Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002160

Physical Location & Seq

Genomic Coordinates Forward (+)

24567558 .. 24577796

Gene Structure 10239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0257900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3093 bp

ATGAGCGCGGTTTCGGGTGTAGTGTCTCGCCAAGTTTTGCCTGCTTGCGGCAGTCTCTGTTTCTTTTGCCCCGGGCTGCGTGCCAGGTCGCGCCAGCCCGTCAAGAGGTACAAGAAGCTCATTGCTGATATTTTCCCCAAAAACCAGGAAGAAGGACCAAATGATCGGAAGATAGGAAAATTGTGTGAATATGCTGCTAAAAATCCTTTGCGGATTCCAAAGATCACAACCTCTCTTGAGCAAAGGTGTTACAAAGAATTGAGAAATGAGAATTTTCAATCCACAAAAATTGTCATGTGCATTTACAAGAAATTGCTGATAACTTGCAAGGAGCAAATGCCTCTCTTTGCGAGTAGCTTGCTCAGCATTATGCATACCCTTCTGGATCAATCACGCCAAGATGAAATGCAAATTATAGGATGCCAGACTCTTTTTGACTTTGTAAATAATCAGGTGGATGGAACATACATGTTTAACTTAGAAGGATTTATTCCGAAACTCTGTCAGATAGCTCAAGAGCCGGGGGAAGATGAAAGGGCAAATAATTTACGTTGTGCTGCACTGCAAGCCCTTTCTTCAATGGTTTGGTTTATGGGCGAGAATTCTCACATATCAGTCGAGTTCGATAATATTGTCGCAGTGGTCTTGGAAAACTATGGAGGTTTTAAGGAAGCTGAAGGTTCGCAGATTCAGTGGGTGCAGGAAGTTCAAAAAGATGAGGGTCATGTTTCTCCACAAGATGTCAGAATCAGGATTCCTCCTTGGAGTGCCATTGTGGATGCCAAAGGCGAACTAAAAGTATCAGAGGAAGATGCCAAGAACCTCTGTTTTTGGTCCAGGGTTTGCCTTCATAACATGGCAAAGTTAGCCAAAGAGGCTACAACAATAAGACGTGTCCTGGAATCTTTGTTCCGCTACTTTGATAACGAAAACTTGTGGTCTCTTGAACATGGGCTTGCCATCTCAGTCTTAAAGGATGTACAATTCTTAATGGATAATTCTGGGCAAAATACCCATGTTTTGCTATCCATCTTAATCAAGCATCTCGACCACAAAAATGTCCTTAAACAACCCAACATGCAGCTTGACATAGTGGAGGTAACTACCTCCCTCGCTCTACATGCCAAGGTTGAACCCTCTGTAGCAATAATTGGGGCTTTAAGTGATGCCTTGAGGCATTTGAGAAAGAGCATCCACTGCTCTCTGGATGATGCCAATCTCGGGACAGATGTCATCAAATGGAACAAATGCTTTAGAGAAGAGGTGGATAAGTGCCTTGTACAGCTATCATATAAGATCGGAGAACCAGGACCAATTCTTGATGCTATGGCTGTTATGCTGGAGAATATTTCAACTATTACTGTGATAGCCAGAACTACAATTGCTGCTATTTATCGTACTGCTCAAATTGTAGCTTCCTTACCAAATTTGTCCTATCAAAACAAGGCTTTCCCAGAGGCATTGTTTCACCAATTACTCCCAGCTATGGTTCATCCAGACCATGAAACACGTGTTGGAGCTCATCGCATCTTCTCTGTTGTTCTTGTGCCATCTTCAGTTTCGCCTAATCTATTCTCATCTAATACCGAGACAAAAAAGGCCTTTGATCTTCACAGGACACTCTCAAGAACTGTCTCTGTGTTTTCTTCTTCAGCTGCCCTTTTTGAGAAGCTGAGGAGAGAGAAAATTTCCTCACGGGAAAGTATTTGTGAAGAAGATGAAAACATTGTTCCGGAGGGGGAAGAAAGAGACACCAATAATGGGTTTCTGAGCAGATTGAAGTCATCTTATAGTCGGACATATAGTATGAAAAGCTTGCCTGCACCTTCAACACCAAATGAAAATTCCATGAGCAATACTAAGGAACTTGAGGCTAATTCCCTCAGGTTGAGCAGCCACCAGATAACTCTCTTGCTTTTATCAATTTCGGCACAATCCATCTCTCCTGGGAACATGCCTGAAAACTATGAAGCAATTGCTCATACCTACAGCCTTGTATTACTCTTCTCTCGGGCCAAGAATTCCTGCATTGAGGTTCTTGTTCGAAGTTTTCAGCTGGCATTTTCCTTACGAAATATCTCTCTTATTGAAGGAGGGCCATTGCCACCATCGCGTCGCAGGTCCCTGTTTACCCTGGCAACTTCAATGATTCTATTTTTATCAAAAGCATACAATTTTTTCTCTCTGGTTGATAGAGTCAAGGCAGCACTGACGGATAAAAAGGTTGATCCGTTCCTACATTTGGTTGAAGAGTACAAGTTACAGGCTGTTAAGGCTGGACCTGACCATCCCACATATCTCTATGGATCCAAGGAAGATGACAATTTGGCATTAAAATCTCTGTCACAAATAGTGATTACTGAAGAGCAGAGTAGGGAATCATTTGCTTCTGCAATTGTGAAGAGCTTGGACAATTTGTCAGAATCTGAATTGTCTTCTATAAAGGAGGAGTTGCTCAATGATTTCGTACCTGATGATATCTGTCCACTAGGAGCACAATTGTTCACGGAAGCTCCGAAAAAACTTTATCAGGTTGATTTCACAAATAGTGAATCTATTAAGGAGGATGCTCCATTATTTTCAATGGAAGATGATTCTGTTCCAGGCTCATCTAATAGCCACCAGAACAGTGTAGAGTTGTCTATGGATCTTCCCATTCTTTTGAATGTTAATCAACTAATGGAATCGGTCCAGGAGACAGCAAATCAAGTTGGAAGGTTTTCAGTCTCAACTAAACCTGATGTATCTTACAAGGAAATGGCCGGCCACTGTGAGGCACTTCTGCTAGGAAAGCAGCAGAAGATGTCCAAGTTCATGAGTTCTCAAAAGAAAGAGGAATGTTTGATGAACTTCTCTTTACAAAATCATAATGACTACCTGCAAGAGACAACGCCCGATTCTTATATCGGCATTGGTTCCCATAGGAGCGGTAATGCTTTTGCTGACCACACTGCCACTTCATACAAACTACCGCCAACCCCAGGCCATGTCCCAATGCTTTGTGCAGCGGAATACCAGCATAATCCCCACTCCTCCTTCAGACTACCAGCCTCAAATCCATATGATAACTTCCTAAAAGCTGCCGGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031974 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

1030

Amino Acids

115.28

Weight (kDa)

6.1

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EFR3_ARM	PF21052	69 - 158	2.5e-17	EFR3, armadillo repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0148221 RchiOBHm_Chr2g0148231 RchiOBHm_Chr3g0492741 RchiOBHm_Chr3g0492821 RchiOBHm_Chr3g0492851 RchiOBHm_Chr3g0492941 RchiOBHm_MTg0498311
rosa_laevigata	RLG00000000352 RLG00000000381 RLG00000000382 RLG00000000397 RLG00000000398 RLG00000020328 RLG00000022742 RLG00000022743 RLG00000022747 RLG00000022749
rosa_multiflora	Rmu_co8117328.1_g000001 Rmu_sc0000927.1_g000019 Rmu_sc0002583.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098980 Rroxscaffold_6G00392020 Rroxscaffold_6G00392080
rosa_rugosa	Rorug02G0404600 Rorug02G0404700 Rorug03G0256700 Rorug03G0256800 Rorug03G0257700 Rorug03G0257900 Rorug03G0258200
rosa_samantha	Rh2AG463200 Rh2BG476400 Rh2CG450000 Rh2DG485100 Rh3AG306300 Rh3AG306700 Rh3AG306900 Rh3AG307200 Rh3DG346800 Rh3DG347000 Rh3DG347300
rosa_wichuraiana	Rw2G037770 Rw3G026950 Rw3G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	2109, 2886
AccBSI	CCGCTC	1 cut(s)	2928
AccII	CGCG	3 cut(s)	8, 91, 2113
AccIII	TCCGGA	1 cut(s)	1732
AciI	CCGC	7 cut(s)	8, 48, 211, 913, 2928, 2972, 3008
AclWI	GGATC	5 cut(s)	393, 2222, 2301, 2314, 2655
AcoI	YGGCCR	2 cut(s)	2760, 2764
AcsI	RAATTY	6 cut(s)	271, 601, 1426, 1686, 1843, 2020
AcuI	CTGAAG	5 cut(s)	696, 1539, 1635, 2382, 3022
AcvI	CACGTG	1 cut(s)	1511
AfaI	GTAC	6 cut(s)	110, 981, 1281, 1399, 2255, 2469
AfiI	CCNNNNNNNGG	8 cut(s)	47, 105, 1221, 1486, 1761, 2242, 2773, 2981
AflIII	ACRYGT	4 cut(s)	468, 892, 1508, 1510
AhdI	GACNNNNNGTC	1 cut(s)	2416
AjiI	CACGTC	1 cut(s)	893
AjuI	GAANNNNNNNTTGG	4 cut(s)	1497, 1529, 1828, 1860
AloI	GAACNNNNNNTCC	2 cut(s)	893, 925
Alw21I	GWGCWC	2 cut(s)	1522, 2497
Alw26I	GTCTC	9 cut(s)	30, 59, 945, 1583, 1639, 1743, 2690, 2731, 2879
AlwI	GGATC	5 cut(s)	393, 2222, 2301, 2314, 2655
AlwNI	CAGNNNCTG	2 cut(s)	57, 2426
Ama87I	CYCGRG	3 cut(s)	71, 1220, 2010
Aor13HI	TCCGGA	1 cut(s)	1732
AoxI	GGCC	6 cut(s)	1599, 2013, 2096, 2760, 2764, 2983
ApoI	RAATTY	6 cut(s)	271, 601, 1426, 1686, 1843, 2020
Asp700I	GAANNNNTTC	1 cut(s)	2719
AspLEI	GCGC	2 cut(s)	8, 93
AspS9I	GGNCC	8 cut(s)	155, 834, 1310, 2013, 2096, 2121, 2279, 2689
AsuC2I	CCSGG	3 cut(s)	72, 73, 522
AsuHPI	GGTGA	1 cut(s)	1460
AsuII	TTCGAA	1 cut(s)	2044
AvaI	CYCGRG	3 cut(s)	71, 1220, 2010
AvaII	GGWCC	6 cut(s)	155, 834, 1310, 2121, 2279, 2689
AxyI	CCTNAGG	1 cut(s)	1883
BamHI	GGATCC	1 cut(s)	2306
BanII	GRGCYC	1 cut(s)	1522
BbrPI	CACGTG	1 cut(s)	1511
BbsI	GAAGAC	1 cut(s)	2427
Bbv12I	GWGCWC	2 cut(s)	1522, 2497
BbvCI	CCTCAGC	1 cut(s)	1673
BccI	CCATC	7 cut(s)	452, 968, 1037, 1558, 1946, 2116, 2295
BcgI	CGANNNNNNTGC	2 cut(s)	340, 374
BcnI	CCSGG	3 cut(s)	72, 73, 522
BcoDI	GTCTC	9 cut(s)	30, 59, 945, 1583, 1639, 1743, 2690, 2731, 2879
BfaI	CTAG	2 cut(s)	2489, 2786
BfmI	CTRYAG	2 cut(s)	1140, 1987
BfuAI	ACCTGC	2 cut(s)	2109, 2886
BglI	GCCNNNNNGGC	1 cut(s)	875
BlpI	GCTNAGC	1 cut(s)	362
Bme18I	GGWCC	6 cut(s)	155, 834, 1310, 2121, 2279, 2689
BmeRI	GACNNNNNGTC	1 cut(s)	2416
BmeT110I	CYCGRG	3 cut(s)	71, 1220, 2010
BmgBI	CACGTC	1 cut(s)	893
BmgT120I	GGNCC	8 cut(s)	155, 834, 1310, 2013, 2096, 2121, 2279, 2689
BmiI	GGNNCC	3 cut(s)	2123, 2308, 2917
BoxI	GACNNNNGTC	1 cut(s)	1229
BpiI	GAAGAC	1 cut(s)	2427
BpmI	CTGGAG	1 cut(s)	1361
Bpu10I	CCTNAGC	1 cut(s)	1673
Bpu1102I	GCTNAGC	1 cut(s)	362
Bpu14I	TTCGAA	1 cut(s)	2044
BpuEI	CTTGAG	5 cut(s)	257, 498, 1192, 1609, 1889
BpuMI	CCSGG	3 cut(s)	72, 73, 522
BsaAI	YACGTR	1 cut(s)	1511
BsaBI	GATNNNNATC	1 cut(s)	1215
BsaI	GGTCTC	1 cut(s)	945
BsaWI	WCCGGW	1 cut(s)	1732
BsaXI	ACNNNNNCTCC	2 cut(s)	2497, 2527
Bsc4I	CCNNNNNNNGG	8 cut(s)	47, 105, 1221, 1486, 1761, 2242, 2773, 2981
Bse118I	RCCGGY	2 cut(s)	2762, 3083
Bse21I	CCTNAGG	1 cut(s)	1883
Bse3DI	GCAATG	2 cut(s)	120, 2099
Bse8I	GATNNNNATC	1 cut(s)	1215
BseAI	TCCGGA	1 cut(s)	1732
BseGI	GGATG	9 cut(s)	425, 463, 784, 982, 1191, 1213, 1492, 2287, 2572
BseJI	GATNNNNATC	1 cut(s)	1215
BseLI	CCNNNNNNNGG	8 cut(s)	47, 105, 1221, 1486, 1761, 2242, 2773, 2981
BseMI	GCAATG	2 cut(s)	120, 2099
BseMII	CTCAG	5 cut(s)	376, 978, 1664, 1760, 1897
BseRI	GAGGAG	3 cut(s)	1690, 2462, 3022
BseYI	CCCAGC	1 cut(s)	1480
BsgI	GTGCAG	4 cut(s)	543, 719, 1806, 3024
Bsh1236I	CGCG	3 cut(s)	8, 91, 2113
BshFI	GGCC	6 cut(s)	1601, 2015, 2098, 2762, 2766, 2985
BsiHKAI	GWGCWC	2 cut(s)	1522, 2497
BsiHKCI	CYCGRG	3 cut(s)	71, 1220, 2010
BsiSI	CCGG	5 cut(s)	72, 521, 1733, 2763, 3084
BslFI	GGGAC	3 cut(s)	1237, 2107, 2975
BslI	CCNNNNNNNGG	8 cut(s)	47, 105, 1221, 1486, 1761, 2242, 2773, 2981
BsmAI	GTCTC	9 cut(s)	30, 59, 945, 1583, 1639, 1743, 2690, 2731, 2879
BsmFI	GGGAC	3 cut(s)	1237, 2107, 2975
BsnI	GGCC	6 cut(s)	1601, 2015, 2098, 2762, 2766, 2985
Bso31I	GGTCTC	1 cut(s)	945
BsoBI	CYCGRG	3 cut(s)	71, 1220, 2010
Bsp119I	TTCGAA	1 cut(s)	2044
Bsp1286I	GDGCHC	2 cut(s)	1522, 2497
Bsp13I	TCCGGA	1 cut(s)	1732
Bsp1407I	TGTACA	2 cut(s)	979, 1279
Bsp143I	GATC	8 cut(s)	163, 222, 385, 1296, 1606, 2227, 2306, 2647
Bsp1720I	GCTNAGC	1 cut(s)	362
BspACI	CCGC	7 cut(s)	8, 48, 211, 913, 2928, 2972, 3008
BspANI	GGCC	6 cut(s)	1601, 2015, 2098, 2762, 2766, 2985
BspCNI	CTCAG	5 cut(s)	375, 977, 1665, 1761, 1896
BspEI	TCCGGA	1 cut(s)	1732
BspFNI	CGCG	3 cut(s)	8, 91, 2113
BspHI	TCATGA	1 cut(s)	2814
BspLI	GGNNCC	3 cut(s)	2123, 2308, 2917
BspMI	ACCTGC	2 cut(s)	2109, 2886
BspPI	GGATC	5 cut(s)	393, 2222, 2301, 2314, 2655
BspQI	GCTCTTC	2 cut(s)	2358, 2396
BspT104I	TTCGAA	1 cut(s)	2044
BspTNI	GGTCTC	1 cut(s)	945
BsrBI	CCGCTC	1 cut(s)	2928
BsrDI	GCAATG	2 cut(s)	120, 2099
BsrFI	RCCGGY	2 cut(s)	2762, 3083
BsrGI	TGTACA	2 cut(s)	979, 1279
BssAI	RCCGGY	2 cut(s)	2762, 3083
BssMI	GATC	8 cut(s)	163, 222, 385, 1296, 1606, 2227, 2306, 2647
BssT1I	CCWWGG	3 cut(s)	761, 1125, 2310
Bst4CI	ACNGT	4 cut(s)	1363, 1633, 2630, 2771
Bst6I	CTCTTC	5 cut(s)	1254, 2009, 2244, 2358, 2396
BstAPI	GCANNNNNTGC	1 cut(s)	1197
BstAUI	TGTACA	2 cut(s)	979, 1279
BstBAI	YACGTR	1 cut(s)	1511
BstBI	TTCGAA	1 cut(s)	2044
BstDEI	CTNAG	7 cut(s)	362, 478, 964, 1673, 1769, 1860, 1883
BstF5I	GGATG	9 cut(s)	425, 463, 784, 982, 1191, 1213, 1492, 2287, 2572
BstFNI	CGCG	3 cut(s)	8, 91, 2113
BstHHI	GCGC	2 cut(s)	8, 93
BstKTI	GATC	8 cut(s)	166, 225, 388, 1299, 1609, 2230, 2309, 2650
BstMAI	GTCTC	9 cut(s)	30, 59, 945, 1583, 1639, 1743, 2690, 2731, 2879
BstMBI	GATC	8 cut(s)	163, 222, 385, 1296, 1606, 2227, 2306, 2647
BstMWI	GCNNNNNNNGC	9 cut(s)	363, 566, 866, 875, 1121, 1197, 2110, 2273, 2791
BstNSI	RCATGY	4 cut(s)	472, 1081, 1124, 1957
BstPAI	GACNNNNGTC	1 cut(s)	1229
BstSFI	CTRYAG	2 cut(s)	1140, 1987
BstUI	CGCG	3 cut(s)	8, 91, 2113
BstV2I	GAAGAC	1 cut(s)	2427
BstX2I	RGATCY	2 cut(s)	2306, 2647
BstYI	RGATCY	2 cut(s)	2306, 2647
Bsu36I	CCTNAGG	1 cut(s)	1883
BsuRI	GGCC	6 cut(s)	1601, 2015, 2098, 2762, 2766, 2985
BtgZI	GCGATG	2 cut(s)	1508, 2094
BtrI	CACGTC	1 cut(s)	893
BtsCI	GGATG	9 cut(s)	425, 463, 784, 982, 1191, 1213, 1492, 2287, 2572
BtsI	GCAGTG	4 cut(s)	560, 645, 1195, 2949
BtsIMutI	CAGTG	8 cut(s)	560, 645, 698, 1195, 2207, 2635, 2767, 2949
BveI	ACCTGC	2 cut(s)	2109, 2886
CaiI	CAGNNNCTG	2 cut(s)	57, 2426
CciI	TCATGA	1 cut(s)	2814
CfoI	GCGC	2 cut(s)	8, 93
Cfr10I	RCCGGY	2 cut(s)	2762, 3083
Cfr13I	GGNCC	8 cut(s)	155, 834, 1310, 2013, 2096, 2121, 2279, 2689
Cfr9I	CCCGGG	1 cut(s)	71
CseI	GACGC	1 cut(s)	2102
Csp6I	GTAC	6 cut(s)	109, 980, 1280, 1398, 2254, 2468
CspCI	CAANNNNNGTGG	2 cut(s)	271, 306
CviQI	GTAC	6 cut(s)	109, 980, 1280, 1398, 2254, 2468
DdeI	CTNAG	7 cut(s)	362, 478, 964, 1673, 1769, 1860, 1883
DpnI	GATC	8 cut(s)	165, 224, 387, 1298, 1608, 2229, 2308, 2649
DpnII	GATC	8 cut(s)	163, 222, 385, 1296, 1606, 2227, 2306, 2647
DriI	GACNNNNNGTC	1 cut(s)	2416
EaeI	YGGCCR	2 cut(s)	2760, 2764
Eam1104I	CTCTTC	5 cut(s)	1254, 2009, 2244, 2358, 2396
Eam1105I	GACNNNNNGTC	1 cut(s)	2416
EarI	CTCTTC	5 cut(s)	1254, 2009, 2244, 2358, 2396
Ecl136II	GAGCTC	1 cut(s)	1520
Eco130I	CCWWGG	3 cut(s)	761, 1125, 2310
Eco147I	AGGCCT	1 cut(s)	1601
Eco24I	GRGCYC	1 cut(s)	1522
Eco31I	GGTCTC	1 cut(s)	945
Eco32I	GATATC	1 cut(s)	2479
Eco47I	GGWCC	6 cut(s)	155, 834, 1310, 2121, 2279, 2689
Eco53kI	GAGCTC	1 cut(s)	1520
Eco57I	CTGAAG	5 cut(s)	696, 1539, 1635, 2382, 3022
Eco72I	CACGTG	1 cut(s)	1511
Eco81I	CCTNAGG	1 cut(s)	1883
Eco88I	CYCGRG	3 cut(s)	71, 1220, 2010
EcoICRI	GAGCTC	1 cut(s)	1520
EcoO109I	RGGNCCY	1 cut(s)	2121
EcoRI	GAATTC	2 cut(s)	601, 2020
EcoRV	GATATC	1 cut(s)	2479
EcoT14I	CCWWGG	3 cut(s)	761, 1125, 2310
EcoT22I	ATGCAT	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	1522
ErhI	CCWWGG	3 cut(s)	761, 1125, 2310
FaqI	GGGAC	3 cut(s)	1237, 2107, 2975
FauNDI	CATATG	1 cut(s)	3061
FokI	GGATG	9 cut(s)	432, 470, 791, 989, 1178, 1220, 1479, 2274, 2579
FriOI	GRGCYC	1 cut(s)	1522
FseI	GGCCGGCC	1 cut(s)	2766
FspBI	CTAG	2 cut(s)	2489, 2786
GlaI	GCGC	2 cut(s)	7, 92
GsaI	CCCAGC	1 cut(s)	1484
GsuI	CTGGAG	1 cut(s)	1361
HaeIII	GGCC	6 cut(s)	1601, 2015, 2098, 2762, 2766, 2985
HapII	CCGG	5 cut(s)	72, 521, 1733, 2763, 3084
HgaI	GACGC	1 cut(s)	2102
HhaI	GCGC	2 cut(s)	8, 93
Hin6I	GCGC	2 cut(s)	6, 91
HinP1I	GCGC	2 cut(s)	6, 91
HindIII	AAGCTT	1 cut(s)	1813
HpaII	CCGG	5 cut(s)	72, 521, 1733, 2763, 3084
HphI	GGTGA	1 cut(s)	1460
Hpy166II	GTNNAC	3 cut(s)	2130, 2486, 2505
Hpy8I	GTNNAC	3 cut(s)	2130, 2486, 2505
Hpy99I	CGWCG	1 cut(s)	2118
HpyAV	CCTTC	9 cut(s)	146, 389, 476, 671, 857, 1836, 2084, 2709, 3046
HpyCH4III	ACNGT	4 cut(s)	1363, 1633, 2630, 2771
HpyCH4IV	ACGT	3 cut(s)	550, 892, 1510
HpyF10VI	GCNNNNNNNGC	9 cut(s)	363, 566, 866, 875, 1121, 1197, 2110, 2273, 2791
HpyF3I	CTNAG	7 cut(s)	362, 478, 964, 1673, 1769, 1860, 1883
HpySE526I	ACGT	3 cut(s)	550, 892, 1510
HspAI	GCGC	2 cut(s)	6, 91
Kpn2I	TCCGGA	1 cut(s)	1732
KroI	GCCGGC	1 cut(s)	2762
KroNI	GCCGGC	1 cut(s)	2764
Kzo9I	GATC	8 cut(s)	163, 222, 385, 1296, 1606, 2227, 2306, 2647
LguI	GCTCTTC	2 cut(s)	2358, 2396
LmnI	GCTCC	6 cut(s)	331, 1517, 2492, 2518, 2575, 2925
MaeI	CTAG	2 cut(s)	2489, 2786
MaeII	ACGT	3 cut(s)	550, 892, 1510
MaeIII	GTNAC	4 cut(s)	248, 1099, 2259, 2343
MalI	GATC	8 cut(s)	165, 224, 387, 1298, 1608, 2229, 2308, 2649
MbiI	CCGCTC	1 cut(s)	2928
MboI	GATC	8 cut(s)	163, 222, 385, 1296, 1606, 2227, 2306, 2647
MfeI	CAATTG	4 cut(s)	1380, 1974, 2394, 2498
MflI	RGATCY	2 cut(s)	2306, 2647
MhlI	GDGCHC	2 cut(s)	1522, 2497
MlyI	GAGTC	2 cut(s)	421, 2205
MmeI	TCCRAC	3 cut(s)	1495, 1775, 2692
Mph1103I	ATGCAT	1 cut(s)	375
MroI	TCCGGA	1 cut(s)	1732
MroNI	GCCGGC	1 cut(s)	2762
MroXI	GAANNNNTTC	1 cut(s)	2719
MslI	CAYNNNNRTG	1 cut(s)	1056
MspA1I	CMGCKG	3 cut(s)	1655, 2056, 3008
MspI	CCGG	5 cut(s)	72, 521, 1733, 2763, 3084
MunI	CAATTG	4 cut(s)	1380, 1974, 2394, 2498
MvnI	CGCG	3 cut(s)	8, 91, 2113
MwoI	GCNNNNNNNGC	9 cut(s)	363, 566, 866, 875, 1121, 1197, 2110, 2273, 2791
NaeI	GCCGGC	1 cut(s)	2764
NciI	CCSGG	3 cut(s)	72, 73, 522
NdeI	CATATG	1 cut(s)	3061
NdeII	GATC	8 cut(s)	163, 222, 385, 1296, 1606, 2227, 2306, 2647
NgoMIV	GCCGGC	1 cut(s)	2762
NlaIV	GGNNCC	3 cut(s)	2123, 2308, 2917
NmuCI	GTSAC	1 cut(s)	2343
NsiI	ATGCAT	1 cut(s)	375
NspI	RCATGY	4 cut(s)	472, 1081, 1124, 1957
NspV	TTCGAA	1 cut(s)	2044
PagI	TCATGA	1 cut(s)	2814
PceI	AGGCCT	1 cut(s)	1601
PciI	ACATGT	1 cut(s)	468
PciSI	GCTCTTC	2 cut(s)	2358, 2396
PcsI	WCGNNNNNNNCGW	1 cut(s)	2513
PdiI	GCCGGC	1 cut(s)	2764
PdmI	GAANNNNTTC	1 cut(s)	2719
PfoI	TCCNGGA	2 cut(s)	897, 2691
PleI	GAGTC	2 cut(s)	421, 2204
PmaCI	CACGTG	1 cut(s)	1511
PmlI	CACGTG	1 cut(s)	1511
PpsI	GAGTC	2 cut(s)	421, 2204
Ppu21I	YACGTR	1 cut(s)	1511
PpuMI	RGGWCCY	1 cut(s)	2121
PscI	ACATGT	1 cut(s)	468
PshAI	GACNNNNGTC	1 cut(s)	1229
Psp124BI	GAGCTC	1 cut(s)	1522
Psp5II	RGGWCCY	1 cut(s)	2121
PspCI	CACGTG	1 cut(s)	1511
PspFI	CCCAGC	1 cut(s)	1480
PspN4I	GGNNCC	3 cut(s)	2123, 2308, 2917
PspPI	GGNCC	8 cut(s)	155, 834, 1310, 2013, 2096, 2121, 2279, 2689
PspPPI	RGGWCCY	1 cut(s)	2121
PstNI	CAGNNNCTG	2 cut(s)	57, 2426
PsuI	RGATCY	2 cut(s)	2306, 2647
PvuII	CAGCTG	2 cut(s)	1655, 2056
RigI	GGCCGGCC	1 cut(s)	2766
RsaI	GTAC	6 cut(s)	110, 981, 1281, 1399, 2255, 2469
RsaNI	GTAC	6 cut(s)	109, 980, 1280, 1398, 2254, 2468
RseI	CAYNNNNRTG	1 cut(s)	1056
SacI	GAGCTC	1 cut(s)	1522
SapI	GCTCTTC	2 cut(s)	2358, 2396
Sau3AI	GATC	8 cut(s)	163, 222, 385, 1296, 1606, 2227, 2306, 2647
Sau96I	GGNCC	8 cut(s)	155, 834, 1310, 2013, 2096, 2121, 2279, 2689
SchI	GAGTC	2 cut(s)	421, 2205
SduI	GDGCHC	2 cut(s)	1522, 2497
SfcI	CTRYAG	2 cut(s)	1140, 1987
SfuI	TTCGAA	1 cut(s)	2044
SinI	GGWCC	6 cut(s)	155, 834, 1310, 2121, 2279, 2689
SmaI	CCCGGG	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	1056
SmlI	CTYRAG	5 cut(s)	236, 513, 1171, 1624, 1868
SmoI	CTYRAG	5 cut(s)	236, 513, 1171, 1624, 1868
SseBI	AGGCCT	1 cut(s)	1601
SsiI	CCGC	7 cut(s)	8, 48, 211, 913, 2928, 2972, 3008
SspI	AATATT	2 cut(s)	631, 1348
SspMI	CTAG	2 cut(s)	2489, 2786
SstI	GAGCTC	1 cut(s)	1522
StuI	AGGCCT	1 cut(s)	1601
StyI	CCWWGG	3 cut(s)	761, 1125, 2310
TaaI	ACNGT	4 cut(s)	1363, 1633, 2630, 2771
TaiI	ACGT	3 cut(s)	553, 895, 1513
TaqI	TCGA	4 cut(s)	618, 624, 1047, 2044
TaqII	GACCGA	1 cut(s)	2677
TatI	WGTACW	3 cut(s)	979, 1279, 2253
TauI	GCSGC	1 cut(s)	51
TscAI	CASTG	8 cut(s)	567, 645, 698, 1202, 2214, 2635, 2774, 2956
TseFI	GTSAC	1 cut(s)	2343
Tsp45I	GTSAC	1 cut(s)	2343
TspGWI	ACGGA	3 cut(s)	2220, 2228, 2522
TspMI	CCCGGG	1 cut(s)	71
TspRI	CASTG	8 cut(s)	567, 645, 698, 1202, 2214, 2635, 2774, 2956
VpaK11BI	GGWCC	6 cut(s)	155, 834, 1310, 2121, 2279, 2689
XapI	RAATTY	6 cut(s)	271, 601, 1426, 1686, 1843, 2020
XceI	RCATGY	4 cut(s)	472, 1081, 1124, 1957
XmaI	CCCGGG	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	2719
XspI	CTAG	2 cut(s)	2489, 2786
Zsp2I	ATGCAT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.