 Rh3DG346700 Rh3DG347200
rosa_wichuraiana	Rw3G026990 Rw3G027010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	62
Acc36I	ACCTGC	1 cut(s)	970
Acc65I	GGTACC	1 cut(s)	1222
AccB1I	GGYRCC	1 cut(s)	1222
AccII	CGCG	2 cut(s)	158, 1253
AclWI	GGATC	1 cut(s)	770
AcoI	YGGCCR	1 cut(s)	1293
AcsI	RAATTY	4 cut(s)	7, 314, 639, 902
AcuI	CTGAAG	2 cut(s)	570, 1151
AcyI	GRCGYC	3 cut(s)	59, 1148, 1248
AdeI	CACNNNGTG	1 cut(s)	1100
AfaI	GTAC	3 cut(s)	671, 700, 1224
AfiI	CCNNNNNNNGG	1 cut(s)	578
AflII	CTTAAG	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	748
AgsI	TTSAA	6 cut(s)	197, 475, 488, 506, 644, 902
AjnI	CCWGG	1 cut(s)	11
AluBI	AGCT	6 cut(s)	52, 263, 387, 591, 598, 883
AluI	AGCT	6 cut(s)	52, 263, 387, 591, 598, 883
Alw21I	GWGCWC	1 cut(s)	600
Alw26I	GTCTC	3 cut(s)	915, 1147, 1208
AlwI	GGATC	1 cut(s)	770
AoxI	GGCC	2 cut(s)	333, 1293
ApeKI	GCWGC	1 cut(s)	1048
ApoI	RAATTY	4 cut(s)	7, 314, 639, 902
Asp700I	GAANNNNTTC	2 cut(s)	318, 933
Asp718I	GGTACC	1 cut(s)	1222
AspLEI	GCGC	1 cut(s)	841
AsuHPI	GGTGA	4 cut(s)	32, 117, 278, 685
AsuNHI	GCTAGC	1 cut(s)	883
AxyI	CCTNAGG	2 cut(s)	272, 780
BaeI	ACNNNNGTAYC	2 cut(s)	1206, 1239
BanI	GGYRCC	1 cut(s)	1222
BanII	GRGCYC	2 cut(s)	246, 600
BauI	CACGAG	1 cut(s)	722
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	600
BbvCI	CCTCAGC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	1060
BccI	CCATC	5 cut(s)	51, 93, 136, 1263, 1285
BciT130I	CCWGG	1 cut(s)	13
BcoDI	GTCTC	3 cut(s)	915, 1147, 1208
BfaI	CTAG	3 cut(s)	264, 525, 884
BfmI	CTRYAG	1 cut(s)	1239
BfrI	CTTAAG	1 cut(s)	431
BfuAI	ACCTGC	1 cut(s)	970
BglII	AGATCT	1 cut(s)	1278
BisI	GCNGC	7 cut(s)	75, 1049, 1074, 1118, 1143, 1146, 1254
BlsI	GCNGC	7 cut(s)	76, 1050, 1075, 1119, 1144, 1147, 1255
Bme1390I	CCNGG	1 cut(s)	13
BmiI	GGNNCC	1 cut(s)	1224
BmrFI	CCNGG	1 cut(s)	13
BmrI	ACTGGG	1 cut(s)	993
BmsI	GCATC	3 cut(s)	316, 439, 1060
BmtI	GCTAGC	1 cut(s)	887
BmuI	ACTGGG	1 cut(s)	993
BpiI	GAAGAC	1 cut(s)	174
Bpu10I	CCTNAGC	3 cut(s)	330, 453, 1194
BpuEI	CTTGAG	2 cut(s)	959, 984
BsaHI	GRCGYC	3 cut(s)	59, 1148, 1248
BsaI	GGTCTC	1 cut(s)	1147
BsaJI	CCNNGG	2 cut(s)	12, 702
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
Bse1I	ACTGG	2 cut(s)	696, 988
Bse21I	CCTNAGG	2 cut(s)	272, 780
Bse3DI	GCAATG	1 cut(s)	1083
BseBI	CCWGG	1 cut(s)	13
BseDI	CCNNGG	2 cut(s)	12, 702
BseGI	GGATG	4 cut(s)	128, 454, 883, 1075
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseMI	GCAATG	1 cut(s)	1083
BseMII	CTCAG	5 cut(s)	231, 444, 454, 678, 1232
BseNI	ACTGG	2 cut(s)	696, 988
BseRI	GAGGAG	1 cut(s)	1226
BseXI	GCAGC	1 cut(s)	1060
Bsh1236I	CGCG	2 cut(s)	158, 1253
BshFI	GGCC	2 cut(s)	335, 1295
BshNI	GGYRCC	1 cut(s)	1222
BsiHKAI	GWGCWC	1 cut(s)	600
BslI	CCNNNNNNNGG	1 cut(s)	578
BsmAI	GTCTC	3 cut(s)	915, 1147, 1208
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	2 cut(s)	335, 1295
Bso31I	GGTCTC	1 cut(s)	1147
Bsp1286I	GDGCHC	2 cut(s)	246, 600
Bsp143I	GATC	3 cut(s)	199, 775, 1278
Bsp68I	TCGCGA	1 cut(s)	158
BspANI	GGCC	2 cut(s)	335, 1295
BspCNI	CTCAG	5 cut(s)	232, 445, 453, 679, 1231
BspFNI	CGCG	2 cut(s)	158, 1253
BspLI	GGNNCC	1 cut(s)	1224
BspMI	ACCTGC	1 cut(s)	970
BspOI	GCTAGC	1 cut(s)	887
BspPI	GGATC	1 cut(s)	770
BspT107I	GGYRCC	1 cut(s)	1222
BspTI	CTTAAG	1 cut(s)	431
BspTNI	GGTCTC	1 cut(s)	1147
BsrDI	GCAATG	1 cut(s)	1083
BsrI	ACTGG	2 cut(s)	696, 988
BssECI	CCNNGG	2 cut(s)	12, 702
BssMI	GATC	3 cut(s)	199, 775, 1278
BssNI	GRCGYC	3 cut(s)	59, 1148, 1248
BssSI	CACGAG	1 cut(s)	722
BssT1I	CCWWGG	1 cut(s)	702
Bst2BI	CACGAG	1 cut(s)	722
Bst2UI	CCWGG	1 cut(s)	13
Bst6I	CTCTTC	2 cut(s)	780, 1127
BstACI	GRCGYC	3 cut(s)	59, 1148, 1248
BstAFI	CTTAAG	1 cut(s)	431
BstC8I	GCNNGC	4 cut(s)	213, 589, 660, 885
BstDEI	CTNAG	9 cut(s)	240, 272, 330, 440, 453, 687, 780, 1194, 1218
BstENI	CCTNNNNNAGG	1 cut(s)	576
BstF5I	GGATG	4 cut(s)	128, 454, 883, 1075
BstFNI	CGCG	2 cut(s)	158, 1253
BstHHI	GCGC	1 cut(s)	841
BstKTI	GATC	3 cut(s)	202, 778, 1281
BstMAI	GTCTC	3 cut(s)	915, 1147, 1208
BstMBI	GATC	3 cut(s)	199, 775, 1278
BstMWI	GCNNNNNNNGC	1 cut(s)	1126
BstNI	CCWGG	1 cut(s)	13
BstNSI	RCATGY	1 cut(s)	752
BstSCI	CCNGG	1 cut(s)	11
BstSFI	CTRYAG	1 cut(s)	1239
BstUI	CGCG	2 cut(s)	158, 1253
BstV1I	GCAGC	1 cut(s)	1060
BstV2I	GAAGAC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	1278
BstXI	CCANNNNNNTGG	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	1278
Bsu36I	CCTNAGG	2 cut(s)	272, 780
BsuRI	GGCC	2 cut(s)	335, 1295
BtsCI	GGATG	4 cut(s)	128, 454, 883, 1075
BtsIMutI	CAGTG	2 cut(s)	353, 803
BtuMI	TCGCGA	1 cut(s)	158
BveI	ACCTGC	1 cut(s)	970
Cac8I	GCNNGC	4 cut(s)	213, 589, 660, 885
CfoI	GCGC	1 cut(s)	841
CseI	GACGC	3 cut(s)	214, 1137, 1237
Csp6I	GTAC	3 cut(s)	670, 699, 1223
CviAII	CATG	3 cut(s)	280, 749, 1162
CviQI	GTAC	3 cut(s)	670, 699, 1223
DdeI	CTNAG	9 cut(s)	240, 272, 330, 440, 453, 687, 780, 1194, 1218
DpnI	GATC	3 cut(s)	201, 777, 1280
DpnII	GATC	3 cut(s)	199, 775, 1278
DraI	TTTAAA	1 cut(s)	859
DraIII	CACNNNGTG	1 cut(s)	1100
EaeI	YGGCCR	1 cut(s)	1293
Eam1104I	CTCTTC	2 cut(s)	780, 1127
EarI	CTCTTC	2 cut(s)	780, 1127
EciI	GGCGGA	1 cut(s)	1135
Ecl136II	GAGCTC	1 cut(s)	598
Eco130I	CCWWGG	1 cut(s)	702
Eco24I	GRGCYC	2 cut(s)	246, 600
Eco31I	GGTCTC	1 cut(s)	1147
Eco53kI	GAGCTC	1 cut(s)	598
Eco57I	CTGAAG	2 cut(s)	570, 1151
Eco81I	CCTNAGG	2 cut(s)	272, 780
EcoICRI	GAGCTC	1 cut(s)	598
EcoNI	CCTNNNNNAGG	1 cut(s)	576
EcoRI	GAATTC	3 cut(s)	7, 314, 639
EcoRII	CCWGG	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	702
EcoT38I	GRGCYC	2 cut(s)	246, 600
ErhI	CCWWGG	1 cut(s)	702
FaeI	CATG	3 cut(s)	283, 752, 1165
FatI	CATG	3 cut(s)	279, 748, 1161
FauI	CCCGC	1 cut(s)	1249
Fnu4HI	GCNGC	7 cut(s)	75, 1049, 1074, 1118, 1143, 1146, 1254
FokI	GGATG	4 cut(s)	115, 461, 890, 1082
FriOI	GRGCYC	2 cut(s)	246, 600
Fsp4HI	GCNGC	7 cut(s)	75, 1049, 1074, 1118, 1143, 1146, 1254
FspBI	CTAG	3 cut(s)	264, 525, 884
GlaI	GCGC	1 cut(s)	840
GluI	GCNGC	7 cut(s)	75, 1049, 1074, 1118, 1143, 1146, 1254
HaeIII	GGCC	2 cut(s)	335, 1295
HgaI	GACGC	3 cut(s)	214, 1137, 1237
HhaI	GCGC	1 cut(s)	841
Hin1I	GRCGYC	3 cut(s)	59, 1148, 1248
Hin1II	CATG	3 cut(s)	283, 752, 1165
Hin6I	GCGC	1 cut(s)	839
HinP1I	GCGC	1 cut(s)	839
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	2 cut(s)	50, 385
HinfI	GANTC	6 cut(s)	283, 291, 650, 741, 934, 1216
HpaI	GTTAAC	1 cut(s)	634
HphI	GGTGA	4 cut(s)	32, 117, 278, 685
Hpy166II	GTNNAC	3 cut(s)	634, 693, 1171
Hpy188I	TCNGA	4 cut(s)	241, 313, 443, 688
Hpy8I	GTNNAC	3 cut(s)	634, 693, 1171
Hpy99I	CGWCG	5 cut(s)	61, 1153, 1253, 1288, 1291
HpyAV	CCTTC	3 cut(s)	122, 163, 545
HpyCH4IV	ACGT	3 cut(s)	59, 568, 1173
HpyCH4V	TGCA	3 cut(s)	103, 587, 965
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1126
HpyF3I	CTNAG	9 cut(s)	240, 272, 330, 440, 453, 687, 780, 1194, 1218
HpySE526I	ACGT	3 cut(s)	59, 568, 1173
Hsp92I	GRCGYC	3 cut(s)	59, 1148, 1248
Hsp92II	CATG	3 cut(s)	283, 752, 1165
HspAI	GCGC	1 cut(s)	839
KpnI	GGTACC	1 cut(s)	1226
KspAI	GTTAAC	1 cut(s)	634
Kzo9I	GATC	3 cut(s)	199, 775, 1278
Lsp1109I	GCAGC	1 cut(s)	1060
LweI	GCATC	3 cut(s)	316, 439, 1060
MaeI	CTAG	3 cut(s)	264, 525, 884
MaeII	ACGT	3 cut(s)	59, 568, 1173
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	3 cut(s)	201, 777, 1280
MboI	GATC	3 cut(s)	199, 775, 1278
MboII	GAAGA	5 cut(s)	179, 710, 797, 1144, 1288
MflI	RGATCY	1 cut(s)	1278
MhlI	GDGCHC	2 cut(s)	246, 600
MluCI	AATT	9 cut(s)	7, 64, 216, 314, 622, 639, 902, 1004, 1200
MlyI	GAGTC	1 cut(s)	1210
MroXI	GAANNNNTTC	2 cut(s)	318, 933
MseI	TTAA	6 cut(s)	147, 186, 399, 432, 633, 858
MslI	CAYNNNNRTG	1 cut(s)	1166
MspA1I	CMGCKG	1 cut(s)	1117
MspCI	CTTAAG	1 cut(s)	431
MspR9I	CCNGG	1 cut(s)	13
Mva1269I	GAATGC	1 cut(s)	473
MvaI	CCWGG	1 cut(s)	13
MvnI	CGCG	2 cut(s)	158, 1253
MwoI	GCNNNNNNNGC	1 cut(s)	1126
NdeII	GATC	3 cut(s)	199, 775, 1278
NheI	GCTAGC	1 cut(s)	883
NlaIII	CATG	3 cut(s)	283, 752, 1165
NlaIV	GGNNCC	1 cut(s)	1224
NmuCI	GTSAC	1 cut(s)	226
NruI	TCGCGA	1 cut(s)	158
NspI	RCATGY	1 cut(s)	752
PciI	ACATGT	1 cut(s)	748
PctI	GAATGC	1 cut(s)	473
PdmI	GAANNNNTTC	2 cut(s)	318, 933
PfeI	GAWTC	5 cut(s)	283, 291, 650, 741, 934
PkrI	GCNGC	7 cut(s)	76, 1050, 1075, 1119, 1144, 1147, 1255
PleI	GAGTC	1 cut(s)	1210
PpsI	GAGTC	1 cut(s)	1210
PscI	ACATGT	1 cut(s)	748
Psp124BI	GAGCTC	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	1224
PsuI	RGATCY	1 cut(s)	1278
RruI	TCGCGA	1 cut(s)	158
RsaI	GTAC	3 cut(s)	671, 700, 1224
RsaNI	GTAC	3 cut(s)	670, 699, 1223
RseI	CAYNNNNRTG	1 cut(s)	1166
SacI	GAGCTC	1 cut(s)	600
SaqAI	TTAA	6 cut(s)	147, 186, 399, 432, 633, 858
SatI	GCNGC	7 cut(s)	75, 1049, 1074, 1118, 1143, 1146, 1254
Sau3AI	GATC	3 cut(s)	199, 775, 1278
SchI	GAGTC	1 cut(s)	1210
ScrFI	CCNGG	1 cut(s)	13
SduI	GDGCHC	2 cut(s)	246, 600
SfaNI	GCATC	3 cut(s)	316, 439, 1060
SfcI	CTRYAG	1 cut(s)	1239
SmiMI	CAYNNNNRTG	1 cut(s)	1166
SmlI	CTYRAG	3 cut(s)	431, 938, 999
SmoI	CTYRAG	3 cut(s)	431, 938, 999
Sse9I	AATT	9 cut(s)	7, 64, 216, 314, 622, 639, 902, 1004, 1200
SspI	AATATT	1 cut(s)	820
SspMI	CTAG	3 cut(s)	264, 525, 884
SstI	GAGCTC	1 cut(s)	600
StyD4I	CCNGG	1 cut(s)	11
StyI	CCWWGG	1 cut(s)	702
TaiI	ACGT	3 cut(s)	62, 571, 1176
TaqI	TCGA	5 cut(s)	56, 465, 1151, 1267, 1283
TasI	AATT	9 cut(s)	7, 64, 216, 314, 622, 639, 902, 1004, 1200
TatI	WGTACW	1 cut(s)	669
TauI	GCSGC	6 cut(s)	77, 1076, 1120, 1145, 1148, 1256
TfiI	GAWTC	5 cut(s)	283, 291, 650, 741, 934
Tru1I	TTAA	6 cut(s)	147, 186, 399, 432, 633, 858
Tru9I	TTAA	6 cut(s)	147, 186, 399, 432, 633, 858
TscAI	CASTG	2 cut(s)	360, 810
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	1 cut(s)	1048
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	6 cut(s)	20, 26, 296, 510, 663, 963
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	2 cut(s)	360, 810
Vha464I	CTTAAG	1 cut(s)	431
XagI	CCTNNNNNAGG	1 cut(s)	576
XapI	RAATTY	4 cut(s)	7, 314, 639, 902
XceI	RCATGY	1 cut(s)	752
XmnI	GAANNNNTTC	2 cut(s)	318, 933
XspI	CTAG	3 cut(s)	264, 525, 884
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.