RCHIOBHM_MTG0498311

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
Mt
OG0002160
Physical Location & Seq
Forward (+)
56181 .. 57285
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15604

Sequence Viewer

Length: 447 bp
ATGATGAGCATCTATATGAGTCGATCATTTCCAAGATCTAATTCCAGTTTTAAGTTATCTAGTGGAAATGCCTTAGAATCTGAAGTTGTACGCTTAAGGGAAGATAAGTTCTTGGTGGATGCAGGACCTGGGACCCCCAGAATTTGTATGCAAGATGAGCCTACAGGAGTGCCAATCAACCGAGCCGCCAGGTTTGAGAATAAGGTGGGATACATTTCCAAGGGGGTAGTGGCCGGTGAATCAGTGATCAAAGAGCAGATTTTGGAGAGATTCTTCATCGATGTAGTGGCTGGTGAATCAAAGATCAAAGAGCGAGCAGCCGCCAGGTTTCATTCTTTGGTGGGATCCACAGATGTAGTGGCTGGTGAACCGCTTCTTCTTCTTCCACGAAGATTCAGACAAAGGCGAGCTTGGATGGAACTGAACAAGATTTGGCGAAGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.81

Weight (kDa)

10.31

Isoelectric Point (pI)

56.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 186, 321, 371
AclWI GGATC 2 cut(s) 339, 352
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 1 cut(s) 141
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 1 cut(s) 90
AflII CTTAAG 1 cut(s) 94
AjnI CCWGG 3 cut(s) 127, 188, 323
AjuI GAANNNNNNNTTGG 2 cut(s) 25, 57
AloI GAACNNNNNNTCC 2 cut(s) 92, 124
AluBI AGCT 1 cut(s) 410
AluI AGCT 1 cut(s) 410
AlwI GGATC 2 cut(s) 339, 352
AlwNI CAGNNNCTG 1 cut(s) 128
AoxI GGCC 1 cut(s) 231
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 372
AspS9I GGNCC 2 cut(s) 125, 132
AsuHPI GGTGA 3 cut(s) 248, 305, 377
AvaII GGWCC 2 cut(s) 125, 132
BamHI GGATCC 1 cut(s) 344
BbvI GCAGC 1 cut(s) 329
BccI CCATC 1 cut(s) 409
BciT130I CCWGG 3 cut(s) 129, 190, 325
BciVI GTATCC 1 cut(s) 203
BclI TGATCA 1 cut(s) 246
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 162
BfrI CTTAAG 1 cut(s) 94
BfuI GTATCC 1 cut(s) 203
BglII AGATCT 1 cut(s) 35
BisI GCNGC 3 cut(s) 186, 318, 321
BlsI GCNGC 3 cut(s) 187, 319, 322
Bme1390I CCNGG 3 cut(s) 129, 190, 325
Bme18I GGWCC 2 cut(s) 125, 132
BmgT120I GGNCC 2 cut(s) 125, 132
BmiI GGNNCC 3 cut(s) 133, 134, 346
BmrFI CCNGG 3 cut(s) 129, 190, 325
BmsI GCATC 2 cut(s) 18, 109
Bsa29I ATCGAT 1 cut(s) 279
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 128, 219
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 3 cut(s) 129, 190, 325
BseCI ATCGAT 1 cut(s) 279
BseDI CCNNGG 2 cut(s) 128, 219
BseGI GGATG 2 cut(s) 124, 420
BseJI GATNNNNATC 1 cut(s) 8
BseNI ACTGG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 329
BshFI GGCC 1 cut(s) 233
BshVI ATCGAT 1 cut(s) 279
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 1 cut(s) 233
Bsp143I GATC 5 cut(s) 23, 35, 246, 303, 344
BspACI CCGC 3 cut(s) 186, 321, 371
BspANI GGCC 1 cut(s) 233
BspDI ATCGAT 1 cut(s) 279
BspLI GGNNCC 3 cut(s) 133, 134, 346
BspPI GGATC 2 cut(s) 339, 352
BspTI CTTAAG 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 2 cut(s) 128, 219
BssMI GATC 5 cut(s) 23, 35, 246, 303, 344
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 3 cut(s) 129, 190, 325
BstAFI CTTAAG 1 cut(s) 94
BstC8I GCNNGC 2 cut(s) 315, 408
BstDEI CTNAG 1 cut(s) 73
BstF5I GGATG 2 cut(s) 124, 420
BstKTI GATC 5 cut(s) 26, 38, 249, 306, 347
BstMBI GATC 5 cut(s) 23, 35, 246, 303, 344
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNI CCWGG 3 cut(s) 129, 190, 325
BstSCI CCNGG 3 cut(s) 127, 188, 323
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 329
BstX2I RGATCY 2 cut(s) 35, 344
BstYI RGATCY 2 cut(s) 35, 344
Bsu15I ATCGAT 1 cut(s) 279
BsuI GTATCC 1 cut(s) 203
BsuRI GGCC 1 cut(s) 233
BsuTUI ATCGAT 1 cut(s) 279
BtsCI GGATG 2 cut(s) 124, 420
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 2 cut(s) 315, 408
CaiI CAGNNNCTG 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 125, 132
ClaI ATCGAT 1 cut(s) 279
Csp6I GTAC 1 cut(s) 89
CviJI RGCY 7 cut(s) 160, 185, 233, 290, 320, 362, 410
CviKI_1 RGCY 7 cut(s) 160, 185, 233, 290, 320, 362, 410
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 1 cut(s) 73
DpnI GATC 5 cut(s) 25, 37, 248, 305, 346
DpnII GATC 5 cut(s) 23, 35, 246, 303, 344
EaeI YGGCCR 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 219
Eco47I GGWCC 2 cut(s) 125, 132
Eco57I CTGAAG 1 cut(s) 102
EcoO109I RGGNCCY 2 cut(s) 125, 132
EcoRII CCWGG 3 cut(s) 127, 188, 323
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaiI YATR 3 cut(s) 15, 17, 149
FalI AAGNNNNNCTT 2 cut(s) 394, 426
FaqI GGGAC 1 cut(s) 145
FbaI TGATCA 1 cut(s) 246
Fnu4HI GCNGC 3 cut(s) 186, 318, 321
FokI GGATG 2 cut(s) 131, 427
Fsp4HI GCNGC 3 cut(s) 186, 318, 321
FspBI CTAG 1 cut(s) 60
GluI GCNGC 3 cut(s) 186, 318, 321
HaeIII GGCC 1 cut(s) 233
HapII CCGG 1 cut(s) 234
HinfI GANTC 6 cut(s) 19, 77, 239, 270, 296, 393
HpaII CCGG 1 cut(s) 234
HphI GGTGA 3 cut(s) 248, 305, 377
Hpy166II GTNNAC 1 cut(s) 368
Hpy188I TCNGA 2 cut(s) 82, 398
Hpy8I GTNNAC 1 cut(s) 368
HpyAV CCTTC 1 cut(s) 432
HpyCH4V TGCA 2 cut(s) 122, 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 1 cut(s) 73
KflI GGGWCCC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 5 cut(s) 23, 35, 246, 303, 344
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 2 cut(s) 18, 109
MaeI CTAG 1 cut(s) 60
MalI GATC 5 cut(s) 25, 37, 248, 305, 346
MboI GATC 5 cut(s) 23, 35, 246, 303, 344
MboII GAAGA 6 cut(s) 113, 265, 368, 371, 374, 402
MflI RGATCY 2 cut(s) 35, 344
MluCI AATT 2 cut(s) 40, 141
MlyI GAGTC 1 cut(s) 28
MnlI CCTC 1 cut(s) 435
MroXI GAANNNNTTC 1 cut(s) 372
MseI TTAA 2 cut(s) 51, 95
MslI CAYNNNNRTG 1 cut(s) 14
MspCI CTTAAG 1 cut(s) 94
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 3 cut(s) 129, 190, 325
MvaI CCWGG 3 cut(s) 129, 190, 325
MwoI GCNNNNNNNGC 1 cut(s) 157
NdeII GATC 5 cut(s) 23, 35, 246, 303, 344
NlaIV GGNNCC 3 cut(s) 133, 134, 346
PdmI GAANNNNTTC 1 cut(s) 372
PfeI GAWTC 5 cut(s) 77, 239, 270, 296, 393
PkrI GCNGC 3 cut(s) 187, 319, 322
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
PpuMI RGGWCCY 2 cut(s) 125, 132
Psp5II RGGWCCY 2 cut(s) 125, 132
Psp6I CCWGG 3 cut(s) 127, 188, 323
PspGI CCWGG 3 cut(s) 127, 188, 323
PspN4I GGNNCC 3 cut(s) 133, 134, 346
PspPI GGNCC 2 cut(s) 125, 132
PspPPI RGGWCCY 2 cut(s) 125, 132
PstNI CAGNNNCTG 1 cut(s) 128
PsuI RGATCY 2 cut(s) 35, 344
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 2 cut(s) 51, 95
SatI GCNGC 3 cut(s) 186, 318, 321
Sau3AI GATC 5 cut(s) 23, 35, 246, 303, 344
Sau96I GGNCC 2 cut(s) 125, 132
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 3 cut(s) 129, 190, 325
SetI ASST 6 cut(s) 130, 194, 207, 329, 412, 446
SfaNI GCATC 2 cut(s) 18, 109
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 2 cut(s) 125, 132
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
Sse9I AATT 2 cut(s) 40, 141
SsiI CCGC 3 cut(s) 186, 321, 371
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 3 cut(s) 127, 188, 323
StyI CCWWGG 1 cut(s) 219
TaqI TCGA 2 cut(s) 22, 279
TasI AATT 2 cut(s) 40, 141
TauI GCSGC 2 cut(s) 188, 323
TfiI GAWTC 5 cut(s) 77, 239, 270, 296, 393
Tru1I TTAA 2 cut(s) 51, 95
Tru9I TTAA 2 cut(s) 51, 95
TscAI CASTG 1 cut(s) 249
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 265, 320
TspRI CASTG 1 cut(s) 249
Vha464I CTTAAG 1 cut(s) 94
VpaK11BI GGWCC 2 cut(s) 125, 132
XapI RAATTY 1 cut(s) 141
XcmI CCANNNNNNNNNTGG 2 cut(s) 226, 355
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.